Wall clock time and date at job start Mon Mar 30 2020 17:22:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47101 * 2 1 4 4 C 1.52999 * 109.47329 * 175.67214 * 3 2 1 5 5 C 1.53001 * 109.47545 * 185.69229 * 4 3 2 6 6 N 1.46896 * 109.47420 * 295.67605 * 3 2 1 7 7 C 1.46902 * 111.00315 * 99.90524 * 6 3 2 8 8 H 1.09000 * 109.40986 * 323.43896 * 7 6 3 9 9 C 1.52959 * 109.35515 * 83.25981 * 7 6 3 10 10 C 1.53222 * 109.40407 * 183.67098 * 9 7 6 11 11 C 1.51270 * 108.53658 * 305.37082 * 10 9 7 12 12 C 1.37880 * 120.84977 * 231.32781 * 11 10 9 13 13 N 1.31518 * 119.99898 * 0.02562 * 12 11 10 14 14 Si 1.86795 * 120.00108 * 180.02562 * 12 11 10 15 15 H 1.48502 * 109.47510 * 89.99759 * 14 12 11 16 16 H 1.48502 * 109.47270 * 209.99999 * 14 12 11 17 17 H 1.48507 * 109.47007 * 329.99942 * 14 12 11 18 18 C 1.51259 * 118.29987 * 51.35091 * 11 10 9 19 19 C 1.52959 * 109.41479 * 203.57888 * 7 6 3 20 20 H 1.09006 * 109.47258 * 66.12848 * 1 2 3 21 21 H 1.09003 * 109.47063 * 186.12609 * 1 2 3 22 22 H 1.08998 * 109.47642 * 306.12622 * 1 2 3 23 23 H 1.08999 * 109.47364 * 239.99811 * 2 1 3 24 24 H 1.09004 * 109.47071 * 119.99497 * 2 1 3 25 25 H 1.08999 * 109.47338 * 55.67547 * 3 2 1 26 26 H 1.08993 * 109.47453 * 305.69807 * 4 3 2 27 27 H 1.09005 * 109.46741 * 65.69442 * 4 3 2 28 28 H 1.09006 * 109.46812 * 64.75035 * 5 4 3 29 29 H 1.09000 * 109.47633 * 184.75390 * 5 4 3 30 30 H 1.09000 * 109.47096 * 304.75872 * 5 4 3 31 31 H 1.00905 * 110.99757 * 335.95169 * 6 3 2 32 32 H 1.09002 * 109.48141 * 63.68613 * 9 7 6 33 33 H 1.09002 * 109.48027 * 303.65145 * 9 7 6 34 34 H 1.09008 * 109.62785 * 185.65925 * 10 9 7 35 35 H 1.08998 * 109.62856 * 65.08675 * 10 9 7 36 36 H 0.96996 * 119.99417 * 180.02562 * 13 12 11 37 37 H 1.09007 * 109.62912 * 68.36544 * 18 11 10 38 38 H 1.09000 * 109.63055 * 188.93818 * 18 11 10 39 39 H 1.08996 * 109.48137 * 56.38843 * 19 7 6 40 40 H 1.09002 * 109.47995 * 296.34840 * 19 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5661 1.4439 0.1089 5 6 4.0659 2.8829 0.2517 6 7 1.6374 2.1042 -1.2482 7 6 0.4515 2.9456 -1.0393 8 1 -0.2158 2.4606 -0.3268 9 6 0.8849 4.3043 -0.4865 10 6 -0.3564 5.1494 -0.1820 11 6 -1.2040 5.2269 -1.4326 12 6 -1.6388 6.4421 -1.9178 13 7 -1.3170 7.5532 -1.2921 14 14 -2.6850 6.5102 -3.4638 15 1 -4.1207 6.4248 -3.0942 16 1 -2.4325 7.7883 -4.1765 17 1 -2.3335 5.3714 -4.3499 18 6 -1.5627 3.9372 -2.1368 19 6 -0.2777 3.1360 -2.3704 20 1 -0.3634 0.4159 -0.9398 21 1 -0.3633 -1.0218 0.1097 22 1 -0.3634 0.6058 0.8300 23 1 1.8933 -0.5138 -0.8899 24 1 1.8933 -0.5138 0.8901 25 1 1.6147 1.9782 0.8487 26 1 3.8686 0.8658 0.9819 27 1 3.9947 0.9978 -0.7886 28 1 3.7056 3.3010 1.1917 29 1 5.1559 2.8914 0.2444 30 1 3.6923 3.4815 -0.5791 31 1 1.4771 1.4285 -1.9802 32 1 1.5018 4.8171 -1.2245 33 1 1.4586 4.1581 0.4287 34 1 -0.0521 6.1526 0.1167 35 1 -0.9289 4.6835 0.6200 36 1 -1.6232 8.4080 -1.6333 37 1 -2.2469 3.3590 -1.5158 38 1 -2.0334 4.1614 -3.0940 39 1 -0.5279 2.1618 -2.7904 40 1 0.3668 3.6763 -3.0638 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001257287036.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:22:44 Heat of formation + Delta-G solvation = -37.580665 kcal Electronic energy + Delta-G solvation = -16696.051829 eV Core-core repulsion = 14315.997575 eV Total energy + Delta-G solvation = -2380.054254 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -38.45092 -35.80071 -32.59108 -31.88246 -30.41149 -29.49923 -27.01887 -25.08248 -21.81716 -21.79788 -21.34244 -19.93817 -19.03074 -16.04095 -15.59222 -14.88707 -14.40947 -14.11594 -13.79374 -13.29359 -13.08406 -12.74757 -12.53720 -12.31915 -12.09230 -11.84686 -11.58193 -11.37515 -11.02958 -10.85381 -10.70755 -10.66253 -10.46031 -10.35195 -10.23091 -10.11836 -9.78212 -9.36580 -8.81047 -8.54633 -8.40244 -7.75518 -6.03762 -3.93891 3.29997 3.38291 3.38779 4.42650 4.64106 4.88385 5.17390 5.21980 5.28508 5.50850 5.64364 5.67988 5.82757 5.84684 5.93124 6.01705 6.06833 6.16324 6.20444 6.27582 6.35627 6.37597 6.47366 6.63547 6.73998 6.80835 6.91243 6.98492 7.06931 7.12975 7.21865 7.48296 7.70302 7.79079 7.84102 7.92970 8.03098 8.47311 9.04332 9.60781 11.05945 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.035859 B = 0.007746 C = 0.006947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.646639 B = 3613.780008 C = 4029.488651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.146 4.146 3 C 0.084 3.916 4 C -0.106 4.106 5 C -0.145 4.145 6 N -0.682 5.682 7 C 0.099 3.901 8 H 0.035 0.965 9 C -0.091 4.091 10 C 0.008 3.992 11 C -0.482 4.482 12 C 0.074 3.926 13 N -0.892 5.892 14 Si 0.886 3.114 15 H -0.280 1.280 16 H -0.290 1.290 17 H -0.265 1.265 18 C -0.019 4.019 19 C -0.106 4.106 20 H 0.057 0.943 21 H 0.049 0.951 22 H 0.055 0.945 23 H 0.060 0.940 24 H 0.060 0.940 25 H 0.072 0.928 26 H 0.051 0.949 27 H 0.057 0.943 28 H 0.045 0.955 29 H 0.040 0.960 30 H 0.073 0.927 31 H 0.330 0.670 32 H 0.052 0.948 33 H 0.027 0.973 34 H 0.056 0.944 35 H -0.002 1.002 36 H 0.263 0.737 37 H 0.013 0.987 38 H 0.033 0.967 39 H 0.026 0.974 40 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.717 -12.054 1.366 13.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.185 4.185 3 C -0.026 4.026 4 C -0.144 4.144 5 C -0.203 4.203 6 N -0.312 5.312 7 C -0.010 4.010 8 H 0.053 0.947 9 C -0.130 4.130 10 C -0.030 4.030 11 C -0.501 4.501 12 C -0.128 4.128 13 N -0.530 5.530 14 Si 0.714 3.286 15 H -0.206 1.206 16 H -0.217 1.217 17 H -0.190 1.190 18 C -0.057 4.057 19 C -0.144 4.144 20 H 0.077 0.923 21 H 0.068 0.932 22 H 0.074 0.926 23 H 0.079 0.921 24 H 0.079 0.921 25 H 0.090 0.910 26 H 0.069 0.931 27 H 0.076 0.924 28 H 0.064 0.936 29 H 0.059 0.941 30 H 0.092 0.908 31 H 0.148 0.852 32 H 0.071 0.929 33 H 0.045 0.955 34 H 0.074 0.926 35 H 0.017 0.983 36 H 0.073 0.927 37 H 0.032 0.968 38 H 0.052 0.948 39 H 0.045 0.955 40 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 6.144 -11.319 1.438 12.959 hybrid contribution -1.262 -0.590 -0.743 1.579 sum 4.882 -11.909 0.695 12.889 Atomic orbital electron populations 1.21860 0.95816 1.01102 1.02491 1.22197 0.96205 0.98332 1.01806 1.21673 0.95151 0.92017 0.93772 1.21473 0.95137 0.97407 1.00411 1.21695 0.99092 0.96989 1.02504 1.60708 1.38448 1.25324 1.06726 1.21539 0.88440 0.93974 0.96999 0.94693 1.21616 0.99128 0.94393 0.97818 1.19406 0.91930 0.96737 0.94941 1.20046 1.30988 0.89604 1.09493 1.24852 0.95787 0.95271 0.96924 1.69845 1.45380 0.97734 1.40027 0.86702 0.80787 0.77018 0.84071 1.20565 1.21691 1.19014 1.19799 0.93027 0.96031 0.96864 1.21711 0.99144 0.97612 0.95946 0.92349 0.93212 0.92555 0.92081 0.92082 0.90994 0.93058 0.92418 0.93592 0.94122 0.90782 0.85228 0.92917 0.95476 0.92588 0.98331 0.92719 0.96848 0.94825 0.95545 0.92395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.96 8.56 37.16 0.32 -1.64 16 2 C -0.15 -1.75 5.26 -26.73 -0.14 -1.89 16 3 C 0.08 1.18 1.95 -67.72 -0.13 1.04 16 4 C -0.11 -1.35 5.61 -26.73 -0.15 -1.50 16 5 C -0.15 -2.01 9.86 37.16 0.37 -1.64 16 6 N -0.68 -10.85 5.29 -99.79 -0.53 -11.37 16 7 C 0.10 1.89 1.46 -67.75 -0.10 1.79 16 8 H 0.04 0.69 5.98 -51.93 -0.31 0.38 16 9 C -0.09 -1.99 5.41 -26.64 -0.14 -2.13 16 10 C 0.01 0.20 5.97 -27.49 -0.16 0.03 16 11 C -0.48 -12.88 5.51 -98.93 -0.55 -13.43 16 12 C 0.07 2.05 5.46 -17.82 -0.10 1.95 16 13 N -0.89 -26.12 12.73 55.43 0.71 -25.42 16 14 Si 0.89 21.36 27.53 -169.99 -4.68 16.68 16 15 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 16 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 17 H -0.26 -6.16 6.10 56.52 0.35 -5.82 16 18 C -0.02 -0.45 5.59 -27.49 -0.15 -0.60 16 19 C -0.11 -2.16 5.25 -26.63 -0.14 -2.30 16 20 H 0.06 0.80 6.91 -51.93 -0.36 0.45 16 21 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 22 H 0.06 0.76 7.81 -51.93 -0.41 0.36 16 23 H 0.06 0.69 8.05 -51.93 -0.42 0.27 16 24 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 25 H 0.07 1.13 7.04 -51.93 -0.37 0.77 16 26 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 28 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.07 1.18 7.65 -51.93 -0.40 0.79 16 31 H 0.33 4.91 7.61 -39.29 -0.30 4.61 16 32 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 33 H 0.03 0.55 7.51 -51.93 -0.39 0.16 16 34 H 0.06 1.57 7.07 -51.92 -0.37 1.20 16 35 H 0.00 -0.04 8.14 -51.93 -0.42 -0.47 16 36 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 37 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 38 H 0.03 0.79 4.60 -51.93 -0.24 0.55 16 39 H 0.03 0.47 8.05 -51.93 -0.42 0.05 16 40 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 LS Contribution 299.78 15.07 4.52 4.52 Total: -1.00 -27.48 299.78 -8.45 -35.94 By element: Atomic # 1 Polarization: 7.36 SS G_CDS: -7.39 Total: -0.03 kcal Atomic # 6 Polarization: -19.23 SS G_CDS: -1.08 Total: -20.31 kcal Atomic # 7 Polarization: -36.97 SS G_CDS: 0.18 Total: -36.79 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -4.68 Total: 16.68 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -27.48 -8.45 -35.94 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001257287036.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.642 kcal (2) G-P(sol) polarization free energy of solvation -27.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds