Wall clock time and date at job start Mon Mar 30 2020 17:22:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47101 * 2 1 4 4 C 1.52999 * 109.47329 * 175.67214 * 3 2 1 5 5 C 1.53001 * 109.47545 * 185.69229 * 4 3 2 6 6 N 1.46896 * 109.47420 * 295.67605 * 3 2 1 7 7 C 1.46902 * 111.00315 * 99.90524 * 6 3 2 8 8 H 1.09000 * 109.40986 * 323.43896 * 7 6 3 9 9 C 1.52959 * 109.35515 * 83.25981 * 7 6 3 10 10 C 1.53222 * 109.40407 * 183.67098 * 9 7 6 11 11 C 1.51270 * 108.53658 * 305.37082 * 10 9 7 12 12 C 1.37880 * 120.84977 * 231.32781 * 11 10 9 13 13 N 1.31518 * 119.99898 * 0.02562 * 12 11 10 14 14 Si 1.86795 * 120.00108 * 180.02562 * 12 11 10 15 15 H 1.48502 * 109.47510 * 89.99759 * 14 12 11 16 16 H 1.48502 * 109.47270 * 209.99999 * 14 12 11 17 17 H 1.48507 * 109.47007 * 329.99942 * 14 12 11 18 18 C 1.51259 * 118.29987 * 51.35091 * 11 10 9 19 19 C 1.52959 * 109.41479 * 203.57888 * 7 6 3 20 20 H 1.09006 * 109.47258 * 66.12848 * 1 2 3 21 21 H 1.09003 * 109.47063 * 186.12609 * 1 2 3 22 22 H 1.08998 * 109.47642 * 306.12622 * 1 2 3 23 23 H 1.08999 * 109.47364 * 239.99811 * 2 1 3 24 24 H 1.09004 * 109.47071 * 119.99497 * 2 1 3 25 25 H 1.08999 * 109.47338 * 55.67547 * 3 2 1 26 26 H 1.08993 * 109.47453 * 305.69807 * 4 3 2 27 27 H 1.09005 * 109.46741 * 65.69442 * 4 3 2 28 28 H 1.09006 * 109.46812 * 64.75035 * 5 4 3 29 29 H 1.09000 * 109.47633 * 184.75390 * 5 4 3 30 30 H 1.09000 * 109.47096 * 304.75872 * 5 4 3 31 31 H 1.00905 * 110.99757 * 335.95169 * 6 3 2 32 32 H 1.09002 * 109.48141 * 63.68613 * 9 7 6 33 33 H 1.09002 * 109.48027 * 303.65145 * 9 7 6 34 34 H 1.09008 * 109.62785 * 185.65925 * 10 9 7 35 35 H 1.08998 * 109.62856 * 65.08675 * 10 9 7 36 36 H 0.96996 * 119.99417 * 180.02562 * 13 12 11 37 37 H 1.09007 * 109.62912 * 68.36544 * 18 11 10 38 38 H 1.09000 * 109.63055 * 188.93818 * 18 11 10 39 39 H 1.08996 * 109.48137 * 56.38843 * 19 7 6 40 40 H 1.09002 * 109.47995 * 296.34840 * 19 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5661 1.4439 0.1089 5 6 4.0659 2.8829 0.2517 6 7 1.6374 2.1042 -1.2482 7 6 0.4515 2.9456 -1.0393 8 1 -0.2158 2.4606 -0.3268 9 6 0.8849 4.3043 -0.4865 10 6 -0.3564 5.1494 -0.1820 11 6 -1.2040 5.2269 -1.4326 12 6 -1.6388 6.4421 -1.9178 13 7 -1.3170 7.5532 -1.2921 14 14 -2.6850 6.5102 -3.4638 15 1 -4.1207 6.4248 -3.0942 16 1 -2.4325 7.7883 -4.1765 17 1 -2.3335 5.3714 -4.3499 18 6 -1.5627 3.9372 -2.1368 19 6 -0.2777 3.1360 -2.3704 20 1 -0.3634 0.4159 -0.9398 21 1 -0.3633 -1.0218 0.1097 22 1 -0.3634 0.6058 0.8300 23 1 1.8933 -0.5138 -0.8899 24 1 1.8933 -0.5138 0.8901 25 1 1.6147 1.9782 0.8487 26 1 3.8686 0.8658 0.9819 27 1 3.9947 0.9978 -0.7886 28 1 3.7056 3.3010 1.1917 29 1 5.1559 2.8914 0.2444 30 1 3.6923 3.4815 -0.5791 31 1 1.4771 1.4285 -1.9802 32 1 1.5018 4.8171 -1.2245 33 1 1.4586 4.1581 0.4287 34 1 -0.0521 6.1526 0.1167 35 1 -0.9289 4.6835 0.6200 36 1 -1.6232 8.4080 -1.6333 37 1 -2.2469 3.3590 -1.5158 38 1 -2.0334 4.1614 -3.0940 39 1 -0.5279 2.1618 -2.7904 40 1 0.3668 3.6763 -3.0638 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001257287036.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:22:44 Heat of formation + Delta-G solvation = -53.183344 kcal Electronic energy + Delta-G solvation = -16696.728412 eV Core-core repulsion = 14315.997575 eV Total energy + Delta-G solvation = -2380.730837 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.85264 -37.37275 -34.40208 -32.94439 -32.00332 -31.36104 -28.58842 -26.41547 -23.65835 -23.14542 -22.79009 -21.20161 -20.73412 -18.00100 -16.85682 -16.40099 -16.08353 -15.45316 -14.99669 -14.76981 -14.64493 -14.38771 -14.08071 -13.85712 -13.63111 -13.17667 -13.14804 -12.73919 -12.61776 -12.37558 -12.32395 -11.98144 -11.82494 -11.77380 -11.63911 -11.48499 -11.44521 -11.19657 -10.72131 -10.54574 -10.40069 -9.07165 -8.14729 -6.08847 1.38803 1.40710 1.49518 2.41736 3.08863 3.41740 3.86097 4.12139 4.23651 4.26381 4.32563 4.47058 4.61447 4.65827 4.67713 4.77741 4.81284 4.97992 5.01663 5.07797 5.10930 5.12771 5.16645 5.21477 5.27128 5.28650 5.29484 5.30661 5.43003 5.51196 5.62971 5.64360 5.66186 5.80619 5.93759 6.38300 6.40176 6.75780 6.98063 7.48531 8.96572 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.035859 B = 0.007746 C = 0.006947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.646639 B = 3613.780008 C = 4029.488651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.138 4.138 3 C 0.083 3.917 4 C -0.101 4.101 5 C -0.145 4.145 6 N -0.680 5.680 7 C 0.113 3.887 8 H 0.033 0.967 9 C -0.077 4.077 10 C 0.005 3.995 11 C -0.494 4.494 12 C 0.015 3.985 13 N -0.936 5.936 14 Si 0.943 3.057 15 H -0.275 1.275 16 H -0.294 1.294 17 H -0.247 1.247 18 C -0.022 4.022 19 C -0.101 4.101 20 H 0.046 0.954 21 H 0.067 0.933 22 H 0.040 0.960 23 H 0.075 0.925 24 H 0.077 0.923 25 H 0.051 0.949 26 H 0.072 0.928 27 H 0.066 0.934 28 H 0.037 0.963 29 H 0.056 0.944 30 H 0.047 0.953 31 H 0.341 0.659 32 H 0.032 0.968 33 H 0.035 0.965 34 H 0.019 0.981 35 H -0.007 1.007 36 H 0.261 0.739 37 H 0.019 0.981 38 H 0.036 0.964 39 H 0.060 0.940 40 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.131 -14.886 0.489 16.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.177 4.177 3 C -0.027 4.027 4 C -0.139 4.139 5 C -0.202 4.202 6 N -0.312 5.312 7 C 0.004 3.996 8 H 0.051 0.949 9 C -0.116 4.116 10 C -0.033 4.033 11 C -0.514 4.514 12 C -0.183 4.183 13 N -0.577 5.577 14 Si 0.769 3.231 15 H -0.200 1.200 16 H -0.220 1.220 17 H -0.171 1.171 18 C -0.060 4.060 19 C -0.139 4.139 20 H 0.065 0.935 21 H 0.086 0.914 22 H 0.059 0.941 23 H 0.094 0.906 24 H 0.095 0.905 25 H 0.069 0.931 26 H 0.090 0.910 27 H 0.085 0.915 28 H 0.056 0.944 29 H 0.075 0.925 30 H 0.066 0.934 31 H 0.161 0.839 32 H 0.050 0.950 33 H 0.054 0.946 34 H 0.038 0.962 35 H 0.011 0.989 36 H 0.070 0.930 37 H 0.037 0.963 38 H 0.054 0.946 39 H 0.078 0.922 40 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 6.563 -14.186 0.557 15.640 hybrid contribution -1.349 0.280 -0.370 1.427 sum 5.214 -13.906 0.187 14.853 Atomic orbital electron populations 1.21849 0.96406 1.01820 1.01168 1.22120 0.95543 0.96751 1.03302 1.21728 0.96059 0.93081 0.91868 1.21450 0.93917 0.96734 1.01778 1.21670 1.00148 0.97520 1.00890 1.60559 1.36495 1.25965 1.08179 1.21202 0.89394 0.92821 0.96160 0.94859 1.21389 0.96940 0.95451 0.97813 1.19369 0.93599 0.95494 0.94847 1.20682 1.29996 0.91093 1.09589 1.25693 0.97348 0.95119 1.00090 1.70000 1.47424 0.98281 1.41961 0.85777 0.79239 0.77300 0.80800 1.20037 1.22048 1.17104 1.19823 0.94734 0.94870 0.96553 1.21603 0.97346 0.98595 0.96342 0.93520 0.91431 0.94075 0.90647 0.90452 0.93052 0.90980 0.91530 0.94423 0.92510 0.93396 0.83950 0.94954 0.94598 0.96185 0.98879 0.92977 0.96285 0.94586 0.92181 0.93598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.48 8.56 71.98 0.62 -2.86 16 2 C -0.14 -2.81 5.26 30.59 0.16 -2.65 16 3 C 0.08 2.11 1.95 44.91 0.09 2.20 16 4 C -0.10 -2.27 5.61 30.59 0.17 -2.10 16 5 C -0.14 -3.80 9.86 71.98 0.71 -3.09 16 6 N -0.68 -20.21 5.29 -469.62 -2.48 -22.69 16 7 C 0.11 4.19 1.46 44.89 0.07 4.26 16 8 H 0.03 1.26 5.98 -2.39 -0.01 1.25 16 9 C -0.08 -3.42 5.41 30.65 0.17 -3.26 16 10 C 0.00 0.26 5.97 30.10 0.18 0.44 16 11 C -0.49 -26.70 5.51 -16.17 -0.09 -26.79 16 12 C 0.01 0.84 5.46 84.65 0.46 1.30 16 13 N -0.94 -56.86 12.73 21.45 0.27 -56.58 16 14 Si 0.94 43.95 27.53 68.60 1.89 45.84 16 15 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 16 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 17 H -0.25 -10.68 6.10 99.48 0.61 -10.07 16 18 C -0.02 -0.99 5.59 30.10 0.17 -0.82 16 19 C -0.10 -3.89 5.25 30.66 0.16 -3.73 16 20 H 0.05 1.14 6.91 -2.38 -0.02 1.13 16 21 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 22 H 0.04 1.03 7.81 -2.39 -0.02 1.01 16 23 H 0.07 1.36 8.05 -2.39 -0.02 1.34 16 24 H 0.08 1.36 8.14 -2.38 -0.02 1.34 16 25 H 0.05 1.54 7.04 -2.39 -0.02 1.52 16 26 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 27 H 0.07 1.41 8.14 -2.38 -0.02 1.39 16 28 H 0.04 1.02 8.14 -2.38 -0.02 1.00 16 29 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 30 H 0.05 1.50 7.65 -2.39 -0.02 1.48 16 31 H 0.34 9.03 7.61 -89.69 -0.68 8.35 16 32 H 0.03 1.54 8.14 -2.39 -0.02 1.52 16 33 H 0.04 1.49 7.51 -2.39 -0.02 1.47 16 34 H 0.02 1.16 7.07 -2.38 -0.02 1.14 16 35 H -0.01 -0.38 8.14 -2.39 -0.02 -0.40 16 36 H 0.26 15.08 8.31 -92.71 -0.77 14.31 16 37 H 0.02 0.84 8.14 -2.38 -0.02 0.82 16 38 H 0.04 1.61 4.60 -2.39 -0.01 1.59 16 39 H 0.06 1.94 8.05 -2.39 -0.02 1.92 16 40 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 Total: -1.00 -60.28 299.78 2.74 -57.53 By element: Atomic # 1 Polarization: 12.81 SS G_CDS: 0.21 Total: 13.01 kcal Atomic # 6 Polarization: -39.97 SS G_CDS: 2.86 Total: -37.11 kcal Atomic # 7 Polarization: -77.07 SS G_CDS: -2.21 Total: -79.28 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 1.89 Total: 45.84 kcal Total: -60.28 2.74 -57.53 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001257287036.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.352 kcal (2) G-P(sol) polarization free energy of solvation -60.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds