Wall clock time and date at job start Mon Mar 30 2020 17:25:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53001 * 109.47403 * 2 1 4 4 H 1.08998 * 109.46826 * 179.81441 * 3 2 1 5 5 C 1.50698 * 109.46887 * 299.81631 * 3 2 1 6 6 H 1.07999 * 119.99813 * 120.00188 * 5 3 2 7 7 C 1.37873 * 119.99944 * 299.99624 * 5 3 2 8 8 N 1.31512 * 120.00414 * 0.02562 * 7 5 3 9 9 Si 1.86804 * 120.00016 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.46861 * 359.97438 * 9 7 5 11 11 H 1.48494 * 109.47612 * 120.00007 * 9 7 5 12 12 H 1.48506 * 109.46950 * 240.00113 * 9 7 5 13 13 N 1.46903 * 109.46891 * 59.81558 * 3 2 1 14 14 C 1.46903 * 110.99641 * 85.80934 * 13 3 2 15 15 C 1.53007 * 109.46578 * 175.93484 * 14 13 3 16 16 H 1.09004 * 110.21658 * 63.06960 * 15 14 13 17 17 C 1.54480 * 110.24209 * 184.99654 * 15 14 13 18 18 C 1.54629 * 101.76310 * 93.58349 * 17 15 14 19 19 C 1.51288 * 104.19611 * 24.79737 * 18 17 15 20 20 O 1.21280 * 124.94121 * 163.78017 * 19 18 17 21 21 N 1.34415 * 110.11145 * 343.74486 * 19 18 17 22 22 H 1.09005 * 109.46851 * 55.60745 * 1 2 3 23 23 H 1.08998 * 109.47617 * 295.60894 * 1 2 3 24 24 H 1.08999 * 109.47352 * 175.60372 * 1 2 3 25 25 H 1.09005 * 109.46855 * 120.00299 * 2 1 3 26 26 H 1.09000 * 109.47095 * 239.99848 * 2 1 3 27 27 H 0.97001 * 120.00394 * 180.02562 * 8 7 5 28 28 H 1.00905 * 110.99681 * 209.75712 * 13 3 2 29 29 H 1.08994 * 109.46864 * 295.92814 * 14 13 3 30 30 H 1.08994 * 109.47486 * 55.93501 * 14 13 3 31 31 H 1.08996 * 110.96618 * 211.69797 * 17 15 14 32 32 H 1.08994 * 110.97242 * 335.43028 * 17 15 14 33 33 H 1.09005 * 110.48602 * 143.47249 * 18 17 15 34 34 H 1.08996 * 110.48892 * 265.98697 * 18 17 15 35 35 H 0.96998 * 124.34356 * 179.58880 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1300 1.4424 0.0033 5 6 1.5414 2.1515 -1.2327 6 1 0.9203 3.0298 -1.1364 7 6 1.8783 1.6791 -2.4834 8 7 2.6344 0.6095 -2.6007 9 14 1.2608 2.5585 -4.0115 10 1 0.4345 3.7255 -3.6111 11 1 2.4185 3.0240 -4.8167 12 1 0.4380 1.6246 -4.8216 13 7 1.5467 2.1362 1.1972 14 6 2.4373 1.9072 2.3428 15 6 1.9483 2.7245 3.5403 16 1 0.9567 2.3898 3.8451 17 6 2.9412 2.5955 4.7167 18 6 3.8494 3.8279 4.4993 19 6 2.9821 4.7960 3.7251 20 8 3.2097 5.9799 3.5933 21 7 1.9231 4.1528 3.2040 22 1 -0.3633 0.5805 -0.8481 23 1 -0.3634 0.4442 0.9267 24 1 -0.3634 -1.0246 -0.0788 25 1 1.8932 -0.5139 0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 2.8717 0.2773 -3.4806 28 1 1.4305 3.1230 1.0212 29 1 2.4334 0.8480 2.5999 30 1 3.4503 2.2142 2.0827 31 1 2.4225 2.6572 5.6734 32 1 3.5136 1.6708 4.6445 33 1 4.1423 4.2595 5.4564 34 1 4.7309 3.5546 3.9194 35 1 1.2311 4.5781 2.6738 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070628362.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:25:34 Heat of formation + Delta-G solvation = -48.564184 kcal Electronic energy + Delta-G solvation = -16052.117411 eV Core-core repulsion = 13470.327871 eV Total energy + Delta-G solvation = -2581.789540 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.24763 -37.02200 -35.67183 -32.52159 -31.25583 -30.74745 -28.25453 -26.01316 -23.65101 -23.03859 -21.00069 -20.27574 -19.02108 -17.30267 -16.65955 -15.68716 -15.21066 -14.88338 -14.18785 -13.90816 -13.54108 -13.37747 -13.10159 -12.62788 -12.58346 -12.14321 -11.87402 -11.45632 -11.29561 -10.98483 -10.96248 -10.66448 -10.43979 -10.07209 -9.79798 -9.74832 -9.43709 -8.95106 -8.79021 -8.50526 -7.34396 -6.06022 -4.11727 2.72896 3.26339 3.34785 3.38494 3.52892 4.33539 4.41890 4.49668 4.80907 4.99586 5.25578 5.43814 5.46374 5.61299 5.64031 5.77833 5.91732 6.14416 6.27087 6.49865 6.62706 6.80493 6.96179 7.17156 7.17540 7.26091 7.43574 7.68901 7.74683 7.79377 8.19884 8.30987 8.39013 8.59004 8.96624 9.53526 10.99848 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.031364 B = 0.007079 C = 0.006263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.523732 B = 3954.335212 C = 4469.380257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.103 4.103 3 C 0.216 3.784 4 H 0.000 1.000 5 C -0.514 4.514 6 H 0.059 0.941 7 C 0.064 3.936 8 N -0.888 5.888 9 Si 0.893 3.107 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.283 1.283 13 N -0.684 5.684 14 C 0.048 3.952 15 C 0.131 3.869 16 H 0.094 0.906 17 C -0.128 4.128 18 C -0.157 4.157 19 C 0.518 3.482 20 O -0.546 6.546 21 N -0.720 5.720 22 H 0.056 0.944 23 H 0.041 0.959 24 H 0.013 0.987 25 H 0.009 0.991 26 H 0.087 0.913 27 H 0.260 0.740 28 H 0.328 0.672 29 H 0.076 0.924 30 H 0.024 0.976 31 H 0.081 0.919 32 H 0.091 0.909 33 H 0.097 0.903 34 H 0.103 0.897 35 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.294 0.434 12.402 12.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.141 4.141 3 C 0.109 3.891 4 H 0.018 0.982 5 C -0.552 4.552 6 H 0.077 0.923 7 C -0.138 4.138 8 N -0.527 5.527 9 Si 0.721 3.279 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.209 1.209 13 N -0.315 5.315 14 C -0.083 4.083 15 C 0.025 3.975 16 H 0.112 0.888 17 C -0.166 4.166 18 C -0.197 4.197 19 C 0.304 3.696 20 O -0.424 6.424 21 N -0.375 5.375 22 H 0.075 0.925 23 H 0.060 0.940 24 H 0.032 0.968 25 H 0.028 0.972 26 H 0.105 0.895 27 H 0.070 0.930 28 H 0.145 0.855 29 H 0.094 0.906 30 H 0.042 0.958 31 H 0.099 0.901 32 H 0.110 0.890 33 H 0.116 0.884 34 H 0.121 0.879 35 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -0.437 0.364 12.424 12.437 hybrid contribution 0.185 0.977 -1.473 1.777 sum -0.252 1.340 10.952 11.036 Atomic orbital electron populations 1.21445 0.97487 0.97448 1.01290 1.21432 0.95036 0.98172 0.99468 1.19143 0.92926 0.91483 0.85594 0.98245 1.21211 1.31675 1.11957 0.90375 0.92329 1.24880 0.94998 0.94986 0.98963 1.69885 1.36642 1.22716 1.23461 0.86526 0.78613 0.79712 0.83090 1.19770 1.21112 1.20944 1.60772 1.48689 1.15679 1.06367 1.22366 0.94841 0.99289 0.91788 1.21839 1.00557 0.80410 0.94697 0.88797 1.22625 0.97151 0.98657 0.98161 1.22326 0.99360 0.96005 1.01998 1.20903 0.81863 0.87724 0.79100 1.90732 1.73910 1.15677 1.62071 1.46323 1.26569 1.10123 1.54490 0.92521 0.94008 0.96756 0.97182 0.89516 0.92970 0.85464 0.90580 0.95827 0.90050 0.89019 0.88422 0.87895 0.74924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.57 9.52 37.15 0.35 -2.22 16 2 C -0.10 -2.39 5.59 -26.73 -0.15 -2.54 16 3 C 0.22 5.18 2.30 -68.86 -0.16 5.02 16 4 H 0.00 0.00 7.72 -51.93 -0.40 -0.40 16 5 C -0.51 -13.55 7.26 -34.44 -0.25 -13.80 16 6 H 0.06 1.55 7.61 -52.49 -0.40 1.15 16 7 C 0.06 1.72 5.30 -17.82 -0.09 1.62 16 8 N -0.89 -24.83 11.32 55.43 0.63 -24.20 16 9 Si 0.89 21.08 29.54 -169.99 -5.02 16.06 16 10 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 11 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 12 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 13 N -0.68 -13.26 5.64 -107.95 -0.61 -13.87 16 14 C 0.05 0.76 5.18 -3.82 -0.02 0.74 16 15 C 0.13 1.57 3.80 -67.01 -0.25 1.31 16 16 H 0.09 1.06 8.14 -51.93 -0.42 0.63 16 17 C -0.13 -1.17 6.70 -25.10 -0.17 -1.34 16 18 C -0.16 -1.69 6.86 -26.74 -0.18 -1.88 16 19 C 0.52 7.71 8.43 -10.86 -0.09 7.62 16 20 O -0.55 -10.39 18.03 5.56 0.10 -10.29 16 21 N -0.72 -9.69 5.24 -52.76 -0.28 -9.96 16 22 H 0.06 1.33 7.07 -51.93 -0.37 0.96 16 23 H 0.04 0.84 7.74 -51.93 -0.40 0.44 16 24 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 25 H 0.01 0.21 7.59 -51.93 -0.39 -0.19 16 26 H 0.09 2.28 6.06 -51.93 -0.31 1.96 16 27 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 28 H 0.33 6.40 7.14 -39.29 -0.28 6.12 16 29 H 0.08 1.17 7.59 -51.93 -0.39 0.77 16 30 H 0.02 0.40 7.95 -51.93 -0.41 -0.01 16 31 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.09 0.74 7.89 -51.93 -0.41 0.33 16 33 H 0.10 0.90 8.14 -51.93 -0.42 0.47 16 34 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 35 H 0.41 5.49 8.56 -40.82 -0.35 5.14 16 LS Contribution 283.98 15.07 4.28 4.28 Total: -1.00 -30.06 283.98 -7.29 -37.35 By element: Atomic # 1 Polarization: 11.49 SS G_CDS: -5.37 Total: 6.12 kcal Atomic # 6 Polarization: -4.46 SS G_CDS: -1.02 Total: -5.47 kcal Atomic # 7 Polarization: -47.78 SS G_CDS: -0.26 Total: -48.03 kcal Atomic # 8 Polarization: -10.39 SS G_CDS: 0.10 Total: -10.29 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -30.06 -7.29 -37.35 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070628362.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.218 kcal (2) G-P(sol) polarization free energy of solvation -30.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds