Wall clock time and date at job start Mon Mar 30 2020 17:24:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53003 * 109.47208 * 2 1 4 4 H 1.08994 * 109.51233 * 305.00474 * 3 2 1 5 5 C 1.53297 * 109.51390 * 184.89718 * 3 2 1 6 6 N 1.47156 * 108.38408 * 187.72132 * 5 3 2 7 7 C 1.34771 * 120.98185 * 230.51193 * 6 5 3 8 8 O 1.21684 * 119.99897 * 174.76787 * 7 6 5 9 9 C 1.46380 * 120.00213 * 354.77523 * 7 6 5 10 10 H 1.07994 * 119.99745 * 4.99780 * 9 7 6 11 11 C 1.40046 * 120.00063 * 184.99800 * 9 7 6 12 12 N 1.30680 * 120.00044 * 359.97438 * 11 9 7 13 13 Si 1.86795 * 120.00033 * 180.02562 * 11 9 7 14 14 H 1.48506 * 109.47326 * 90.00118 * 13 11 9 15 15 H 1.48506 * 109.47104 * 210.00008 * 13 11 9 16 16 H 1.48497 * 109.47059 * 330.00201 * 13 11 9 17 17 C 1.47151 * 118.03517 * 50.53952 * 6 5 3 18 18 H 1.08999 * 109.68390 * 189.74145 * 17 6 5 19 19 C 1.53001 * 109.68225 * 69.22013 * 17 6 5 20 20 C 1.53299 * 108.38285 * 309.46663 * 17 6 5 21 21 O 1.42954 * 109.22524 * 52.30049 * 20 17 6 22 22 H 1.08997 * 109.47111 * 59.99710 * 1 2 3 23 23 H 1.09001 * 109.46982 * 180.02562 * 1 2 3 24 24 H 1.09008 * 109.47328 * 299.99844 * 1 2 3 25 25 H 1.09000 * 109.47503 * 240.00426 * 2 1 3 26 26 H 1.09007 * 109.47698 * 119.99770 * 2 1 3 27 27 H 1.08998 * 109.68322 * 307.45090 * 5 3 2 28 28 H 1.08999 * 109.68081 * 68.00044 * 5 3 2 29 29 H 0.96996 * 119.99858 * 180.02562 * 12 11 9 30 30 H 1.09001 * 109.46953 * 60.00461 * 19 17 6 31 31 H 1.09000 * 109.47432 * 179.97438 * 19 17 6 32 32 H 1.08997 * 109.47454 * 300.00106 * 19 17 6 33 33 H 1.08998 * 109.51250 * 172.22725 * 20 17 6 34 34 H 1.09006 * 109.50998 * 292.32403 * 20 17 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6057 1.9822 -0.8415 5 6 3.5679 1.4454 -0.1233 6 7 4.0462 2.8242 0.0657 7 6 4.8930 3.3917 -0.8158 8 8 5.2025 4.5623 -0.6950 9 6 5.4404 2.6001 -1.9187 10 1 5.1044 1.5856 -2.0739 11 6 6.3999 3.1583 -2.7726 12 7 6.8062 4.3861 -2.5851 13 14 7.0979 2.1483 -4.1804 14 1 6.2643 2.3471 -5.3932 15 1 8.4899 2.5840 -4.4597 16 1 7.0945 0.7109 -3.8076 17 6 3.5731 3.5646 1.2460 18 1 3.8655 4.6115 1.1643 19 6 4.1798 2.9575 2.5126 20 6 2.0448 3.4584 1.3027 21 8 1.6653 2.0825 1.2223 22 1 -0.3633 0.5139 -0.8899 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8901 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 3.9992 0.7991 0.6411 28 1 3.8571 1.0889 -1.1120 29 1 7.4705 4.7728 -3.1767 30 1 5.2669 3.0181 2.4598 31 1 3.8276 3.5087 3.3845 32 1 3.8777 1.9135 2.5958 33 1 1.6851 3.8811 2.2408 34 1 1.6105 4.0062 0.4664 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000403865681.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:24:11 Heat of formation + Delta-G solvation = -90.198592 kcal Electronic energy + Delta-G solvation = -16666.448150 eV Core-core repulsion = 13985.134544 eV Total energy + Delta-G solvation = -2681.313606 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.38059 -36.74091 -34.17065 -33.46397 -32.46302 -30.92529 -27.61456 -26.25267 -25.65016 -23.32491 -21.63918 -20.43698 -18.48503 -16.69733 -16.12783 -15.96477 -14.91715 -14.70796 -14.50225 -14.02471 -13.50625 -13.25950 -12.97222 -12.61398 -12.34625 -11.82768 -11.69910 -11.56013 -11.23942 -11.04306 -11.02012 -10.81152 -10.76170 -10.62267 -10.27706 -10.08118 -9.84391 -9.32726 -8.87803 -7.62154 -7.20379 -6.23593 -4.68956 3.10899 3.17891 3.20912 4.01274 4.12367 4.42845 4.51781 5.08137 5.25800 5.36442 5.45671 5.54203 5.63809 5.72315 5.78192 5.95364 6.00345 6.05013 6.08160 6.12062 6.20888 6.22692 6.35075 6.41381 6.53993 6.60108 6.79341 7.40884 7.54183 7.61736 8.08533 8.31164 8.97976 9.38811 10.53207 10.71665 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.028290 B = 0.009075 C = 0.007360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.502461 B = 3084.564684 C = 3803.192591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.113 4.113 3 C 0.075 3.925 4 H 0.057 0.943 5 C 0.096 3.904 6 N -0.639 5.639 7 C 0.561 3.439 8 O -0.577 6.577 9 C -0.544 4.544 10 H 0.072 0.928 11 C 0.087 3.913 12 N -0.768 5.768 13 Si 0.907 3.093 14 H -0.271 1.271 15 H -0.279 1.279 16 H -0.264 1.264 17 C 0.107 3.893 18 H 0.097 0.903 19 C -0.149 4.149 20 C 0.057 3.943 21 O -0.382 6.382 22 H 0.050 0.950 23 H 0.049 0.951 24 H 0.059 0.941 25 H 0.076 0.924 26 H 0.068 0.932 27 H 0.050 0.950 28 H 0.097 0.903 29 H 0.269 0.731 30 H 0.054 0.946 31 H 0.051 0.949 32 H 0.054 0.946 33 H 0.091 0.909 34 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.458 -7.327 4.443 12.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.151 4.151 3 C 0.016 3.984 4 H 0.075 0.925 5 C -0.028 4.028 6 N -0.378 5.378 7 C 0.367 3.633 8 O -0.459 6.459 9 C -0.580 4.580 10 H 0.090 0.910 11 C -0.132 4.132 12 N -0.396 5.396 13 Si 0.731 3.269 14 H -0.197 1.197 15 H -0.204 1.204 16 H -0.188 1.188 17 C 0.002 3.998 18 H 0.115 0.885 19 C -0.208 4.208 20 C -0.020 4.020 21 O -0.301 6.301 22 H 0.069 0.931 23 H 0.069 0.931 24 H 0.078 0.922 25 H 0.095 0.905 26 H 0.087 0.913 27 H 0.068 0.932 28 H 0.115 0.885 29 H 0.080 0.920 30 H 0.073 0.927 31 H 0.070 0.930 32 H 0.074 0.926 33 H 0.109 0.891 34 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -8.233 -6.595 4.579 11.499 hybrid contribution 0.518 -0.386 -0.871 1.084 sum -7.715 -6.980 3.708 11.045 Atomic orbital electron populations 1.21695 0.95615 1.00982 1.02120 1.21491 0.96300 0.94706 1.02634 1.22594 0.95270 0.93461 0.87085 0.92459 1.22060 0.92231 0.85779 1.02754 1.48326 1.51157 1.13175 1.25161 1.18264 0.76948 0.86832 0.81266 1.90587 1.62163 1.17261 1.75931 1.20956 1.24445 1.00043 1.12602 0.90985 1.25732 0.95316 0.94598 0.97591 1.70015 1.23322 1.12841 1.33451 0.86385 0.78485 0.80674 0.81339 1.19683 1.20401 1.18833 1.21399 0.92725 0.98810 0.86826 0.88548 1.21983 1.01038 1.01060 0.96718 1.22923 0.94976 0.82798 1.01333 1.87810 1.79955 1.23980 1.38340 0.93057 0.93141 0.92160 0.90536 0.91280 0.93216 0.88498 0.92042 0.92735 0.92977 0.92648 0.89084 0.93398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.70 9.81 37.15 0.36 -1.34 16 2 C -0.11 -1.47 5.65 -26.73 -0.15 -1.63 16 3 C 0.07 1.23 2.78 -26.58 -0.07 1.16 16 4 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 5 C 0.10 1.85 5.40 -3.53 -0.02 1.83 16 6 N -0.64 -14.80 2.71 -166.39 -0.45 -15.25 16 7 C 0.56 16.03 7.63 -12.99 -0.10 15.93 16 8 O -0.58 -18.70 14.51 5.20 0.08 -18.62 16 9 C -0.54 -15.19 8.86 -35.63 -0.32 -15.51 16 10 H 0.07 1.83 5.76 -52.49 -0.30 1.53 16 11 C 0.09 2.42 5.50 -17.36 -0.10 2.33 16 12 N -0.77 -22.93 11.84 55.55 0.66 -22.27 16 13 Si 0.91 19.93 29.56 -169.99 -5.02 14.90 16 14 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 15 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 16 H -0.26 -5.58 7.11 56.52 0.40 -5.18 16 17 C 0.11 2.16 3.24 -67.42 -0.22 1.94 16 18 H 0.10 2.16 7.06 -51.93 -0.37 1.79 16 19 C -0.15 -2.62 9.24 37.16 0.34 -2.28 16 20 C 0.06 0.97 6.36 37.31 0.24 1.21 16 21 O -0.38 -6.47 9.56 -35.23 -0.34 -6.81 16 22 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 23 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 24 H 0.06 0.74 7.83 -51.92 -0.41 0.33 16 25 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 26 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 27 H 0.05 0.91 7.67 -51.93 -0.40 0.51 16 28 H 0.10 1.90 5.50 -51.93 -0.29 1.62 16 29 H 0.27 7.28 8.29 -40.82 -0.34 6.94 16 30 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 32 H 0.05 0.95 7.23 -51.93 -0.38 0.57 16 33 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 34 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 276.58 15.07 4.17 4.17 Total: -1.00 -33.18 276.58 -6.01 -39.19 By element: Atomic # 1 Polarization: 6.12 SS G_CDS: -5.07 Total: 1.04 kcal Atomic # 6 Polarization: 3.67 SS G_CDS: -0.03 Total: 3.65 kcal Atomic # 7 Polarization: -37.73 SS G_CDS: 0.21 Total: -37.52 kcal Atomic # 8 Polarization: -25.17 SS G_CDS: -0.26 Total: -25.43 kcal Atomic # 14 Polarization: 19.93 SS G_CDS: -5.02 Total: 14.90 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -33.18 -6.01 -39.19 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000403865681.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.010 kcal (2) G-P(sol) polarization free energy of solvation -33.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds