Wall clock time and date at job start Mon Mar 30 2020 17:24:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53003 * 109.47208 * 2 1 4 4 H 1.08994 * 109.51233 * 305.00474 * 3 2 1 5 5 C 1.53297 * 109.51390 * 184.89718 * 3 2 1 6 6 N 1.47156 * 108.38408 * 187.72132 * 5 3 2 7 7 C 1.34771 * 120.98185 * 230.51193 * 6 5 3 8 8 O 1.21684 * 119.99897 * 174.76787 * 7 6 5 9 9 C 1.46380 * 120.00213 * 354.77523 * 7 6 5 10 10 H 1.07994 * 119.99745 * 4.99780 * 9 7 6 11 11 C 1.40046 * 120.00063 * 184.99800 * 9 7 6 12 12 N 1.30680 * 120.00044 * 359.97438 * 11 9 7 13 13 Si 1.86795 * 120.00033 * 180.02562 * 11 9 7 14 14 H 1.48506 * 109.47326 * 90.00118 * 13 11 9 15 15 H 1.48506 * 109.47104 * 210.00008 * 13 11 9 16 16 H 1.48497 * 109.47059 * 330.00201 * 13 11 9 17 17 C 1.47151 * 118.03517 * 50.53952 * 6 5 3 18 18 H 1.08999 * 109.68390 * 189.74145 * 17 6 5 19 19 C 1.53001 * 109.68225 * 69.22013 * 17 6 5 20 20 C 1.53299 * 108.38285 * 309.46663 * 17 6 5 21 21 O 1.42954 * 109.22524 * 52.30049 * 20 17 6 22 22 H 1.08997 * 109.47111 * 59.99710 * 1 2 3 23 23 H 1.09001 * 109.46982 * 180.02562 * 1 2 3 24 24 H 1.09008 * 109.47328 * 299.99844 * 1 2 3 25 25 H 1.09000 * 109.47503 * 240.00426 * 2 1 3 26 26 H 1.09007 * 109.47698 * 119.99770 * 2 1 3 27 27 H 1.08998 * 109.68322 * 307.45090 * 5 3 2 28 28 H 1.08999 * 109.68081 * 68.00044 * 5 3 2 29 29 H 0.96996 * 119.99858 * 180.02562 * 12 11 9 30 30 H 1.09001 * 109.46953 * 60.00461 * 19 17 6 31 31 H 1.09000 * 109.47432 * 179.97438 * 19 17 6 32 32 H 1.08997 * 109.47454 * 300.00106 * 19 17 6 33 33 H 1.08998 * 109.51250 * 172.22725 * 20 17 6 34 34 H 1.09006 * 109.50998 * 292.32403 * 20 17 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6057 1.9822 -0.8415 5 6 3.5679 1.4454 -0.1233 6 7 4.0462 2.8242 0.0657 7 6 4.8930 3.3917 -0.8158 8 8 5.2025 4.5623 -0.6950 9 6 5.4404 2.6001 -1.9187 10 1 5.1044 1.5856 -2.0739 11 6 6.3999 3.1583 -2.7726 12 7 6.8062 4.3861 -2.5851 13 14 7.0979 2.1483 -4.1804 14 1 6.2643 2.3471 -5.3932 15 1 8.4899 2.5840 -4.4597 16 1 7.0945 0.7109 -3.8076 17 6 3.5731 3.5646 1.2460 18 1 3.8655 4.6115 1.1643 19 6 4.1798 2.9575 2.5126 20 6 2.0448 3.4584 1.3027 21 8 1.6653 2.0825 1.2223 22 1 -0.3633 0.5139 -0.8899 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8901 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 3.9992 0.7991 0.6411 28 1 3.8571 1.0889 -1.1120 29 1 7.4705 4.7728 -3.1767 30 1 5.2669 3.0181 2.4598 31 1 3.8276 3.5087 3.3845 32 1 3.8777 1.9135 2.5958 33 1 1.6851 3.8811 2.2408 34 1 1.6105 4.0062 0.4664 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000403865681.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:24:11 Heat of formation + Delta-G solvation = -113.321476 kcal Electronic energy + Delta-G solvation = -16667.450833 eV Core-core repulsion = 13985.134544 eV Total energy + Delta-G solvation = -2682.316289 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.96394 -38.66021 -35.70147 -34.98894 -34.59639 -32.37114 -29.16003 -28.23262 -27.13866 -24.68751 -23.26028 -21.87914 -20.22654 -18.57120 -17.96796 -17.50821 -16.64334 -16.31244 -15.88959 -15.71985 -15.04118 -14.63349 -14.45303 -14.35390 -13.66375 -13.52655 -13.34085 -13.09418 -12.77570 -12.73633 -12.65358 -12.16979 -12.10562 -12.03417 -11.85712 -11.78028 -11.27565 -10.99171 -10.83014 -9.81503 -9.05540 -8.32221 -6.87859 1.38176 1.39597 1.54962 2.20438 2.42389 2.62091 2.86359 3.53477 3.80062 3.95109 4.11262 4.14729 4.22203 4.37163 4.47058 4.57386 4.66891 4.69719 4.73619 4.82862 4.92728 5.02766 5.07778 5.16166 5.24407 5.33396 5.34355 5.50204 5.70072 6.07884 6.22203 6.35225 6.84269 7.36455 8.42140 8.63675 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.028290 B = 0.009075 C = 0.007360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.502461 B = 3084.564684 C = 3803.192591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.108 4.108 3 C 0.079 3.921 4 H 0.044 0.956 5 C 0.093 3.907 6 N -0.644 5.644 7 C 0.541 3.459 8 O -0.632 6.632 9 C -0.569 4.569 10 H 0.094 0.906 11 C 0.028 3.972 12 N -0.823 5.823 13 Si 0.996 3.004 14 H -0.261 1.261 15 H -0.274 1.274 16 H -0.245 1.245 17 C 0.097 3.903 18 H 0.063 0.937 19 C -0.137 4.137 20 C 0.067 3.933 21 O -0.376 6.376 22 H 0.049 0.951 23 H 0.072 0.928 24 H 0.052 0.948 25 H 0.090 0.910 26 H 0.077 0.923 27 H 0.062 0.938 28 H 0.090 0.910 29 H 0.274 0.726 30 H 0.029 0.971 31 H 0.085 0.915 32 H 0.064 0.936 33 H 0.128 0.872 34 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.523 -9.881 4.428 14.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.146 4.146 3 C 0.020 3.980 4 H 0.062 0.938 5 C -0.030 4.030 6 N -0.381 5.381 7 C 0.348 3.652 8 O -0.519 6.519 9 C -0.605 4.605 10 H 0.111 0.889 11 C -0.187 4.187 12 N -0.453 5.453 13 Si 0.815 3.185 14 H -0.186 1.186 15 H -0.199 1.199 16 H -0.169 1.169 17 C -0.007 4.007 18 H 0.081 0.919 19 C -0.196 4.196 20 C -0.011 4.011 21 O -0.295 6.295 22 H 0.068 0.932 23 H 0.091 0.909 24 H 0.071 0.929 25 H 0.109 0.891 26 H 0.096 0.904 27 H 0.081 0.919 28 H 0.108 0.892 29 H 0.084 0.916 30 H 0.048 0.952 31 H 0.104 0.896 32 H 0.083 0.917 33 H 0.146 0.854 34 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -9.350 -9.197 4.605 13.900 hybrid contribution 0.808 0.430 -0.793 1.211 sum -8.541 -8.767 3.812 12.820 Atomic orbital electron populations 1.21664 0.94323 1.02349 1.01697 1.21515 0.97340 0.91931 1.03778 1.22628 0.93027 0.95688 0.86613 0.93779 1.22269 0.94350 0.83615 1.02786 1.48204 1.50046 1.14770 1.25078 1.18689 0.77614 0.86458 0.82447 1.90532 1.64387 1.19445 1.77550 1.21487 1.24941 1.01074 1.12979 0.88854 1.27020 0.95209 0.95751 1.00713 1.70194 1.24358 1.15449 1.35277 0.85045 0.77519 0.79203 0.76743 1.18555 1.19853 1.16852 1.21645 0.95294 0.96957 0.86846 0.91882 1.21877 0.99298 1.01891 0.96492 1.22896 0.92226 0.83125 1.02862 1.87835 1.79533 1.23674 1.38420 0.93213 0.90895 0.92885 0.89111 0.90434 0.91933 0.89201 0.91575 0.95155 0.89613 0.91665 0.85380 0.94544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.87 9.81 71.98 0.71 -2.16 16 2 C -0.11 -2.48 5.65 30.59 0.17 -2.31 16 3 C 0.08 2.47 2.78 30.69 0.09 2.56 16 4 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 5 C 0.09 3.50 5.40 86.35 0.47 3.96 16 6 N -0.64 -30.35 2.71 -798.56 -2.17 -32.52 16 7 C 0.54 32.16 7.63 86.36 0.66 32.82 16 8 O -0.63 -43.28 14.51 -4.30 -0.06 -43.34 16 9 C -0.57 -32.31 8.86 24.83 0.22 -32.09 16 10 H 0.09 4.71 5.76 -2.91 -0.02 4.69 16 11 C 0.03 1.57 5.50 85.30 0.47 2.04 16 12 N -0.82 -50.90 11.84 21.84 0.26 -50.64 16 13 Si 1.00 40.76 29.56 68.60 2.03 42.78 16 14 H -0.26 -10.17 7.11 99.48 0.71 -9.46 16 15 H -0.27 -10.87 7.11 99.48 0.71 -10.16 16 16 H -0.25 -9.21 7.11 99.48 0.71 -8.50 16 17 C 0.10 3.94 3.24 44.97 0.15 4.08 16 18 H 0.06 2.97 7.06 -2.39 -0.02 2.95 16 19 C -0.14 -4.68 9.24 71.98 0.67 -4.02 16 20 C 0.07 2.17 6.36 72.08 0.46 2.63 16 21 O -0.38 -11.87 9.56 -148.98 -1.42 -13.30 16 22 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 23 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 24 H 0.05 1.14 7.83 -2.38 -0.02 1.13 16 25 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 26 H 0.08 1.68 8.14 -2.38 -0.02 1.66 16 27 H 0.06 2.19 7.67 -2.39 -0.02 2.17 16 28 H 0.09 3.47 5.50 -2.39 -0.01 3.45 16 29 H 0.27 15.35 8.29 -92.71 -0.77 14.58 16 30 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 32 H 0.06 2.09 7.23 -2.39 -0.02 2.07 16 33 H 0.13 3.24 8.14 -2.39 -0.02 3.22 16 34 H 0.04 1.27 8.14 -2.38 -0.02 1.25 16 Total: -1.00 -75.31 276.58 3.76 -71.55 By element: Atomic # 1 Polarization: 16.86 SS G_CDS: 1.08 Total: 17.94 kcal Atomic # 6 Polarization: 3.47 SS G_CDS: 4.05 Total: 7.52 kcal Atomic # 7 Polarization: -81.25 SS G_CDS: -1.91 Total: -83.15 kcal Atomic # 8 Polarization: -55.15 SS G_CDS: -1.49 Total: -56.64 kcal Atomic # 14 Polarization: 40.76 SS G_CDS: 2.03 Total: 42.78 kcal Total: -75.31 3.76 -71.55 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000403865681.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.769 kcal (2) G-P(sol) polarization free energy of solvation -75.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds