Wall clock time and date at job start Mon Mar 30 2020 17:24:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86806 * 119.99712 * 2 1 4 4 H 1.48500 * 109.46903 * 274.39106 * 3 2 1 5 5 H 1.48493 * 109.47274 * 34.39469 * 3 2 1 6 6 H 1.48498 * 109.47145 * 154.39629 * 3 2 1 7 7 C 1.38807 * 120.00184 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00002 * 164.34184 * 7 2 1 9 9 N 1.36935 * 120.00326 * 344.33474 * 7 2 1 10 10 C 1.47152 * 120.98211 * 332.25724 * 9 7 2 11 11 C 1.53293 * 108.38741 * 230.51212 * 10 9 7 12 12 O 1.42969 * 109.21977 * 307.69637 * 11 10 9 13 13 C 1.42962 * 114.16580 * 62.57890 * 12 11 10 14 14 C 1.47145 * 120.98438 * 152.22989 * 9 7 2 15 15 H 1.09003 * 109.68601 * 249.25555 * 14 9 7 16 16 C 1.53005 * 109.68350 * 9.76489 * 14 9 7 17 17 H 1.08995 * 109.82269 * 305.70629 * 16 14 9 18 18 C 1.54384 * 109.90761 * 184.76625 * 16 14 9 19 19 C 1.55307 * 102.24953 * 219.09102 * 18 16 14 20 20 C 1.54941 * 100.94552 * 34.13422 * 19 18 16 21 21 O 1.43244 * 109.82670 * 66.58846 * 16 14 9 22 22 H 0.97004 * 120.00475 * 359.97438 * 1 2 3 23 23 H 1.08999 * 109.67969 * 350.23366 * 10 9 7 24 24 H 1.09002 * 109.68151 * 110.78050 * 10 9 7 25 25 H 1.08996 * 109.51570 * 67.61360 * 11 10 9 26 26 H 1.08996 * 109.51683 * 187.72611 * 11 10 9 27 27 H 1.09002 * 109.51165 * 177.49766 * 13 12 11 28 28 H 1.08995 * 109.51106 * 57.34711 * 13 12 11 29 29 H 1.08997 * 110.84851 * 337.27767 * 18 16 14 30 30 H 1.08991 * 110.84536 * 100.90047 * 18 16 14 31 31 H 1.09006 * 111.12078 * 276.21458 * 19 18 16 32 32 H 1.09001 * 111.12018 * 152.05408 * 19 18 16 33 33 H 1.08999 * 110.30637 * 204.64373 * 20 19 18 34 34 H 1.08996 * 110.39563 * 82.51145 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4047 2.1001 -1.3960 5 1 1.4971 2.6241 0.7908 6 1 3.5910 1.4153 0.6050 7 6 2.0102 -1.2021 -0.0005 8 1 3.0602 -1.2193 -0.2530 9 7 1.3638 -2.3662 0.3191 10 6 0.1945 -2.3626 1.2125 11 6 0.4188 -3.4123 2.3068 12 8 0.7491 -4.6632 1.6984 13 6 1.9628 -4.6443 0.9431 14 6 1.8175 -3.6575 -0.2209 15 1 1.0845 -4.0353 -0.9339 16 6 3.1684 -3.4791 -0.9169 17 1 3.0969 -2.6907 -1.6660 18 6 3.5927 -4.8029 -1.5883 19 6 5.1208 -4.8371 -1.3128 20 6 5.1837 -4.1612 0.0800 21 8 4.1716 -3.1424 0.0486 22 1 -0.4851 0.8400 0.0004 23 1 0.0820 -1.3778 1.6660 24 1 -0.7023 -2.6101 0.6444 25 1 1.2366 -3.0950 2.9536 26 1 -0.4907 -3.5228 2.8973 27 1 2.1638 -5.6417 0.5520 28 1 2.7862 -4.3314 1.5851 29 1 3.0950 -5.6522 -1.1204 30 1 3.3922 -4.7762 -2.6593 31 1 5.6671 -4.2566 -2.0562 32 1 5.4891 -5.8621 -1.2690 33 1 6.1651 -3.7146 0.2397 34 1 4.9665 -4.8863 0.8643 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000586778695.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:24:25 Heat of formation + Delta-G solvation = -84.237951 kcal Electronic energy + Delta-G solvation = -17185.730517 eV Core-core repulsion = 14504.675384 eV Total energy + Delta-G solvation = -2681.055133 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.97762 -39.22273 -36.30547 -33.73166 -32.90296 -32.16925 -29.36529 -28.39858 -25.24150 -24.93795 -22.72470 -22.05902 -21.06414 -18.62923 -17.97752 -17.15356 -16.71222 -16.51992 -16.19520 -15.83976 -15.48563 -15.08083 -14.56261 -14.52794 -14.06353 -13.57982 -13.02866 -12.98104 -12.64795 -12.51943 -12.30237 -12.12818 -12.03922 -11.83706 -11.68536 -11.58074 -11.23421 -10.84614 -10.52523 -10.12133 -8.64925 -7.84231 -5.29164 1.43583 1.45495 1.56612 2.50260 2.99240 3.06603 3.30505 3.48731 3.71306 4.03632 4.05996 4.13255 4.32073 4.35059 4.44011 4.49960 4.57853 4.61840 4.84535 4.88039 4.93432 4.96871 5.00817 5.08438 5.15360 5.25416 5.39922 5.56586 5.77817 6.27972 6.36130 6.41386 7.14775 7.83537 8.37481 9.22769 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.023616 B = 0.012415 C = 0.009091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.331159 B = 2254.856290 C = 3079.153268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C -0.058 4.058 3 Si 0.963 3.037 4 H -0.286 1.286 5 H -0.292 1.292 6 H -0.274 1.274 7 C -0.237 4.237 8 H 0.078 0.922 9 N -0.604 5.604 10 C 0.145 3.855 11 C 0.050 3.950 12 O -0.402 6.402 13 C 0.061 3.939 14 C 0.122 3.878 15 H 0.028 0.972 16 C 0.095 3.905 17 H 0.056 0.944 18 C -0.146 4.146 19 C -0.141 4.141 20 C 0.033 3.967 21 O -0.389 6.389 22 H 0.247 0.753 23 H 0.065 0.935 24 H 0.001 0.999 25 H 0.041 0.959 26 H 0.107 0.893 27 H 0.112 0.888 28 H 0.047 0.953 29 H 0.090 0.910 30 H 0.091 0.909 31 H 0.079 0.921 32 H 0.110 0.890 33 H 0.088 0.912 34 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.598 -11.037 -0.456 13.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.252 4.252 3 Si 0.791 3.209 4 H -0.213 1.213 5 H -0.219 1.219 6 H -0.199 1.199 7 C -0.367 4.367 8 H 0.095 0.905 9 N -0.329 5.329 10 C 0.020 3.980 11 C -0.028 4.028 12 O -0.321 6.321 13 C -0.017 4.017 14 C 0.016 3.984 15 H 0.046 0.954 16 C 0.037 3.963 17 H 0.074 0.926 18 C -0.184 4.184 19 C -0.178 4.178 20 C -0.044 4.044 21 O -0.309 6.309 22 H 0.057 0.943 23 H 0.083 0.917 24 H 0.019 0.981 25 H 0.059 0.941 26 H 0.125 0.875 27 H 0.130 0.870 28 H 0.065 0.935 29 H 0.108 0.892 30 H 0.110 0.890 31 H 0.098 0.902 32 H 0.128 0.872 33 H 0.106 0.894 34 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 8.398 -10.879 -0.311 13.747 hybrid contribution 0.000 1.441 -0.211 1.457 sum 8.398 -9.438 -0.522 12.644 Atomic orbital electron populations 1.70178 1.06481 1.25499 1.56735 1.25776 0.96047 1.01252 1.02175 0.85323 0.78120 0.80087 0.77349 1.21313 1.21888 1.19896 1.19587 0.92693 0.84891 1.39537 0.90487 1.44310 1.33447 1.02307 1.52832 1.21255 0.88333 0.97781 0.90676 1.23163 1.00349 0.84400 0.94874 1.87752 1.42999 1.32862 1.68450 1.23024 0.86149 0.99684 0.92823 1.21714 0.94648 0.87473 0.94560 0.95421 1.22595 0.86921 0.97025 0.89765 0.92605 1.23221 0.96932 0.96077 1.02154 1.23212 0.95092 1.03052 0.96442 1.23635 0.92131 0.90803 0.97783 1.88611 1.35513 1.46033 1.60752 0.94345 0.91686 0.98078 0.94103 0.87493 0.86985 0.93461 0.89177 0.89015 0.90234 0.87189 0.89360 0.91917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.32 11.17 21.65 0.24 -57.07 16 2 C -0.06 -3.38 4.96 84.86 0.42 -2.96 16 3 Si 0.96 46.85 29.58 68.60 2.03 48.87 16 4 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 5 H -0.29 -14.17 7.11 99.48 0.71 -13.46 16 6 H -0.27 -12.98 7.11 99.48 0.71 -12.28 16 7 C -0.24 -13.46 8.44 84.03 0.71 -12.75 16 8 H 0.08 4.36 5.55 -2.91 -0.02 4.35 16 9 N -0.60 -31.82 3.04 -673.74 -2.05 -33.87 16 10 C 0.15 7.47 5.42 86.35 0.47 7.94 16 11 C 0.05 2.08 6.99 72.08 0.50 2.58 16 12 O -0.40 -16.36 10.74 -148.98 -1.60 -17.96 16 13 C 0.06 2.26 5.82 72.08 0.42 2.68 16 14 C 0.12 5.25 2.93 44.97 0.13 5.38 16 15 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 16 C 0.09 3.55 2.45 31.07 0.08 3.63 16 17 H 0.06 2.43 7.16 -2.39 -0.02 2.41 16 18 C -0.15 -3.66 6.38 31.86 0.20 -3.46 16 19 C -0.14 -2.86 7.15 32.05 0.23 -2.63 16 20 C 0.03 0.85 7.58 72.65 0.55 1.40 16 21 O -0.39 -14.99 8.54 -148.98 -1.27 -16.26 16 22 H 0.25 14.60 8.31 -92.71 -0.77 13.83 16 23 H 0.06 3.68 6.22 -2.39 -0.01 3.66 16 24 H 0.00 0.06 8.14 -2.39 -0.02 0.04 16 25 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 26 H 0.11 3.80 8.14 -2.39 -0.02 3.78 16 27 H 0.11 3.28 6.70 -2.39 -0.02 3.27 16 28 H 0.05 1.82 7.02 -2.39 -0.02 1.80 16 29 H 0.09 2.01 6.28 -2.39 -0.01 1.99 16 30 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 31 H 0.08 1.57 8.14 -2.38 -0.02 1.55 16 32 H 0.11 1.55 8.14 -2.39 -0.02 1.53 16 33 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 34 H 0.06 1.49 8.01 -2.39 -0.02 1.47 16 Total: -1.00 -68.63 262.90 2.14 -66.49 By element: Atomic # 1 Polarization: 6.91 SS G_CDS: 1.08 Total: 7.99 kcal Atomic # 6 Polarization: -1.90 SS G_CDS: 3.71 Total: 1.81 kcal Atomic # 7 Polarization: -89.13 SS G_CDS: -1.81 Total: -90.94 kcal Atomic # 8 Polarization: -31.35 SS G_CDS: -2.87 Total: -34.23 kcal Atomic # 14 Polarization: 46.85 SS G_CDS: 2.03 Total: 48.87 kcal Total: -68.63 2.14 -66.49 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000586778695.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.752 kcal (2) G-P(sol) polarization free energy of solvation -68.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds