Wall clock time and date at job start Mon Mar 30 2020 17:26:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46893 * 111.00348 * 2 1 4 4 C 1.53008 * 109.46905 * 293.95343 * 3 2 1 5 5 C 1.50698 * 109.46890 * 180.02562 * 4 3 2 6 6 H 1.08002 * 120.00592 * 359.97438 * 5 4 3 7 7 C 1.37880 * 119.99940 * 180.02562 * 5 4 3 8 8 N 1.31513 * 119.99883 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 120.00028 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47139 * 89.99717 * 9 7 5 11 11 H 1.48507 * 109.46701 * 209.99632 * 9 7 5 12 12 H 1.48500 * 109.47107 * 329.99353 * 9 7 5 13 13 C 1.46901 * 111.00148 * 123.95611 * 2 1 3 14 14 C 1.50696 * 109.47342 * 163.98429 * 13 2 1 15 15 C 1.28879 * 121.25502 * 96.04119 * 14 13 2 16 16 C 1.51426 * 117.50216 * 180.02562 * 15 14 13 17 17 S 1.83830 * 102.53931 * 16.28199 * 16 15 14 18 18 C 1.51428 * 121.25000 * 275.75654 * 14 13 2 19 19 H 1.09002 * 109.46556 * 301.50233 * 1 2 3 20 20 H 1.08997 * 109.47150 * 61.50282 * 1 2 3 21 21 H 1.09001 * 109.47313 * 181.50865 * 1 2 3 22 22 H 1.08996 * 109.47242 * 53.95507 * 3 2 1 23 23 H 1.09004 * 109.47240 * 173.95863 * 3 2 1 24 24 H 1.09000 * 109.47129 * 299.99656 * 4 3 2 25 25 H 1.08995 * 109.46834 * 60.00205 * 4 3 2 26 26 H 0.97003 * 120.00010 * 180.02562 * 8 7 5 27 27 H 1.09004 * 109.47134 * 283.98541 * 13 2 1 28 28 H 1.09008 * 109.47293 * 43.98086 * 13 2 1 29 29 H 1.08009 * 121.24457 * 359.97438 * 15 14 13 30 30 H 1.08994 * 110.79272 * 134.54860 * 16 15 14 31 31 H 1.09000 * 110.79163 * 257.82482 * 16 15 14 32 32 H 1.08997 * 110.79971 * 281.97299 * 18 14 13 33 33 H 1.08999 * 110.79110 * 45.45692 * 18 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3713 0.0000 4 6 1.6315 2.0573 -1.3183 5 6 2.1722 3.4640 -1.3186 6 1 2.7202 3.8321 -0.4639 7 6 1.9664 4.2815 -2.4097 8 7 1.2986 3.8334 -3.4503 9 14 2.6372 6.0249 -2.4103 10 1 4.0086 6.0274 -2.9799 11 1 1.7577 6.8933 -3.2335 12 1 2.6784 6.5399 -1.0181 13 6 1.9955 -0.7660 1.1375 14 6 3.4504 -1.0798 0.9017 15 6 4.3827 -0.3405 1.3970 16 6 5.8158 -0.7338 1.1060 17 16 5.6315 -1.8990 -0.3038 18 6 3.8721 -2.2791 0.0790 19 1 -0.3632 0.5370 0.8763 20 1 -0.3633 0.4903 -0.9031 21 1 -0.3634 -1.0273 0.0271 22 1 1.5612 1.9273 0.8309 23 1 3.0798 1.3443 0.1082 24 1 2.0659 1.5014 -2.1492 25 1 0.5473 2.0844 -1.4265 26 1 1.1541 4.4084 -4.2181 27 1 1.8938 -0.1780 2.0498 28 1 1.4353 -1.6955 1.2402 29 1 4.1505 0.5274 1.9965 30 1 6.4042 0.1362 0.8147 31 1 6.2630 -1.2308 1.9668 32 1 3.7895 -3.1965 0.6617 33 1 3.2841 -2.3464 -0.8364 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595888769.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:26:03 Heat of formation + Delta-G solvation = -4.275584 kcal Electronic energy + Delta-G solvation = -13732.944798 eV Core-core repulsion = 11498.109964 eV Total energy + Delta-G solvation = -2234.834833 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 227.104 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.52547 -37.00827 -35.07688 -31.92213 -30.43249 -28.65987 -27.21421 -25.78845 -23.97253 -21.52059 -19.39335 -18.54660 -17.65798 -16.68511 -16.53246 -16.34138 -15.52577 -15.39010 -14.99387 -14.36763 -14.13129 -14.08903 -13.69675 -13.28210 -12.94420 -12.87724 -12.68780 -12.53095 -12.38950 -12.26104 -11.77116 -11.44101 -11.29753 -11.22211 -10.54059 -10.06887 -9.16511 -8.75082 -8.19903 -6.31038 0.87015 0.91890 1.39022 1.40341 1.41051 1.51517 2.40058 3.13604 3.23216 3.56507 3.72657 4.23298 4.32655 4.34035 4.41666 4.48123 4.49080 4.57645 4.63230 4.69105 4.76002 4.84043 5.05463 5.14010 5.27817 5.45584 5.63579 5.71141 5.80313 6.10512 6.28419 6.33839 6.86424 7.37934 8.92323 Molecular weight = 227.10amu Principal moments of inertia in cm(-1) A = 0.026421 B = 0.006914 C = 0.006049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1059.500196 B = 4048.902178 C = 4627.449032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.554 5.554 3 C 0.080 3.920 4 C 0.038 3.962 5 C -0.543 4.543 6 H 0.059 0.941 7 C 0.001 3.999 8 N -0.932 5.932 9 Si 0.964 3.036 10 H -0.274 1.274 11 H -0.281 1.281 12 H -0.261 1.261 13 C 0.102 3.898 14 C -0.119 4.119 15 C -0.164 4.164 16 C -0.024 4.024 17 S -0.355 6.355 18 C -0.012 4.012 19 H 0.027 0.973 20 H 0.048 0.952 21 H 0.090 0.910 22 H 0.020 0.980 23 H 0.063 0.937 24 H -0.014 1.014 25 H -0.005 1.005 26 H 0.263 0.737 27 H 0.050 0.950 28 H 0.103 0.897 29 H 0.141 0.859 30 H 0.109 0.891 31 H 0.125 0.875 32 H 0.124 0.876 33 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.844 -10.725 12.250 16.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 N -0.278 5.278 3 C -0.048 4.048 4 C 0.000 4.000 5 C -0.582 4.582 6 H 0.078 0.922 7 C -0.197 4.197 8 N -0.572 5.572 9 Si 0.788 3.212 10 H -0.199 1.199 11 H -0.206 1.206 12 H -0.185 1.185 13 C -0.027 4.027 14 C -0.121 4.121 15 C -0.184 4.184 16 C -0.171 4.171 17 S -0.130 6.130 18 C -0.160 4.160 19 H 0.046 0.954 20 H 0.067 0.933 21 H 0.108 0.892 22 H 0.038 0.962 23 H 0.081 0.919 24 H 0.005 0.995 25 H 0.013 0.987 26 H 0.072 0.928 27 H 0.068 0.932 28 H 0.122 0.878 29 H 0.159 0.841 30 H 0.128 0.872 31 H 0.143 0.857 32 H 0.142 0.858 33 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 4.722 -11.317 10.764 16.317 hybrid contribution -0.819 1.766 0.932 2.158 sum 3.903 -9.551 11.696 15.597 Atomic orbital electron populations 1.22356 0.86616 1.02405 1.00356 1.61912 1.08459 1.14427 1.42977 1.21994 0.99025 0.86591 0.97146 1.18892 0.94921 0.93583 0.92579 1.21623 1.35226 0.98996 1.02326 0.92244 1.25957 0.95421 1.03223 0.95074 1.70111 1.42013 1.38276 1.06783 0.85468 0.78257 0.78854 0.78602 1.19912 1.20642 1.18540 1.20972 0.91148 0.98978 0.91597 1.21418 0.96339 0.95908 0.98387 1.22701 0.93027 1.00187 1.02535 1.23133 0.97705 0.99550 0.96681 1.88220 1.18988 1.60387 1.45368 1.23035 0.90702 0.99632 1.02587 0.95411 0.93314 0.89186 0.96198 0.91861 0.99543 0.98707 0.92799 0.93209 0.87841 0.84121 0.87245 0.85711 0.85832 0.88052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.95 9.28 127.69 1.18 2.14 16 2 N -0.55 -19.13 4.71 -927.04 -4.36 -23.49 16 3 C 0.08 3.36 4.73 86.31 0.41 3.77 16 4 C 0.04 2.04 4.90 29.85 0.15 2.19 16 5 C -0.54 -31.43 9.11 25.60 0.23 -31.20 16 6 H 0.06 3.27 7.74 -2.91 -0.02 3.25 16 7 C 0.00 0.07 5.46 84.66 0.46 0.53 16 8 N -0.93 -57.80 13.29 21.45 0.28 -57.52 16 9 Si 0.96 44.76 29.54 68.60 2.03 46.79 16 10 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 11 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 12 H -0.26 -11.48 7.11 99.48 0.71 -10.77 16 13 C 0.10 2.58 5.24 85.56 0.45 3.03 16 14 C -0.12 -3.03 5.02 -14.14 -0.07 -3.10 16 15 C -0.16 -4.02 8.51 27.99 0.24 -3.79 16 16 C -0.02 -0.53 7.46 71.47 0.53 0.00 16 17 S -0.36 -10.11 23.55 -56.49 -1.33 -11.44 16 18 C -0.01 -0.30 7.32 71.47 0.52 0.22 16 19 H 0.03 0.81 8.13 -2.39 -0.02 0.79 16 20 H 0.05 1.82 6.54 -2.39 -0.02 1.80 16 21 H 0.09 2.19 7.97 -2.39 -0.02 2.17 16 22 H 0.02 0.82 8.11 -2.39 -0.02 0.80 16 23 H 0.06 2.65 6.22 -2.38 -0.01 2.64 16 24 H -0.01 -0.85 8.14 -2.39 -0.02 -0.87 16 25 H -0.01 -0.31 6.58 -2.39 -0.02 -0.33 16 26 H 0.26 15.31 8.31 -92.71 -0.77 14.54 16 27 H 0.05 1.19 7.95 -2.38 -0.02 1.18 16 28 H 0.10 2.09 7.88 -2.38 -0.02 2.07 16 29 H 0.14 3.25 8.02 -2.91 -0.02 3.22 16 30 H 0.11 2.43 8.14 -2.39 -0.02 2.41 16 31 H 0.12 2.13 8.14 -2.39 -0.02 2.11 16 32 H 0.12 2.32 8.14 -2.39 -0.02 2.30 16 33 H 0.10 2.75 8.14 -2.39 -0.02 2.73 16 Total: -1.00 -67.28 283.58 1.79 -65.50 By element: Atomic # 1 Polarization: 5.31 SS G_CDS: 1.07 Total: 6.38 kcal Atomic # 6 Polarization: -30.31 SS G_CDS: 4.11 Total: -26.21 kcal Atomic # 7 Polarization: -76.93 SS G_CDS: -4.08 Total: -81.01 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.79 kcal Atomic # 16 Polarization: -10.11 SS G_CDS: -1.33 Total: -11.44 kcal Total: -67.28 1.79 -65.50 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595888769.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.219 kcal (2) G-P(sol) polarization free energy of solvation -67.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.495 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds