Wall clock time and date at job start Mon Mar 30 2020 17:27:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86798 * 120.00013 * 2 1 4 4 H 1.48500 * 109.47198 * 269.99977 * 3 2 1 5 5 H 1.48500 * 109.47294 * 29.99994 * 3 2 1 6 6 H 1.48501 * 109.47198 * 150.00014 * 3 2 1 7 7 C 1.38810 * 120.00173 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00196 * 196.90134 * 7 2 1 9 9 N 1.36939 * 120.00067 * 16.89559 * 7 2 1 10 10 C 1.47158 * 120.99315 * 206.18067 * 9 7 2 11 11 C 1.53295 * 108.38556 * 230.59577 * 10 9 7 12 12 O 1.42977 * 109.25813 * 307.57089 * 11 10 9 13 13 C 1.42935 * 114.14944 * 62.39122 * 12 11 10 14 14 C 1.53068 * 109.59812 * 57.87042 * 13 12 11 15 15 C 1.53115 * 109.16129 * 63.20592 * 14 13 12 16 16 O 1.42900 * 109.41377 * 57.46181 * 15 14 13 17 17 C 1.42903 * 114.13070 * 298.81958 * 16 15 14 18 18 C 1.53076 * 109.55626 * 177.69634 * 13 12 11 19 19 C 1.47166 * 120.98648 * 26.15803 * 9 7 2 20 20 H 0.96993 * 119.99733 * 0.02562 * 1 2 3 21 21 H 1.08995 * 109.68183 * 110.86839 * 10 9 7 22 22 H 1.08999 * 109.67851 * 350.31844 * 10 9 7 23 23 H 1.08999 * 109.51568 * 67.51899 * 11 10 9 24 24 H 1.09005 * 109.51512 * 187.62088 * 11 10 9 25 25 H 1.08993 * 109.51936 * 183.10866 * 14 13 12 26 26 H 1.08997 * 109.52146 * 303.30079 * 14 13 12 27 27 H 1.08996 * 109.47983 * 297.47322 * 15 14 13 28 28 H 1.09003 * 109.47712 * 177.43834 * 15 14 13 29 29 H 1.09005 * 109.48289 * 301.21667 * 17 16 15 30 30 H 1.09000 * 109.50072 * 181.18184 * 17 16 15 31 31 H 1.08993 * 109.52523 * 56.69256 * 18 13 12 32 32 H 1.08997 * 109.52280 * 176.83167 * 18 13 12 33 33 H 1.09003 * 109.67684 * 249.38412 * 19 9 7 34 34 H 1.08998 * 109.68085 * 9.92416 * 19 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0553 -1.2224 0.2714 9 7 1.3700 -2.3623 -0.3457 10 6 1.8348 -3.6637 0.1600 11 6 1.9827 -4.6197 -1.0291 12 8 0.7656 -4.6311 -1.7793 13 6 0.4194 -3.3677 -2.3511 14 6 1.5520 -2.8889 -3.2626 15 6 1.7135 -3.8743 -4.4234 16 8 0.4762 -3.9828 -5.1300 17 6 -0.6076 -4.4735 -4.3383 18 6 -0.8631 -3.5121 -3.1743 19 6 0.1961 -2.3447 -1.2332 20 1 -0.4849 0.8400 -0.0004 21 1 1.1069 -4.0648 0.8652 22 1 2.7981 -3.5422 0.6554 23 1 2.8004 -4.2839 -1.6669 24 1 2.1949 -5.6247 -0.6642 25 1 1.3112 -1.9008 -3.6545 26 1 2.4809 -2.8401 -2.6944 27 1 1.9966 -4.8520 -4.0336 28 1 2.4883 -3.5144 -5.1005 29 1 -0.3549 -5.4590 -3.9470 30 1 -1.5043 -4.5458 -4.9537 31 1 -1.6586 -3.9078 -2.5430 32 1 -1.1576 -2.5376 -3.5637 33 1 -0.6965 -2.6094 -0.6663 34 1 0.0765 -1.3506 -1.6639 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610860026.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:27:09 Heat of formation + Delta-G solvation = -68.163493 kcal Electronic energy + Delta-G solvation = -17290.195551 eV Core-core repulsion = 14609.837459 eV Total energy + Delta-G solvation = -2680.358092 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.80792 -37.26195 -34.41207 -32.62516 -31.25042 -30.70277 -28.23964 -26.41860 -23.53421 -23.26176 -22.65665 -20.43935 -18.70527 -16.88371 -16.13668 -15.62801 -15.48738 -14.66814 -14.46431 -14.28332 -14.01571 -13.47987 -13.30780 -12.80002 -12.21851 -11.94767 -11.76477 -11.43643 -11.00351 -10.88180 -10.86348 -10.63712 -10.50488 -10.24326 -9.97589 -9.87171 -9.48731 -9.25412 -8.77273 -8.51308 -6.72191 -5.83594 -3.26893 3.34059 3.41023 3.42103 4.20994 4.35771 4.45574 5.12816 5.33013 5.35115 5.40981 5.51041 5.53302 5.67473 5.76906 5.89281 5.95434 5.97458 6.02518 6.19104 6.28560 6.34623 6.44693 6.56372 6.71640 6.77330 6.83887 7.11722 7.50267 7.53767 7.71254 7.97178 8.34353 9.12217 9.75340 10.32931 11.24202 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.032916 B = 0.009852 C = 0.009030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.442055 B = 2841.520144 C = 3099.948691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.003 3.997 3 Si 0.903 3.097 4 H -0.287 1.287 5 H -0.291 1.291 6 H -0.279 1.279 7 C -0.253 4.253 8 H 0.068 0.932 9 N -0.593 5.593 10 C 0.110 3.890 11 C 0.045 3.955 12 O -0.384 6.384 13 C 0.093 3.907 14 C -0.167 4.167 15 C 0.065 3.935 16 O -0.390 6.390 17 C 0.066 3.934 18 C -0.137 4.137 19 C 0.159 3.841 20 H 0.255 0.745 21 H 0.025 0.975 22 H 0.060 0.940 23 H 0.046 0.954 24 H 0.079 0.921 25 H 0.074 0.926 26 H 0.084 0.916 27 H 0.048 0.952 28 H 0.084 0.916 29 H 0.053 0.947 30 H 0.086 0.914 31 H 0.076 0.924 32 H 0.082 0.918 33 H 0.026 0.974 34 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.277 -7.633 -6.280 9.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.196 4.196 3 Si 0.733 3.267 4 H -0.214 1.214 5 H -0.217 1.217 6 H -0.204 1.204 7 C -0.382 4.382 8 H 0.086 0.914 9 N -0.317 5.317 10 C -0.017 4.017 11 C -0.033 4.033 12 O -0.304 6.304 13 C 0.052 3.948 14 C -0.204 4.204 15 C -0.011 4.011 16 O -0.309 6.309 17 C -0.010 4.010 18 C -0.175 4.175 19 C 0.033 3.967 20 H 0.065 0.935 21 H 0.042 0.958 22 H 0.079 0.921 23 H 0.064 0.936 24 H 0.097 0.903 25 H 0.093 0.907 26 H 0.103 0.897 27 H 0.066 0.934 28 H 0.102 0.898 29 H 0.071 0.929 30 H 0.104 0.896 31 H 0.095 0.905 32 H 0.100 0.900 33 H 0.044 0.956 34 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 1.048 -7.584 -6.460 10.017 hybrid contribution 0.599 1.104 0.534 1.365 sum 1.647 -6.480 -5.926 8.934 Atomic orbital electron populations 1.70025 1.05254 1.25612 1.53847 1.25029 0.95318 0.98406 1.00849 0.86276 0.79091 0.83586 0.77761 1.21352 1.21691 1.20418 1.19189 0.92570 0.84552 1.41921 0.91442 1.44068 1.33604 1.01163 1.52885 1.21583 0.98446 0.87696 0.93930 1.23021 0.86948 0.99404 0.93932 1.87785 1.41667 1.31767 1.69158 1.22188 0.93070 0.85690 0.93833 1.22563 1.01331 0.99711 0.96829 1.22534 0.85904 0.98583 0.94103 1.87830 1.18695 1.86701 1.37719 1.22490 0.89572 0.96463 0.92504 1.22091 0.97364 1.01100 0.96912 1.21350 0.88941 0.97612 0.88779 0.93521 0.95759 0.92132 0.93581 0.90304 0.90688 0.89729 0.93367 0.89763 0.92853 0.89615 0.90528 0.89990 0.95639 0.88823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.04 11.14 55.49 0.62 -25.43 16 2 C 0.00 0.07 4.95 -17.43 -0.09 -0.01 16 3 Si 0.90 21.53 29.59 -169.99 -5.03 16.50 16 4 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 6 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 7 C -0.25 -6.86 9.65 -15.06 -0.15 -7.00 16 8 H 0.07 1.79 7.88 -52.49 -0.41 1.38 16 9 N -0.59 -14.85 2.65 -171.89 -0.46 -15.31 16 10 C 0.11 2.32 6.73 -3.53 -0.02 2.30 16 11 C 0.05 0.81 6.61 37.31 0.25 1.06 16 12 O -0.38 -7.49 9.22 -35.23 -0.32 -7.82 16 13 C 0.09 1.83 0.68 -90.46 -0.06 1.77 16 14 C -0.17 -3.11 4.46 -26.64 -0.12 -3.23 16 15 C 0.07 1.05 6.70 37.22 0.25 1.30 16 16 O -0.39 -6.57 10.76 -35.23 -0.38 -6.95 16 17 C 0.07 1.02 6.70 37.22 0.25 1.26 16 18 C -0.14 -2.34 5.14 -26.63 -0.14 -2.48 16 19 C 0.16 3.83 4.10 -3.59 -0.01 3.81 16 20 H 0.25 7.10 8.31 -40.82 -0.34 6.77 16 21 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 22 H 0.06 1.21 7.96 -51.93 -0.41 0.80 16 23 H 0.05 0.81 6.21 -51.93 -0.32 0.49 16 24 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 25 H 0.07 1.47 8.14 -51.93 -0.42 1.05 16 26 H 0.08 1.67 6.07 -51.93 -0.32 1.35 16 27 H 0.05 0.76 7.83 -51.93 -0.41 0.35 16 28 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 29 H 0.05 0.82 7.83 -51.93 -0.41 0.41 16 30 H 0.09 1.10 8.14 -51.93 -0.42 0.67 16 31 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 32 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 33 H 0.03 0.67 8.14 -51.93 -0.42 0.24 16 34 H 0.09 2.49 6.14 -51.93 -0.32 2.17 16 LS Contribution 263.76 15.07 3.97 3.97 Total: -1.00 -29.65 263.76 -6.55 -36.20 By element: Atomic # 1 Polarization: 5.16 SS G_CDS: -5.11 Total: 0.05 kcal Atomic # 6 Polarization: -1.37 SS G_CDS: 0.16 Total: -1.22 kcal Atomic # 7 Polarization: -40.89 SS G_CDS: 0.16 Total: -40.73 kcal Atomic # 8 Polarization: -14.07 SS G_CDS: -0.70 Total: -14.77 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.03 Total: 16.50 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -29.65 -6.55 -36.20 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610860026.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.966 kcal (2) G-P(sol) polarization free energy of solvation -29.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds