Wall clock time and date at job start Mon Mar 30 2020 17:27:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.47635 * 2 1 4 4 C 1.53003 * 109.46642 * 240.00292 * 2 1 3 5 5 C 1.50692 * 109.47408 * 64.45265 * 4 2 1 6 6 H 1.08007 * 119.99843 * 5.07167 * 5 4 2 7 7 C 1.37879 * 120.00364 * 185.06997 * 5 4 2 8 8 N 1.31509 * 119.99786 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 120.00227 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.47323 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.46950 * 120.00137 * 9 7 5 12 12 H 1.48494 * 109.47233 * 240.00388 * 9 7 5 13 13 N 1.46898 * 109.46757 * 120.00851 * 2 1 3 14 14 C 1.46842 * 111.00517 * 60.83963 * 13 2 1 15 15 C 1.53035 * 109.52663 * 185.83789 * 14 13 2 16 16 C 1.53127 * 109.27864 * 300.82536 * 15 14 13 17 17 C 1.53115 * 109.16160 * 57.65029 * 16 15 14 18 18 H 1.08998 * 109.50594 * 62.32663 * 17 16 15 19 19 C 1.52997 * 109.50177 * 182.40748 * 17 16 15 20 20 O 1.42904 * 109.46943 * 294.92241 * 19 17 16 21 21 C 1.46851 * 110.99474 * 185.09345 * 13 2 1 22 22 H 1.09006 * 109.46817 * 59.99156 * 1 2 3 23 23 H 1.08996 * 109.47665 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.47342 * 299.99939 * 1 2 3 25 25 H 1.09006 * 109.47190 * 184.45113 * 4 2 1 26 26 H 1.09002 * 109.47433 * 304.44876 * 4 2 1 27 27 H 0.97005 * 119.99798 * 180.02562 * 8 7 5 28 28 H 1.09007 * 109.45997 * 65.82252 * 14 13 2 29 29 H 1.08992 * 109.45298 * 305.85473 * 14 13 2 30 30 H 1.09000 * 109.50221 * 180.88378 * 15 14 13 31 31 H 1.08994 * 109.53386 * 60.77957 * 15 14 13 32 32 H 1.09007 * 109.51839 * 297.74846 * 16 15 14 33 33 H 1.08998 * 109.52388 * 177.55878 * 16 15 14 34 34 H 1.09004 * 109.47031 * 174.92254 * 19 17 16 35 35 H 1.08998 * 109.47216 * 54.91964 * 19 17 16 36 36 H 0.96704 * 113.99370 * 180.02562 * 20 19 17 37 37 H 1.09007 * 109.49362 * 54.15855 * 21 13 2 38 38 H 1.09003 * 109.43114 * 294.19132 * 21 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 1.6296 0.0500 -2.4772 6 1 1.1339 1.0041 -2.3751 7 6 1.8871 -0.4623 -3.7312 8 7 2.4902 -1.6243 -3.8556 9 14 1.3779 0.4934 -5.2532 10 1 0.7212 1.7613 -4.8450 11 1 2.5794 0.7996 -6.0704 12 1 0.4287 -0.3205 -6.0542 13 7 2.0196 -0.6927 1.1993 14 6 1.5652 -2.0888 1.2232 15 6 1.9689 -2.7356 2.5501 16 6 3.4913 -2.6720 2.7010 17 6 3.9434 -1.2111 2.6244 18 1 3.5050 -0.6507 3.4501 19 6 5.4692 -1.1432 2.7142 20 8 5.8915 -1.6007 4.0005 21 6 3.4824 -0.6078 1.2957 22 1 -0.3633 0.5140 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 3.1270 -0.7909 -1.2104 26 1 1.6129 -1.7233 -1.2902 27 1 2.6717 -1.9845 -4.7378 28 1 2.0245 -2.6343 0.3987 29 1 0.4807 -2.1195 1.1192 30 1 1.6452 -3.7763 2.5610 31 1 1.4988 -2.1996 3.3746 32 1 3.9610 -3.2412 1.8987 33 1 3.7798 -3.0925 3.6644 34 1 5.7963 -0.1135 2.5693 35 1 5.9071 -1.7756 1.9419 36 1 6.8499 -1.5846 4.1284 37 1 3.7903 0.4367 1.2448 38 1 3.9328 -1.1596 0.4706 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000616015708.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:27:30 Heat of formation + Delta-G solvation = -92.156821 kcal Electronic energy + Delta-G solvation = -16641.837969 eV Core-core repulsion = 14096.272543 eV Total energy + Delta-G solvation = -2545.565426 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.55825 -37.98743 -36.11922 -34.48887 -32.43774 -31.39531 -28.95549 -26.72590 -25.56607 -24.60557 -23.09501 -20.98215 -20.06859 -18.58903 -18.20033 -16.87753 -16.53868 -16.17617 -15.60771 -15.36798 -15.05298 -14.86329 -14.60047 -14.09335 -13.86713 -13.48063 -13.33458 -12.96792 -12.82422 -12.68614 -12.51180 -12.28210 -11.97760 -11.76265 -11.63896 -11.47883 -11.33447 -11.13674 -11.05127 -10.79542 -10.55485 -9.07247 -8.20018 -6.30403 1.38093 1.38940 1.51834 2.39443 2.92828 3.12881 3.53413 3.79240 3.91482 4.05370 4.24963 4.33804 4.45794 4.49446 4.55398 4.58691 4.62019 4.68759 4.74308 4.87936 4.95025 4.99563 5.09229 5.14092 5.19813 5.26024 5.30446 5.43808 5.47119 5.52880 5.61845 5.76390 6.06970 6.31271 6.40226 6.86548 6.92798 7.38175 8.91289 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.034775 B = 0.006514 C = 0.006067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.992913 B = 4297.650194 C = 4614.026762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.087 3.913 3 H 0.066 0.934 4 C 0.010 3.990 5 C -0.527 4.527 6 H 0.063 0.937 7 C -0.001 4.001 8 N -0.936 5.936 9 Si 0.961 3.039 10 H -0.260 1.260 11 H -0.281 1.281 12 H -0.280 1.280 13 N -0.527 5.527 14 C 0.050 3.950 15 C -0.108 4.108 16 C -0.106 4.106 17 C -0.077 4.077 18 H 0.081 0.919 19 C 0.086 3.914 20 O -0.584 6.584 21 C 0.063 3.937 22 H 0.053 0.947 23 H 0.044 0.956 24 H 0.066 0.934 25 H -0.016 1.016 26 H -0.007 1.007 27 H 0.261 0.739 28 H 0.008 0.992 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.044 0.956 33 H 0.077 0.923 34 H 0.057 0.943 35 H 0.043 0.957 36 H 0.396 0.604 37 H 0.072 0.928 38 H 0.014 0.986 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.931 0.404 13.090 13.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.021 4.021 3 H 0.084 0.916 4 C -0.029 4.029 5 C -0.566 4.566 6 H 0.081 0.919 7 C -0.198 4.198 8 N -0.576 5.576 9 Si 0.786 3.214 10 H -0.183 1.183 11 H -0.207 1.207 12 H -0.206 1.206 13 N -0.250 5.250 14 C -0.078 4.078 15 C -0.146 4.146 16 C -0.144 4.144 17 C -0.096 4.096 18 H 0.100 0.900 19 C 0.007 3.993 20 O -0.392 6.392 21 C -0.065 4.065 22 H 0.072 0.928 23 H 0.063 0.937 24 H 0.085 0.915 25 H 0.002 0.998 26 H 0.011 0.989 27 H 0.070 0.930 28 H 0.026 0.974 29 H 0.094 0.906 30 H 0.095 0.905 31 H 0.094 0.906 32 H 0.063 0.937 33 H 0.095 0.905 34 H 0.075 0.925 35 H 0.062 0.938 36 H 0.246 0.754 37 H 0.091 0.909 38 H 0.032 0.968 Dipole moment (debyes) X Y Z Total from point charges 2.142 0.460 13.471 13.647 hybrid contribution 0.955 -0.199 -2.188 2.395 sum 3.097 0.260 11.283 11.703 Atomic orbital electron populations 1.21637 0.93828 1.01150 1.01232 1.21674 0.96252 0.96909 0.87292 0.91586 1.19532 0.94118 0.95300 0.93914 1.21607 1.37704 1.05510 0.91768 0.91876 1.25946 0.95243 0.95914 1.02695 1.70116 1.43589 1.19854 1.24081 0.85446 0.77976 0.79023 0.78913 1.18341 1.20673 1.20586 1.62326 1.10028 1.14322 1.38334 1.22143 1.00384 0.88399 0.96913 1.21571 0.95971 1.00548 0.96484 1.21517 0.95674 0.95538 1.01675 1.21066 0.94358 0.97133 0.97004 0.90013 1.22058 0.94062 0.98439 0.84715 1.86404 1.29660 1.89073 1.34092 1.21948 0.88385 1.00409 0.95806 0.92754 0.93688 0.91510 0.99824 0.98866 0.93004 0.97393 0.90603 0.90455 0.90564 0.93716 0.90460 0.92485 0.93846 0.75388 0.90911 0.96791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.59 8.80 71.98 0.63 -3.96 16 2 C 0.09 3.65 2.38 44.92 0.11 3.75 16 3 H 0.07 2.80 8.08 -2.39 -0.02 2.78 16 4 C 0.01 0.51 3.73 29.85 0.11 0.62 16 5 C -0.53 -29.65 8.30 25.60 0.21 -29.43 16 6 H 0.06 3.40 7.22 -2.91 -0.02 3.38 16 7 C 0.00 -0.04 5.46 84.66 0.46 0.43 16 8 N -0.94 -57.32 13.29 21.45 0.28 -57.03 16 9 Si 0.96 44.32 29.54 68.60 2.03 46.35 16 10 H -0.26 -11.33 7.11 99.48 0.71 -10.63 16 11 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 12 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 13 N -0.53 -19.37 4.64 -871.11 -4.04 -23.42 16 14 C 0.05 1.76 4.64 86.33 0.40 2.16 16 15 C -0.11 -3.02 6.09 30.65 0.19 -2.84 16 16 C -0.11 -2.96 5.15 30.68 0.16 -2.80 16 17 C -0.08 -2.17 2.59 -10.74 -0.03 -2.19 16 18 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 19 C 0.09 2.03 6.43 71.98 0.46 2.49 16 20 O -0.58 -12.54 13.25 -148.98 -1.97 -14.51 16 21 C 0.06 2.18 4.32 86.32 0.37 2.55 16 22 H 0.05 2.16 7.02 -2.38 -0.02 2.15 16 23 H 0.04 1.70 6.30 -2.39 -0.02 1.68 16 24 H 0.07 2.16 8.14 -2.39 -0.02 2.15 16 25 H -0.02 -0.95 6.45 -2.38 -0.02 -0.96 16 26 H -0.01 -0.41 6.77 -2.39 -0.02 -0.42 16 27 H 0.26 15.06 8.31 -92.70 -0.77 14.29 16 28 H 0.01 0.33 6.72 -2.38 -0.02 0.31 16 29 H 0.08 2.63 6.03 -2.39 -0.01 2.61 16 30 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 31 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 32 H 0.04 1.34 8.14 -2.38 -0.02 1.32 16 33 H 0.08 1.97 7.90 -2.39 -0.02 1.95 16 34 H 0.06 1.22 8.14 -2.38 -0.02 1.20 16 35 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.40 4.62 9.12 -74.05 -0.68 3.94 16 37 H 0.07 2.42 8.08 -2.38 -0.02 2.40 16 38 H 0.01 0.56 6.63 -2.39 -0.02 0.55 16 Total: -1.00 -65.61 291.54 -0.27 -65.88 By element: Atomic # 1 Polarization: 11.60 SS G_CDS: 0.35 Total: 11.95 kcal Atomic # 6 Polarization: -32.30 SS G_CDS: 3.08 Total: -29.22 kcal Atomic # 7 Polarization: -76.69 SS G_CDS: -3.76 Total: -80.45 kcal Atomic # 8 Polarization: -12.54 SS G_CDS: -1.97 Total: -14.51 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.35 kcal Total: -65.61 -0.27 -65.88 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000616015708.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.277 kcal (2) G-P(sol) polarization free energy of solvation -65.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds