Wall clock time and date at job start Mon Mar 30 2020 17:30:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35794 * 116.99937 * 2 1 4 4 C 1.38997 * 120.87238 * 0.21744 * 3 2 1 5 5 C 1.38250 * 119.17676 * 180.27818 * 4 3 2 6 6 Cl 1.73601 * 119.51265 * 179.72194 * 5 4 3 7 7 N 1.32067 * 120.97576 * 359.74846 * 5 4 3 8 8 C 1.31909 * 121.92005 * 359.97438 * 7 5 4 9 9 C 1.38781 * 120.71120 * 0.02562 * 8 7 5 10 10 N 1.39485 * 120.52141 * 179.97438 * 9 8 7 11 11 C 1.36806 * 120.00143 * 359.72121 * 10 9 8 12 12 H 1.08004 * 119.99598 * 0.02562 * 11 10 9 13 13 C 1.38765 * 120.00132 * 180.02562 * 11 10 9 14 14 N 1.31617 * 120.00058 * 359.97438 * 13 11 10 15 15 Si 1.86805 * 119.99773 * 180.02562 * 13 11 10 16 16 H 1.48497 * 109.47322 * 359.97438 * 15 13 11 17 17 H 1.48498 * 109.47165 * 119.99921 * 15 13 11 18 18 H 1.48501 * 109.47099 * 239.99746 * 15 13 11 19 19 H 1.08998 * 109.47197 * 179.97438 * 1 2 3 20 20 H 1.09004 * 109.47617 * 300.00442 * 1 2 3 21 21 H 1.09007 * 109.47157 * 60.00311 * 1 2 3 22 22 H 1.08002 * 120.40940 * 0.02562 * 4 3 2 23 23 H 1.08008 * 119.64271 * 179.97438 * 8 7 5 24 24 H 0.96996 * 120.00304 * 179.97438 * 10 9 8 25 25 H 0.97000 * 119.99714 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0455 1.2099 0.0000 4 6 1.3063 2.3870 0.0045 5 6 1.9700 3.5998 -0.0015 6 17 1.0554 5.0753 -0.0032 7 7 3.2896 3.6523 -0.0065 8 6 4.0311 2.5614 -0.0054 9 6 3.4427 1.3045 0.0005 10 7 4.2306 0.1535 0.0010 11 6 5.5946 0.2581 -0.0101 12 1 6.0613 1.2321 -0.0188 13 6 6.3784 -0.8869 -0.0101 14 7 5.8096 -2.0738 0.0011 15 14 8.2409 -0.7439 -0.0244 16 1 8.6272 0.6899 -0.0351 17 1 8.7970 -1.3978 1.1873 18 1 8.7792 -1.4101 -1.2376 19 1 -0.3633 -1.0276 -0.0005 20 1 -0.3634 0.5139 0.8899 21 1 -0.3634 0.5138 -0.8901 22 1 0.2267 2.3546 0.0085 23 1 5.1078 2.6472 -0.0100 24 1 3.8114 -0.7212 0.0055 25 1 6.3575 -2.8742 0.0007 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001155533607.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:30:15 Heat of formation + Delta-G solvation = -10.916748 kcal Electronic energy + Delta-G solvation = -13340.698166 eV Core-core repulsion = 10766.439544 eV Total energy + Delta-G solvation = -2574.258622 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 228.041 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.74921 -37.41528 -36.04502 -35.24135 -32.25722 -30.40661 -28.48524 -26.90931 -25.04659 -22.22407 -21.60172 -18.33916 -17.72524 -16.54040 -15.68700 -15.30761 -14.76226 -14.44038 -13.72157 -13.67516 -13.49548 -13.36334 -12.14761 -11.91460 -11.62615 -11.31975 -10.95582 -10.82982 -10.59137 -10.53065 -10.42995 -10.31642 -8.97606 -8.75176 -8.32126 -6.85500 -6.82080 -3.92019 1.97793 2.26103 2.83401 3.04985 3.07294 3.11876 3.76333 3.87463 4.48285 4.94334 4.99247 5.32746 5.45362 5.47985 5.67225 5.78374 6.10942 6.30105 6.50410 6.60454 7.04434 7.28911 7.46889 7.91091 8.48498 8.85871 9.05169 9.25575 10.32381 Molecular weight = 228.04amu Principal moments of inertia in cm(-1) A = 0.033545 B = 0.007681 C = 0.006271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.487915 B = 3644.249700 C = 4463.575775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.314 6.314 3 C 0.044 3.956 4 C -0.175 4.175 5 C 0.059 3.941 6 Cl -0.084 7.084 7 N -0.441 5.441 8 C 0.012 3.988 9 C 0.143 3.857 10 N -0.522 5.522 11 C -0.302 4.302 12 H 0.110 0.890 13 C 0.025 3.975 14 N -0.874 5.874 15 Si 0.938 3.062 16 H -0.263 1.263 17 H -0.277 1.277 18 H -0.277 1.277 19 H 0.092 0.908 20 H 0.049 0.951 21 H 0.049 0.951 22 H 0.126 0.874 23 H 0.159 0.841 24 H 0.409 0.591 25 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.323 2.968 -0.008 6.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.227 6.227 3 C -0.012 4.012 4 C -0.198 4.198 5 C -0.109 4.109 6 Cl -0.056 7.056 7 N -0.152 5.152 8 C -0.155 4.155 9 C 0.016 3.984 10 N -0.122 5.122 11 C -0.432 4.432 12 H 0.128 0.872 13 C -0.181 4.181 14 N -0.509 5.509 15 Si 0.764 3.236 16 H -0.187 1.187 17 H -0.203 1.203 18 H -0.203 1.203 19 H 0.111 0.889 20 H 0.068 0.932 21 H 0.068 0.932 22 H 0.144 0.856 23 H 0.176 0.824 24 H 0.245 0.755 25 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -5.549 3.286 -0.010 6.449 hybrid contribution -0.137 -0.991 -0.001 1.000 sum -5.686 2.295 -0.010 6.132 Atomic orbital electron populations 1.22895 0.79399 1.03035 1.00837 1.85962 1.20429 1.26357 1.89983 1.18338 0.90345 0.84130 1.08357 1.21088 0.99567 0.90644 1.08541 1.20075 0.89073 0.84711 1.17072 1.98270 1.72110 1.37459 1.97754 1.66468 1.05444 1.32885 1.10450 1.21539 0.98816 0.84187 1.11008 1.18304 0.87034 0.90068 1.03041 1.40999 1.05334 1.05045 1.60801 1.19933 0.80626 0.95258 1.47344 0.87244 1.25453 1.01812 0.94436 0.96424 1.69721 1.37453 0.97976 1.45707 0.85656 0.80532 0.79234 0.78225 1.18664 1.20254 1.20260 0.88918 0.93216 0.93222 0.85639 0.82398 0.75532 0.91005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 37. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 9.84 101.05 0.99 1.45 15 2 O -0.31 -6.02 9.86 -19.09 -0.19 -6.20 15 3 C 0.04 0.91 6.76 -38.62 -0.26 0.65 15 4 C -0.17 -3.33 8.87 -39.30 -0.35 -3.68 15 5 C 0.06 1.20 7.27 -17.45 -0.13 1.07 15 6 Cl -0.08 -1.46 29.10 -51.86 -1.51 -2.97 15 7 N -0.44 -9.67 10.33 -10.21 -0.11 -9.78 15 8 C 0.01 0.27 10.47 -17.32 -0.18 0.09 15 9 C 0.14 3.23 6.66 -83.50 -0.56 2.67 15 10 N -0.52 -12.59 5.44 -9.41 -0.05 -12.64 15 11 C -0.30 -7.34 9.57 -15.14 -0.14 -7.49 15 12 H 0.11 2.52 5.71 -52.48 -0.30 2.22 15 13 C 0.02 0.60 5.50 -17.45 -0.10 0.50 15 14 N -0.87 -22.23 13.05 55.49 0.72 -21.51 15 15 Si 0.94 18.71 29.55 -169.99 -5.02 13.68 15 16 H -0.26 -5.09 7.11 56.52 0.40 -4.69 15 17 H -0.28 -5.53 7.11 56.52 0.40 -5.12 15 18 H -0.28 -5.53 7.11 56.52 0.40 -5.12 15 19 H 0.09 1.03 8.14 -51.93 -0.42 0.60 15 20 H 0.05 0.61 7.70 -51.93 -0.40 0.22 15 21 H 0.05 0.61 7.72 -51.93 -0.40 0.21 15 22 H 0.13 2.02 6.46 -52.49 -0.34 1.68 15 23 H 0.16 3.35 5.98 -52.48 -0.31 3.04 15 24 H 0.41 10.19 7.35 -40.82 -0.30 9.89 15 25 H 0.28 6.65 8.31 -40.82 -0.34 6.31 15 LS Contribution 240.95 15.07 3.63 3.63 Total: -1.00 -26.42 240.95 -4.85 -31.27 By element: Atomic # 1 Polarization: 10.85 SS G_CDS: -1.61 Total: 9.24 kcal Atomic # 6 Polarization: -4.01 SS G_CDS: -0.72 Total: -4.73 kcal Atomic # 7 Polarization: -44.49 SS G_CDS: 0.57 Total: -43.92 kcal Atomic # 8 Polarization: -6.02 SS G_CDS: -0.19 Total: -6.20 kcal Atomic # 14 Polarization: 18.71 SS G_CDS: -5.02 Total: 13.68 kcal Atomic # 17 Polarization: -1.46 SS G_CDS: -1.51 Total: -2.97 kcal Total LS contribution 3.63 Total: 3.63 kcal Total: -26.42 -4.85 -31.27 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155533607.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.356 kcal (2) G-P(sol) polarization free energy of solvation -26.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds