Wall clock time and date at job start Mon Mar 30 2020 17:29:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.33859 * 126.91915 * 2 1 4 4 N 1.20821 * 111.94606 * 180.31785 * 3 2 1 5 5 C 1.29929 * 112.09357 * 359.71772 * 4 3 2 6 6 C 1.37125 * 126.91576 * 179.84991 * 2 1 3 7 7 C 1.47854 * 128.21877 * 359.97438 * 6 2 1 8 8 C 1.39993 * 119.45495 * 179.68215 * 7 6 2 9 9 C 1.36528 * 119.46412 * 179.68976 * 8 7 6 10 10 C 1.41345 * 118.42302 * 0.59627 * 9 8 7 11 11 C 1.41050 * 120.54652 * 179.70409 * 10 9 8 12 12 H 1.07998 * 120.00010 * 24.59152 * 11 10 9 13 13 C 1.39958 * 119.99777 * 204.59794 * 11 10 9 14 14 N 1.30831 * 120.00175 * 17.23056 * 13 11 10 15 15 Si 1.86805 * 119.99763 * 197.23029 * 13 11 10 16 16 H 1.48494 * 109.47122 * 265.17673 * 15 13 11 17 17 H 1.48504 * 109.47049 * 25.17900 * 15 13 11 18 18 H 1.48494 * 109.46884 * 145.17427 * 15 13 11 19 19 C 1.40921 * 118.90833 * 359.42885 * 10 9 8 20 20 N 1.31288 * 120.39862 * 0.27517 * 19 10 9 21 21 H 1.08998 * 109.47227 * 270.15113 * 1 2 3 22 22 H 1.08999 * 109.46819 * 30.14951 * 1 2 3 23 23 H 1.08997 * 109.47357 * 150.15127 * 1 2 3 24 24 H 1.08002 * 126.87672 * 180.02562 * 5 4 3 25 25 H 1.08001 * 120.26500 * 0.02562 * 8 7 6 26 26 H 1.07994 * 120.79168 * 180.29465 * 9 8 7 27 27 H 0.97002 * 120.00386 * 180.02562 * 14 13 11 28 28 H 1.07999 * 119.79964 * 180.29682 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3111 1.0702 0.0000 4 7 3.4782 0.7580 -0.0062 5 6 3.6393 -0.5312 -0.0053 6 6 2.3306 -1.0963 0.0029 7 6 1.9513 -2.5254 0.0071 8 6 2.9529 -3.5035 0.0028 9 6 2.6029 -4.8231 0.0132 10 6 1.2289 -5.1547 0.0151 11 6 0.8170 -6.5037 0.0194 12 1 1.4730 -7.2674 0.4105 13 6 -0.4417 -6.8527 -0.4833 14 7 -1.0937 -6.0181 -1.2515 15 14 -1.1909 -8.5100 -0.0572 16 1 -0.8795 -9.4852 -1.1329 17 1 -0.6252 -8.9932 1.2280 18 1 -2.6635 -8.3690 0.0721 19 6 0.2772 -4.1153 0.0185 20 7 0.6638 -2.8607 0.0145 21 1 -0.3633 0.0027 1.0276 22 1 -0.3633 0.8886 -0.5162 23 1 -0.3634 -0.8913 -0.5115 24 1 4.5769 -1.0672 -0.0095 25 1 3.9940 -3.2164 -0.0031 26 1 3.3578 -5.5953 0.0149 27 1 -1.9662 -6.2598 -1.5996 28 1 -0.7764 -4.3524 0.0249 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242600259.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:29:07 Heat of formation + Delta-G solvation = 61.057223 kcal Electronic energy + Delta-G solvation = -14985.156969 eV Core-core repulsion = 12389.140743 eV Total energy + Delta-G solvation = -2596.016226 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.080 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -45.73095 -40.20386 -36.28357 -34.87383 -34.04196 -32.86346 -31.48772 -28.75209 -27.43026 -24.59915 -23.95797 -22.74478 -21.41586 -19.40532 -18.51711 -18.24573 -17.27655 -16.75208 -16.20900 -15.69800 -15.07453 -14.49270 -14.39368 -14.13087 -13.85741 -13.53456 -13.29472 -13.14996 -13.00048 -12.69093 -12.45458 -12.13747 -11.88091 -11.52555 -11.16424 -10.44748 -10.30222 -9.84228 -9.09511 -8.80823 -6.43209 0.21734 0.79765 1.02391 1.36410 1.42681 1.56654 1.76350 2.17473 2.22003 2.74825 3.40817 3.72965 3.73865 3.88027 4.22004 4.39047 4.63732 4.71348 4.77612 4.83079 4.90753 5.03817 5.09078 5.16570 5.29518 5.41530 5.71944 5.85829 6.09533 6.32530 6.70351 6.72916 7.32939 7.71851 8.17129 Molecular weight = 230.08amu Principal moments of inertia in cm(-1) A = 0.054439 B = 0.006277 C = 0.005720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 514.212802 B = 4459.539536 C = 4894.065485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C -0.034 4.034 3 O 0.084 5.916 4 N -0.388 5.388 5 C 0.001 3.999 6 C -0.140 4.140 7 C 0.018 3.982 8 C -0.111 4.111 9 C -0.210 4.210 10 C 0.040 3.960 11 C -0.465 4.465 12 H 0.089 0.911 13 C 0.036 3.964 14 N -0.807 5.807 15 Si 0.989 3.011 16 H -0.262 1.262 17 H -0.256 1.256 18 H -0.264 1.264 19 C 0.018 3.982 20 N -0.462 5.462 21 H 0.090 0.910 22 H 0.097 0.903 23 H 0.089 0.911 24 H 0.213 0.787 25 H 0.133 0.867 26 H 0.121 0.879 27 H 0.297 0.703 28 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.657 2.757 1.608 3.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.098 4.098 3 O 0.023 5.977 4 N -0.095 5.095 5 C -0.178 4.178 6 C -0.145 4.145 7 C -0.115 4.115 8 C -0.131 4.131 9 C -0.235 4.235 10 C 0.035 3.965 11 C -0.493 4.493 12 H 0.108 0.892 13 C -0.182 4.182 14 N -0.431 5.431 15 Si 0.809 3.191 16 H -0.186 1.186 17 H -0.180 1.180 18 H -0.188 1.188 19 C -0.147 4.147 20 N -0.170 5.170 21 H 0.108 0.892 22 H 0.116 0.884 23 H 0.108 0.892 24 H 0.230 0.770 25 H 0.151 0.849 26 H 0.139 0.861 27 H 0.109 0.891 28 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 0.692 4.533 1.451 4.810 hybrid contribution 0.118 -2.202 -0.056 2.205 sum 0.810 2.332 1.395 2.835 Atomic orbital electron populations 1.20383 0.82075 1.04841 1.04390 1.25022 0.97058 0.84634 1.03126 1.84581 1.11339 1.33321 1.68500 1.73565 0.97672 1.17246 1.21054 1.25274 0.99944 0.89794 1.02798 1.19715 0.92641 0.93117 1.09032 1.18185 0.89288 0.89631 1.14413 1.21394 0.99344 0.93082 0.99244 1.21271 0.95745 0.95930 1.10561 1.18931 0.92604 0.95488 0.89499 1.19915 1.01315 0.93409 1.34696 0.89248 1.26913 0.96284 1.03438 0.91529 1.69803 1.13708 1.38407 1.21189 0.85066 0.77969 0.76075 0.79973 1.18614 1.17957 1.18829 1.22803 0.99676 0.86564 1.05706 1.67021 1.17906 1.21776 1.10339 0.89193 0.88399 0.89247 0.77010 0.84889 0.86087 0.89147 0.84169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.80 9.92 71.24 0.71 -1.09 15 2 C -0.03 -1.22 7.56 25.42 0.19 -1.03 15 3 O 0.08 2.92 11.16 73.45 0.82 3.74 15 4 N -0.39 -13.64 12.02 -57.92 -0.70 -14.33 15 5 C 0.00 0.04 11.62 86.05 1.00 1.04 15 6 C -0.14 -5.53 6.24 -19.92 -0.12 -5.65 15 7 C 0.02 0.82 6.76 41.93 0.28 1.10 15 8 C -0.11 -4.72 9.58 22.30 0.21 -4.50 15 9 C -0.21 -9.64 9.87 22.63 0.22 -9.42 15 10 C 0.04 2.01 5.58 -21.17 -0.12 1.89 15 11 C -0.46 -22.77 9.06 23.38 0.21 -22.56 15 12 H 0.09 4.13 7.90 -2.91 -0.02 4.11 15 13 C 0.04 1.66 5.15 85.26 0.44 2.10 15 14 N -0.81 -38.59 10.96 21.83 0.24 -38.35 15 15 Si 0.99 34.13 29.59 68.60 2.03 36.16 15 16 H -0.26 -8.72 7.11 99.48 0.71 -8.01 15 17 H -0.26 -8.68 7.11 99.48 0.71 -7.97 15 18 H -0.26 -8.71 7.11 99.48 0.71 -8.00 15 19 C 0.02 0.94 9.88 85.43 0.84 1.78 15 20 N -0.46 -22.40 8.07 -182.73 -1.47 -23.88 15 21 H 0.09 2.49 8.14 -2.39 -0.02 2.47 15 22 H 0.10 2.28 8.14 -2.39 -0.02 2.26 15 23 H 0.09 3.17 6.50 -2.39 -0.02 3.15 15 24 H 0.21 5.74 7.58 -2.91 -0.02 5.71 15 25 H 0.13 4.60 7.26 -2.91 -0.02 4.58 15 26 H 0.12 5.00 8.06 -2.91 -0.02 4.97 15 27 H 0.30 12.68 8.30 -92.71 -0.77 11.91 15 28 H 0.14 7.39 6.17 -2.91 -0.02 7.37 15 Total: -1.00 -56.42 252.40 5.98 -50.44 By element: Atomic # 1 Polarization: 21.37 SS G_CDS: 1.19 Total: 22.56 kcal Atomic # 6 Polarization: -40.22 SS G_CDS: 3.87 Total: -36.34 kcal Atomic # 7 Polarization: -74.63 SS G_CDS: -1.93 Total: -76.56 kcal Atomic # 8 Polarization: 2.92 SS G_CDS: 0.82 Total: 3.74 kcal Atomic # 14 Polarization: 34.13 SS G_CDS: 2.03 Total: 36.16 kcal Total: -56.42 5.98 -50.44 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242600259.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.495 kcal (2) G-P(sol) polarization free energy of solvation -56.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.438 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds