Wall clock time and date at job start Mon Mar 30 2020 17:31:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48504 * 109.47196 * 239.99713 * 3 2 1 5 5 H 1.48504 * 109.46887 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47679 * 119.99347 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.50700 * 109.46869 * 179.72213 * 9 7 2 11 11 C 1.38419 * 120.02618 * 89.99939 * 10 9 7 12 12 C 1.38243 * 120.49091 * 180.08999 * 11 10 9 13 13 C 1.38312 * 120.36095 * 359.92514 * 12 11 10 14 14 C 1.39575 * 119.26501 * 359.90759 * 13 12 11 15 15 C 1.37896 * 120.01900 * 269.72131 * 10 9 7 16 16 C 1.47588 * 120.11088 * 180.34351 * 14 13 12 17 17 O 1.21255 * 121.17408 * 168.62468 * 16 14 13 18 18 C 1.51462 * 117.64397 * 348.60323 * 16 14 13 19 19 C 1.53440 * 107.38337 * 42.49282 * 18 16 14 20 20 C 1.50416 * 119.12388 * 179.73025 * 13 12 11 21 21 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 22 22 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 23 23 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 24 24 H 1.08010 * 119.75455 * 0.07196 * 11 10 9 25 25 H 1.08002 * 119.82096 * 179.89252 * 12 11 10 26 26 H 1.08006 * 120.11890 * 0.05471 * 15 10 9 27 27 H 1.08999 * 109.87982 * 283.02193 * 18 16 14 28 28 H 1.09002 * 109.87598 * 161.96393 * 18 16 14 29 29 H 1.09007 * 109.48718 * 176.03355 * 19 18 16 30 30 H 1.09005 * 109.50008 * 55.99341 * 19 18 16 31 31 H 1.09001 * 109.12246 * 277.98747 * 20 13 12 32 32 H 1.09004 * 109.12422 * 37.13680 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1031 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2302 -3.6447 -0.0104 11 6 2.6802 -4.1764 1.1857 12 6 3.5799 -5.2260 1.1924 13 6 4.0408 -5.7592 0.0023 14 6 3.5860 -5.2271 -1.2052 15 6 2.6742 -4.1675 -1.2066 16 6 4.0598 -5.7868 -2.4861 17 8 3.5329 -5.4855 -3.5358 18 6 5.2276 -6.7503 -2.4429 19 6 4.9973 -7.6969 -1.2574 20 6 5.0241 -6.8968 0.0420 21 1 -0.4850 0.8401 -0.0004 22 1 0.6242 -2.5609 0.8844 23 1 0.6244 -2.5529 -0.8956 24 1 2.3260 -3.7682 2.1209 25 1 3.9252 -5.6315 2.1319 26 1 2.3220 -3.7569 -2.1415 27 1 6.1576 -6.1995 -2.3020 28 1 5.2712 -7.3215 -3.3702 29 1 5.7839 -8.4513 -1.2364 30 1 4.0284 -8.1848 -1.3643 31 1 6.0266 -6.4971 0.1945 32 1 4.7729 -7.5571 0.8721 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250056294.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:31:21 Heat of formation + Delta-G solvation = -39.571286 kcal Electronic energy + Delta-G solvation = -15202.129189 eV Core-core repulsion = 12705.289727 eV Total energy + Delta-G solvation = -2496.839462 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.105 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.09872 -37.89796 -35.67083 -33.18425 -31.25068 -30.53824 -28.50256 -26.63047 -23.55345 -22.94731 -21.60511 -20.90696 -18.43594 -16.38892 -16.06029 -15.76272 -15.42030 -14.54530 -14.52739 -14.23827 -13.62238 -13.55653 -13.14852 -12.89613 -12.40245 -12.05289 -11.54161 -11.50860 -11.19551 -11.12715 -10.96843 -10.73450 -10.62768 -10.43487 -9.72135 -9.50212 -9.23009 -8.47407 -8.43736 -7.83596 -6.06903 -4.11324 1.12683 1.91861 2.77451 3.30840 3.35035 3.38183 4.21158 4.27517 4.45514 4.71907 4.75788 4.91273 5.22076 5.27415 5.32416 5.47411 5.53945 5.61514 5.71549 5.76547 5.96310 6.01053 6.09125 6.14333 6.36937 6.58130 6.81297 7.00232 7.05215 7.42264 7.56033 7.73856 7.77493 7.88186 8.27087 8.93211 9.52738 11.02979 Molecular weight = 230.10amu Principal moments of inertia in cm(-1) A = 0.036124 B = 0.006339 C = 0.005950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.928365 B = 4416.060631 C = 4704.472308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.060 3.940 3 Si 0.896 3.104 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.276 1.276 7 C -0.515 4.515 8 H 0.056 0.944 9 C 0.048 3.952 10 C -0.049 4.049 11 C -0.088 4.088 12 C -0.137 4.137 13 C -0.065 4.065 14 C -0.175 4.175 15 C -0.062 4.062 16 C 0.400 3.600 17 O -0.460 6.460 18 C -0.164 4.164 19 C -0.112 4.112 20 C -0.080 4.080 21 H 0.263 0.737 22 H 0.031 0.969 23 H 0.031 0.969 24 H 0.123 0.877 25 H 0.118 0.882 26 H 0.129 0.871 27 H 0.099 0.901 28 H 0.089 0.911 29 H 0.075 0.925 30 H 0.068 0.932 31 H 0.078 0.922 32 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.841 -13.889 0.991 17.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.142 4.142 3 Si 0.724 3.276 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.553 4.553 8 H 0.075 0.925 9 C 0.011 3.989 10 C -0.049 4.049 11 C -0.106 4.106 12 C -0.155 4.155 13 C -0.066 4.066 14 C -0.176 4.176 15 C -0.081 4.081 16 C 0.278 3.722 17 O -0.336 6.336 18 C -0.201 4.201 19 C -0.149 4.149 20 C -0.117 4.117 21 H 0.073 0.927 22 H 0.049 0.951 23 H 0.049 0.951 24 H 0.141 0.859 25 H 0.136 0.864 26 H 0.146 0.854 27 H 0.117 0.883 28 H 0.107 0.893 29 H 0.094 0.906 30 H 0.087 0.913 31 H 0.096 0.904 32 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 9.405 -13.617 0.440 16.554 hybrid contribution 0.468 1.061 0.147 1.169 sum 9.872 -12.556 0.588 15.983 Atomic orbital electron populations 1.69946 1.06046 1.27026 1.50156 1.25008 0.94895 0.99281 0.95041 0.86584 0.79551 0.82741 0.78748 1.20132 1.21150 1.20138 1.21009 0.92990 0.89854 1.51492 0.92526 1.18368 0.92480 0.89416 0.98624 1.20719 0.96950 0.95668 0.91607 1.21324 0.95931 0.94704 0.98639 1.20962 0.99431 0.98236 0.96877 1.19760 0.97341 0.97072 0.92390 1.20144 1.02890 1.00886 0.93700 1.21363 0.93980 0.93618 0.99092 1.22760 0.82908 0.78769 0.87752 1.90513 1.54893 1.54474 1.33726 1.22299 0.98912 0.98342 1.00595 1.21478 1.02718 0.97475 0.93244 1.20385 0.98331 0.94964 0.98028 0.92704 0.95089 0.95121 0.85861 0.86377 0.85353 0.88258 0.89275 0.90646 0.91333 0.90416 0.90514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.44 13.29 55.43 0.74 -25.71 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 3 Si 0.90 21.62 29.54 -169.99 -5.02 16.60 16 4 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 6 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 7 C -0.52 -14.47 9.09 -34.44 -0.31 -14.78 16 8 H 0.06 1.57 7.74 -52.49 -0.41 1.17 16 9 C 0.05 1.23 5.11 -29.03 -0.15 1.09 16 10 C -0.05 -1.07 5.06 -104.68 -0.53 -1.60 16 11 C -0.09 -1.63 9.68 -39.51 -0.38 -2.02 16 12 C -0.14 -2.11 9.65 -39.55 -0.38 -2.49 16 13 C -0.07 -0.97 5.78 -104.23 -0.60 -1.57 16 14 C -0.18 -3.08 5.82 -105.00 -0.61 -3.69 16 15 C -0.06 -1.29 9.26 -39.12 -0.36 -1.66 16 16 C 0.40 6.49 6.89 -30.12 -0.21 6.28 16 17 O -0.46 -8.97 17.26 5.58 0.10 -8.88 16 18 C -0.16 -1.83 6.18 -27.28 -0.17 -2.00 16 19 C -0.11 -1.05 5.90 -26.70 -0.16 -1.21 16 20 C -0.08 -0.83 5.70 -28.21 -0.16 -0.99 16 21 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 22 H 0.03 0.82 8.09 -51.93 -0.42 0.40 16 23 H 0.03 0.84 8.08 -51.93 -0.42 0.42 16 24 H 0.12 2.18 8.06 -52.48 -0.42 1.76 16 25 H 0.12 1.44 8.06 -52.49 -0.42 1.01 16 26 H 0.13 2.80 7.72 -52.48 -0.40 2.40 16 27 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 28 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 32 H 0.08 0.67 8.11 -51.93 -0.42 0.25 16 LS Contribution 275.86 15.07 4.16 4.16 Total: -1.00 -31.15 275.86 -8.32 -39.47 By element: Atomic # 1 Polarization: 1.56 SS G_CDS: -4.17 Total: -2.61 kcal Atomic # 6 Polarization: -18.92 SS G_CDS: -4.12 Total: -23.04 kcal Atomic # 7 Polarization: -26.44 SS G_CDS: 0.74 Total: -25.71 kcal Atomic # 8 Polarization: -8.97 SS G_CDS: 0.10 Total: -8.88 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -31.15 -8.32 -39.47 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250056294.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.097 kcal (2) G-P(sol) polarization free energy of solvation -31.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.475 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds