Wall clock time and date at job start Mon Mar 30 2020 17:31:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48496 * 109.47341 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46983 * 299.99446 * 3 2 1 6 6 H 1.48503 * 109.47491 * 59.99259 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.50700 * 109.46869 * 179.72213 * 9 7 2 11 11 C 1.36141 * 120.14356 * 264.72037 * 10 9 7 12 12 C 1.39281 * 121.02083 * 179.62832 * 11 10 9 13 13 C 1.36359 * 120.95340 * 0.70158 * 12 11 10 14 14 F 1.35102 * 120.19938 * 179.65657 * 13 12 11 15 15 C 1.40712 * 119.60852 * 359.63589 * 13 12 11 16 16 C 1.40492 * 121.29358 * 180.02562 * 15 13 12 17 17 C 1.36101 * 119.65735 * 179.97438 * 16 15 13 18 18 C 1.39377 * 120.98857 * 0.02562 * 17 16 15 19 19 C 1.36088 * 120.98398 * 359.96867 * 18 17 16 20 20 C 1.40506 * 120.14679 * 84.99880 * 10 9 7 21 21 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 22 22 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 23 23 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 24 24 H 1.08004 * 119.49251 * 0.02562 * 11 10 9 25 25 H 1.07995 * 119.52582 * 180.33971 * 12 11 10 26 26 H 1.08000 * 120.17070 * 359.97438 * 16 15 13 27 27 H 1.07999 * 119.50503 * 180.02562 * 17 16 15 28 28 H 1.07992 * 119.50567 * 179.97438 * 18 17 16 29 29 H 1.08002 * 120.17138 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2302 -3.6447 -0.0104 11 6 2.5922 -4.2295 -1.1853 12 6 3.5016 -5.2841 -1.2118 13 6 4.0449 -5.7709 -0.0598 14 9 4.9203 -6.7990 -0.1027 15 6 3.6888 -5.1957 1.1740 16 6 4.2275 -5.6688 2.3823 17 6 3.8602 -5.0874 3.5568 18 6 2.9554 -4.0275 3.5807 19 6 2.4135 -3.5429 2.4303 20 6 2.7691 -4.1176 1.1980 21 1 -0.4850 0.8401 -0.0004 22 1 0.6242 -2.5609 0.8844 23 1 0.6244 -2.5529 -0.8956 24 1 2.1727 -3.8658 -2.1117 25 1 3.7759 -5.7266 -2.1580 26 1 4.9293 -6.4897 2.3791 27 1 4.2761 -5.4528 4.4841 28 1 2.6804 -3.5842 4.5263 29 1 1.7139 -2.7208 2.4641 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250056520.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:31:25 Heat of formation + Delta-G solvation = -31.147680 kcal Electronic energy + Delta-G solvation = -15045.564628 eV Core-core repulsion = 12425.630136 eV Total energy + Delta-G solvation = -2619.934492 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.080 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -49.87445 -41.20629 -37.54410 -35.52392 -33.66478 -31.36571 -30.97562 -28.58247 -25.27492 -24.16845 -24.09885 -21.53120 -18.85085 -18.54782 -18.41469 -17.55727 -16.67500 -16.61144 -15.83859 -15.54964 -15.07164 -14.86989 -14.62878 -14.11788 -13.96497 -13.43642 -13.39543 -13.15475 -12.62945 -12.55845 -12.21155 -12.13675 -11.74466 -11.48295 -11.40350 -10.61909 -10.53172 -9.62273 -8.65663 -8.18111 -6.32886 -0.41972 0.01555 1.04452 1.38959 1.40913 1.53139 2.05627 2.40836 3.10953 3.12612 3.22972 3.71625 3.86303 3.99378 4.15588 4.28487 4.39683 4.48572 4.62111 4.87390 4.93874 5.07043 5.26982 5.29195 5.32517 5.37235 5.49955 5.58185 5.73738 5.87799 5.99768 6.08059 6.17909 6.78338 7.35508 8.88628 Molecular weight = 230.08amu Principal moments of inertia in cm(-1) A = 0.028897 B = 0.008087 C = 0.007044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.715931 B = 3461.583067 C = 3974.152645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.012 3.988 3 Si 0.959 3.041 4 H -0.269 1.269 5 H -0.277 1.277 6 H -0.276 1.276 7 C -0.522 4.522 8 H 0.050 0.950 9 C 0.059 3.941 10 C -0.052 4.052 11 C -0.124 4.124 12 C -0.131 4.131 13 C 0.068 3.932 14 F -0.138 7.138 15 C -0.091 4.091 16 C -0.121 4.121 17 C -0.104 4.104 18 C -0.119 4.119 19 C -0.107 4.107 20 C -0.050 4.050 21 H 0.266 0.734 22 H 0.014 0.986 23 H 0.010 0.990 24 H 0.134 0.866 25 H 0.159 0.841 26 H 0.147 0.853 27 H 0.162 0.838 28 H 0.149 0.851 29 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.413 -9.945 4.211 13.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.187 4.187 3 Si 0.784 3.216 4 H -0.193 1.193 5 H -0.202 1.202 6 H -0.201 1.201 7 C -0.560 4.560 8 H 0.068 0.932 9 C 0.022 3.978 10 C -0.052 4.052 11 C -0.142 4.142 12 C -0.150 4.150 13 C 0.049 3.951 14 F -0.117 7.117 15 C -0.092 4.092 16 C -0.139 4.139 17 C -0.121 4.121 18 C -0.137 4.137 19 C -0.125 4.125 20 C -0.050 4.050 21 H 0.075 0.925 22 H 0.033 0.967 23 H 0.029 0.971 24 H 0.152 0.848 25 H 0.176 0.824 26 H 0.165 0.835 27 H 0.179 0.821 28 H 0.167 0.833 29 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 7.301 -9.879 4.209 12.985 hybrid contribution 0.096 0.950 -0.331 1.010 sum 7.397 -8.929 3.878 12.226 Atomic orbital electron populations 1.70067 1.07453 1.27873 1.51202 1.25792 0.95648 1.02642 0.94602 0.85480 0.78872 0.79227 0.77998 1.19331 1.20222 1.20109 1.21268 0.92791 0.90941 1.50989 0.93203 1.18111 0.92639 0.90366 0.96651 1.20459 0.96763 0.95195 0.92807 1.20645 0.98894 0.96445 0.98244 1.20972 0.97988 0.97836 0.98185 1.17276 0.94293 0.89449 0.94118 1.91433 1.66801 1.56177 1.97242 1.18242 0.99481 0.97465 0.94006 1.21151 1.00559 1.00999 0.91189 1.21204 0.96706 0.95320 0.98906 1.21232 0.97048 0.96999 0.98428 1.21296 0.99927 0.99163 0.92116 1.18025 0.97075 0.95523 0.94425 0.92515 0.96740 0.97134 0.84819 0.82372 0.83544 0.82064 0.83333 0.86295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.06 13.29 21.45 0.28 -53.77 15 2 C 0.01 0.66 5.46 84.66 0.46 1.12 15 3 Si 0.96 43.48 29.54 68.60 2.03 45.51 15 4 H -0.27 -11.95 7.11 99.48 0.71 -11.25 15 5 H -0.28 -12.20 7.11 99.48 0.71 -11.49 15 6 H -0.28 -12.10 7.11 99.48 0.71 -11.40 15 7 C -0.52 -28.96 9.09 25.60 0.23 -28.72 15 8 H 0.05 2.79 7.74 -2.91 -0.02 2.76 15 9 C 0.06 3.06 4.50 29.10 0.13 3.19 15 10 C -0.05 -2.30 5.08 -19.80 -0.10 -2.40 15 11 C -0.12 -4.76 9.57 22.03 0.21 -4.55 15 12 C -0.13 -4.28 9.92 22.08 0.22 -4.06 15 13 C 0.07 2.27 7.25 22.44 0.16 2.44 15 14 F -0.14 -4.20 16.65 44.97 0.75 -3.45 15 15 C -0.09 -3.24 5.74 -21.26 -0.12 -3.36 15 16 C -0.12 -3.48 9.61 22.32 0.21 -3.27 15 17 C -0.10 -2.63 9.95 22.05 0.22 -2.41 15 18 C -0.12 -3.51 9.95 22.04 0.22 -3.29 15 19 C -0.11 -4.11 9.28 22.33 0.21 -3.90 15 20 C -0.05 -2.05 5.74 -21.30 -0.12 -2.17 15 21 H 0.27 14.56 8.31 -92.70 -0.77 13.78 15 22 H 0.01 0.79 6.70 -2.38 -0.02 0.77 15 23 H 0.01 0.57 8.04 -2.39 -0.02 0.55 15 24 H 0.13 4.83 8.04 -2.91 -0.02 4.81 15 25 H 0.16 4.03 8.06 -2.91 -0.02 4.01 15 26 H 0.15 3.45 7.72 -2.91 -0.02 3.43 15 27 H 0.16 2.71 8.06 -2.91 -0.02 2.69 15 28 H 0.15 3.44 8.06 -2.91 -0.02 3.42 15 29 H 0.12 5.07 6.48 -2.91 -0.02 5.05 15 Total: -1.00 -62.12 259.14 6.15 -55.97 By element: Atomic # 1 Polarization: 5.98 SS G_CDS: 1.16 Total: 7.14 kcal Atomic # 6 Polarization: -53.33 SS G_CDS: 1.93 Total: -51.39 kcal Atomic # 7 Polarization: -54.06 SS G_CDS: 0.28 Total: -53.77 kcal Atomic # 9 Polarization: -4.20 SS G_CDS: 0.75 Total: -3.45 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 2.03 Total: 45.51 kcal Total: -62.12 6.15 -55.97 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250056520.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.824 kcal (2) G-P(sol) polarization free energy of solvation -62.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds