Wall clock time and date at job start Mon Mar 30 2020 17:32:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.46792 * 2 1 4 4 H 1.08994 * 109.47306 * 305.37835 * 3 2 1 5 5 C 1.50704 * 109.46708 * 185.38038 * 3 2 1 6 6 H 1.07995 * 120.00258 * 269.91918 * 5 3 2 7 7 C 1.37877 * 119.99403 * 89.92086 * 5 3 2 8 8 N 1.31520 * 119.99621 * 175.27857 * 7 5 3 9 9 Si 1.86799 * 120.00462 * 355.55535 * 7 5 3 10 10 H 1.48501 * 109.47217 * 85.64973 * 9 7 5 11 11 H 1.48506 * 109.47267 * 205.64996 * 9 7 5 12 12 H 1.48502 * 109.46766 * 325.64934 * 9 7 5 13 13 N 1.46903 * 109.47054 * 65.38484 * 3 2 1 14 14 C 1.46896 * 110.99650 * 255.16903 * 13 3 2 15 15 C 1.53001 * 109.46478 * 184.32797 * 14 13 3 16 16 H 1.08995 * 110.44078 * 307.53823 * 15 14 13 17 17 C 1.54272 * 110.48264 * 185.00078 * 15 14 13 18 18 C 1.53877 * 106.59991 * 217.71342 * 17 15 14 19 19 C 1.54274 * 106.59786 * 0.02562 * 18 17 15 20 20 H 1.08997 * 110.48781 * 142.28842 * 19 18 17 21 21 F 1.39900 * 110.48505 * 264.79804 * 19 18 17 22 22 C 1.54887 * 104.19290 * 23.60683 * 19 18 17 23 23 H 1.09006 * 109.47077 * 294.96633 * 1 2 3 24 24 H 1.08993 * 109.47653 * 54.97184 * 1 2 3 25 25 H 1.09003 * 109.46993 * 174.97710 * 1 2 3 26 26 H 1.09001 * 109.47065 * 240.00552 * 2 1 3 27 27 H 1.08998 * 109.47558 * 120.00379 * 2 1 3 28 28 H 0.97003 * 120.00087 * 179.97438 * 8 7 5 29 29 H 1.00902 * 110.99944 * 19.12429 * 13 3 2 30 30 H 1.08994 * 109.47294 * 304.33054 * 14 13 3 31 31 H 1.08998 * 109.46783 * 64.33433 * 14 13 3 32 32 H 1.09001 * 110.03153 * 336.99443 * 17 15 14 33 33 H 1.08994 * 110.03325 * 98.43180 * 17 15 14 34 34 H 1.09001 * 110.03293 * 119.28052 * 18 17 15 35 35 H 1.08994 * 110.03174 * 240.67003 * 18 17 15 36 36 H 1.09008 * 110.75619 * 203.74281 * 22 19 18 37 37 H 1.09003 * 110.75632 * 80.37812 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6001 1.9834 -0.8378 5 6 3.5410 1.4446 -0.1332 6 1 4.1616 1.4175 0.7502 7 6 4.1220 1.4812 -1.3831 8 7 5.4287 1.5768 -1.4982 9 14 3.0529 1.4029 -2.9128 10 1 2.5864 2.7690 -3.2613 11 1 3.8427 0.8468 -4.0408 12 1 1.8796 0.5306 -2.6525 13 7 1.6592 2.0965 1.2592 14 6 0.5427 3.0283 1.0517 15 6 0.2462 3.7676 2.3580 16 1 0.1077 3.0582 3.1739 17 6 -1.0019 4.6608 2.2016 18 6 -0.7231 5.9488 2.9960 19 6 0.6850 5.7936 3.6070 20 1 1.2160 6.7453 3.5882 21 9 0.5998 5.3077 4.9162 22 6 1.3864 4.7631 2.6878 23 1 -0.3633 0.4338 0.9317 24 1 -0.3634 0.5898 -0.8414 25 1 -0.3633 -1.0238 -0.0900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5139 0.8899 28 1 5.8375 1.6022 -2.3775 29 1 1.4338 1.4140 1.9673 30 1 0.8096 3.7489 0.2788 31 1 -0.3415 2.4722 0.7403 32 1 -1.1617 4.8981 1.1498 33 1 -1.8771 4.1538 2.6076 34 1 -0.7476 6.8111 2.3297 35 1 -1.4635 6.0672 3.7870 36 1 2.1960 4.2610 3.2176 37 1 1.7555 5.2424 1.7811 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255151994.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:32:35 Heat of formation + Delta-G solvation = -75.681473 kcal Electronic energy + Delta-G solvation = -16565.664579 eV Core-core repulsion = 13870.041794 eV Total energy + Delta-G solvation = -2695.622785 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 229.154 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -47.44859 -38.03168 -36.14759 -32.39010 -31.52091 -28.91454 -28.45019 -26.85767 -23.43618 -22.19811 -20.51740 -20.17880 -19.34131 -16.91868 -16.26905 -15.81184 -15.09254 -14.76943 -14.49693 -14.41696 -13.91225 -13.16071 -13.03882 -12.80170 -12.46327 -11.95275 -11.90197 -11.60698 -11.27374 -11.19104 -10.92190 -10.85332 -10.75438 -10.49367 -10.45135 -10.22805 -10.20051 -9.93476 -9.58572 -9.13392 -8.51302 -7.24564 -6.01579 -3.97105 3.27631 3.36997 3.37491 4.41154 4.44134 4.53909 4.72504 4.89138 5.05948 5.31151 5.38284 5.51970 5.52839 5.66358 5.69315 5.76356 5.82560 5.86503 5.95024 5.97480 6.04166 6.15041 6.22093 6.36628 6.47279 6.50523 6.54803 6.67283 6.76812 6.88418 7.16713 7.78573 7.99154 8.41858 8.74834 9.11009 9.62215 11.12306 Molecular weight = 229.15amu Principal moments of inertia in cm(-1) A = 0.030586 B = 0.006812 C = 0.006310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 915.226645 B = 4109.162111 C = 4436.589434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.148 4.148 3 C 0.189 3.811 4 H 0.026 0.974 5 C -0.487 4.487 6 H 0.077 0.923 7 C 0.067 3.933 8 N -0.902 5.902 9 Si 0.867 3.133 10 H -0.279 1.279 11 H -0.289 1.289 12 H -0.263 1.263 13 N -0.671 5.671 14 C 0.065 3.935 15 C -0.087 4.087 16 H 0.073 0.927 17 C -0.121 4.121 18 C -0.147 4.147 19 C 0.076 3.924 20 H 0.083 0.917 21 F -0.214 7.214 22 C -0.127 4.127 23 H 0.045 0.955 24 H 0.043 0.957 25 H 0.041 0.959 26 H 0.061 0.939 27 H 0.057 0.943 28 H 0.262 0.738 29 H 0.323 0.677 30 H 0.066 0.934 31 H 0.019 0.981 32 H 0.067 0.933 33 H 0.062 0.938 34 H 0.077 0.923 35 H 0.072 0.928 36 H 0.085 0.915 37 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.018 5.899 6.157 15.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.188 4.188 3 C 0.081 3.919 4 H 0.044 0.956 5 C -0.526 4.526 6 H 0.095 0.905 7 C -0.134 4.134 8 N -0.541 5.541 9 Si 0.695 3.305 10 H -0.205 1.205 11 H -0.216 1.216 12 H -0.187 1.187 13 N -0.301 5.301 14 C -0.065 4.065 15 C -0.106 4.106 16 H 0.091 0.909 17 C -0.159 4.159 18 C -0.185 4.185 19 C 0.040 3.960 20 H 0.101 0.899 21 F -0.195 7.195 22 C -0.165 4.165 23 H 0.064 0.936 24 H 0.062 0.938 25 H 0.060 0.940 26 H 0.079 0.921 27 H 0.075 0.925 28 H 0.072 0.928 29 H 0.140 0.860 30 H 0.084 0.916 31 H 0.037 0.963 32 H 0.086 0.914 33 H 0.081 0.919 34 H 0.096 0.904 35 H 0.091 0.909 36 H 0.104 0.896 37 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -12.384 6.393 5.986 15.168 hybrid contribution -1.255 -0.688 -1.060 1.781 sum -13.639 5.705 4.926 15.583 Atomic orbital electron populations 1.21951 0.98618 1.00172 1.00467 1.22495 0.92584 1.01771 1.01914 1.19608 0.96582 0.88338 0.87391 0.95627 1.20978 0.89049 1.48714 0.93877 0.90455 1.24972 0.94740 0.95066 0.98578 1.69907 1.09444 1.51032 1.23680 0.87059 0.81217 0.78674 0.83542 1.20513 1.21557 1.18741 1.60757 1.36701 1.21935 1.10700 1.22083 0.92709 0.95942 0.95730 1.21988 0.93537 0.96674 0.98419 0.90898 1.22185 0.98264 0.95156 1.00269 1.22739 0.96362 0.99173 1.00255 1.22486 0.97444 0.98036 0.78009 0.89900 1.92785 1.97393 1.90192 1.39177 1.23001 0.98256 0.95719 0.99504 0.93610 0.93761 0.93982 0.92072 0.92469 0.92819 0.85977 0.91554 0.96258 0.91381 0.91901 0.90431 0.90944 0.89606 0.89545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.61 8.90 37.16 0.33 -2.28 16 2 C -0.15 -3.04 4.87 -26.73 -0.13 -3.17 16 3 C 0.19 4.32 1.76 -68.86 -0.12 4.20 16 4 H 0.03 0.61 5.37 -51.93 -0.28 0.33 16 5 C -0.49 -13.60 9.19 -34.44 -0.32 -13.92 16 6 H 0.08 2.39 8.06 -52.49 -0.42 1.97 16 7 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 8 N -0.90 -27.66 13.96 55.43 0.77 -26.88 16 9 Si 0.87 21.30 26.23 -169.99 -4.46 16.84 16 10 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 11 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 12 H -0.26 -6.09 5.95 56.52 0.34 -5.75 16 13 N -0.67 -13.29 5.93 -107.95 -0.64 -13.93 16 14 C 0.07 1.08 4.43 -3.83 -0.02 1.07 16 15 C -0.09 -1.23 3.07 -88.95 -0.27 -1.50 16 16 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 17 C -0.12 -1.39 6.37 -25.61 -0.16 -1.56 16 18 C -0.15 -1.55 6.61 -25.61 -0.17 -1.72 16 19 C 0.08 0.93 4.65 -25.07 -0.12 0.82 16 20 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 21 F -0.21 -3.10 17.18 2.25 0.04 -3.06 16 22 C -0.13 -1.81 6.02 -24.73 -0.15 -1.96 16 23 H 0.04 0.71 6.60 -51.93 -0.34 0.36 16 24 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 25 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.06 1.34 6.48 -51.93 -0.34 1.01 16 27 H 0.06 1.14 8.04 -51.93 -0.42 0.73 16 28 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 29 H 0.32 5.97 7.86 -39.29 -0.31 5.66 16 30 H 0.07 1.18 7.89 -51.93 -0.41 0.77 16 31 H 0.02 0.31 6.42 -51.93 -0.33 -0.03 16 32 H 0.07 0.76 7.84 -51.93 -0.41 0.35 16 33 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.07 0.72 8.12 -51.93 -0.42 0.30 16 36 H 0.09 1.36 8.14 -51.92 -0.42 0.94 16 37 H 0.09 1.26 7.97 -51.93 -0.41 0.84 16 LS Contribution 290.76 15.07 4.38 4.38 Total: -1.00 -29.74 290.76 -7.38 -37.12 By element: Atomic # 1 Polarization: 9.96 SS G_CDS: -6.25 Total: 3.71 kcal Atomic # 6 Polarization: -16.96 SS G_CDS: -1.22 Total: -18.18 kcal Atomic # 7 Polarization: -40.95 SS G_CDS: 0.13 Total: -40.82 kcal Atomic # 9 Polarization: -3.10 SS G_CDS: 0.04 Total: -3.06 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -4.46 Total: 16.84 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -29.74 -7.38 -37.12 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255151994.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.566 kcal (2) G-P(sol) polarization free energy of solvation -29.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds