Wall clock time and date at job start Mon Mar 30 2020 17:36:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86803 * 119.99611 * 2 1 4 4 H 1.48494 * 109.47533 * 270.00168 * 3 2 1 5 5 H 1.48498 * 109.47096 * 30.00462 * 3 2 1 6 6 H 1.48500 * 109.46959 * 149.99918 * 3 2 1 7 7 C 1.38948 * 120.00492 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00263 * 179.97438 * 7 2 1 9 9 N 1.37097 * 119.99682 * 359.97438 * 7 2 1 10 10 C 1.34779 * 119.99944 * 179.97438 * 9 7 2 11 11 O 1.21297 * 119.99983 * 0.02562 * 10 9 7 12 12 C 1.50699 * 120.00037 * 180.02562 * 10 9 7 13 13 N 1.46506 * 109.46928 * 180.02562 * 12 10 9 14 14 C 1.34777 * 119.99873 * 180.02562 * 13 12 10 15 15 O 1.21284 * 119.99754 * 359.97438 * 14 13 12 16 16 C 1.50696 * 120.00137 * 179.97438 * 14 13 12 17 17 H 1.09004 * 115.54737 * 325.58426 * 16 14 13 18 18 C 1.53000 * 117.50090 * 111.24672 * 16 14 13 19 19 C 1.52999 * 117.49889 * 179.91011 * 16 14 13 20 20 H 1.08997 * 117.50050 * 359.97438 * 19 16 14 21 21 F 1.39906 * 117.49646 * 145.00000 * 19 16 14 22 22 H 0.97002 * 120.00294 * 359.97438 * 1 2 3 23 23 H 0.96996 * 120.00211 * 0.02562 * 9 7 2 24 24 H 1.09000 * 109.47247 * 60.00371 * 12 10 9 25 25 H 1.09001 * 109.47358 * 299.99798 * 12 10 9 26 26 H 0.96995 * 120.00050 * 359.72380 * 13 12 10 27 27 H 1.08993 * 117.50108 * 214.98141 * 18 16 14 28 28 H 1.09003 * 117.50062 * 0.02562 * 18 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 2.4955 2.0466 -1.4000 5 1 1.4454 2.6527 0.7001 6 1 3.5455 1.4403 0.7001 7 6 2.0089 -1.2033 -0.0005 8 1 3.0890 -1.2032 -0.0010 9 7 1.3235 -2.3906 -0.0005 10 6 1.9974 -3.5578 -0.0016 11 8 3.2104 -3.5577 -0.0021 12 6 1.2440 -4.8629 -0.0022 13 7 2.1961 -5.9764 -0.0027 14 6 1.7469 -7.2471 -0.0038 15 8 0.5545 -7.4687 -0.0039 16 6 2.7262 -8.3925 -0.0048 17 1 3.6483 -8.2220 -0.5606 18 6 2.8117 -9.2502 1.2593 19 6 2.1538 -9.8113 -0.0039 20 1 1.0689 -9.9164 -0.0021 21 9 2.8540 -10.7908 -0.7165 22 1 -0.4851 0.8400 0.0004 23 1 0.3535 -2.3906 -0.0005 24 1 0.6170 -4.9201 -0.8920 25 1 0.6177 -4.9213 0.8880 26 1 3.1497 -5.7991 -0.0066 27 1 3.7897 -9.6444 1.5348 28 1 2.1592 -8.9863 2.0916 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001337582884.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:36:18 Heat of formation + Delta-G solvation = -124.955307 kcal Electronic energy + Delta-G solvation = -15190.275853 eV Core-core repulsion = 12155.424294 eV Total energy + Delta-G solvation = -3034.851559 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.085 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -48.71178 -41.15910 -40.01669 -36.81416 -36.22976 -35.32701 -33.38920 -29.69111 -26.78356 -24.74033 -23.38279 -21.43666 -21.24524 -20.07749 -19.07869 -17.58586 -17.48585 -16.79069 -16.73691 -16.42478 -16.11750 -15.75369 -15.49306 -15.36096 -14.74145 -13.98092 -13.80579 -13.55729 -13.36786 -13.32460 -12.91437 -12.46812 -12.13076 -11.60972 -11.58108 -11.28053 -11.03864 -10.57892 -10.25996 -10.09987 -8.52176 -6.02497 1.31399 1.36348 1.42749 1.55064 1.86743 1.89438 2.29401 2.55739 3.03046 3.13518 3.15042 3.53304 3.57574 3.99834 4.06707 4.21543 4.40683 4.41653 4.67099 4.82514 5.06956 5.21334 5.37435 5.90380 6.41161 6.48655 7.02185 7.06622 7.42802 7.92899 8.64588 Molecular weight = 230.09amu Principal moments of inertia in cm(-1) A = 0.080204 B = 0.004298 C = 0.004160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 349.025738 B = 6513.712954 C = 6728.926389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.011 4.011 3 Si 0.997 3.003 4 H -0.271 1.271 5 H -0.272 1.272 6 H -0.270 1.270 7 C -0.338 4.338 8 H 0.086 0.914 9 N -0.559 5.559 10 C 0.432 3.568 11 O -0.624 6.624 12 C 0.120 3.880 13 N -0.701 5.701 14 C 0.545 3.455 15 O -0.578 6.578 16 C -0.211 4.211 17 H 0.151 0.849 18 C -0.137 4.137 19 C 0.044 3.956 20 H 0.146 0.854 21 F -0.188 7.188 22 H 0.280 0.720 23 H 0.399 0.601 24 H 0.095 0.905 25 H 0.098 0.902 26 H 0.416 0.584 27 H 0.140 0.860 28 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.982 -13.723 1.777 14.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.211 4.211 3 Si 0.820 3.180 4 H -0.196 1.196 5 H -0.196 1.196 6 H -0.194 1.194 7 C -0.467 4.467 8 H 0.104 0.896 9 N -0.195 5.195 10 C 0.219 3.781 11 O -0.512 6.512 12 C -0.008 4.008 13 N -0.354 5.354 14 C 0.333 3.667 15 O -0.458 6.458 16 C -0.232 4.232 17 H 0.169 0.831 18 C -0.174 4.174 19 C 0.008 3.992 20 H 0.164 0.836 21 F -0.168 7.168 22 H 0.090 0.910 23 H 0.233 0.767 24 H 0.113 0.887 25 H 0.116 0.884 26 H 0.254 0.746 27 H 0.158 0.842 28 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 2.806 -13.701 1.760 14.096 hybrid contribution 0.216 1.073 -0.259 1.125 sum 3.021 -12.628 1.502 13.071 Atomic orbital electron populations 1.69674 1.06996 1.29664 1.49220 1.26131 0.96545 1.02705 0.95763 0.84865 0.77926 0.76487 0.78701 1.19598 1.19641 1.19434 1.19735 0.92974 0.83546 1.50434 0.89559 1.41850 1.09619 1.04628 1.63360 1.20428 0.88128 0.85938 0.83612 1.90479 1.15176 1.87537 1.58056 1.20816 0.91679 0.83809 1.04451 1.45637 1.11578 1.04377 1.73768 1.19848 0.88524 0.83292 0.75041 1.90685 1.17893 1.85184 1.52053 1.22901 1.02130 0.90569 1.07611 0.83143 1.23847 1.05140 0.97530 0.90884 1.22164 0.96337 0.83583 0.97147 0.83635 1.92804 1.81194 1.63061 1.79742 0.91048 0.76665 0.88687 0.88439 0.74583 0.84241 0.85871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.09 13.05 21.66 0.28 -47.81 15 2 C -0.01 -0.55 5.50 84.93 0.47 -0.08 15 3 Si 1.00 41.26 29.55 68.60 2.03 43.29 15 4 H -0.27 -10.90 7.11 99.48 0.71 -10.19 15 5 H -0.27 -10.71 7.11 99.48 0.71 -10.00 15 6 H -0.27 -11.12 7.11 99.48 0.71 -10.42 15 7 C -0.34 -18.36 9.68 84.04 0.81 -17.55 15 8 H 0.09 4.94 7.16 -2.91 -0.02 4.92 15 9 N -0.56 -27.58 5.29 -306.98 -1.62 -29.20 15 10 C 0.43 19.42 7.85 87.66 0.69 20.11 15 11 O -0.62 -31.57 15.24 -3.08 -0.05 -31.62 15 12 C 0.12 4.19 6.15 85.63 0.53 4.72 15 13 N -0.70 -21.62 5.53 -466.78 -2.58 -24.20 15 14 C 0.55 15.51 7.61 87.66 0.67 16.18 15 15 O -0.58 -19.74 16.26 -3.04 -0.05 -19.79 15 16 C -0.21 -4.32 6.17 -11.54 -0.07 -4.39 15 17 H 0.15 2.62 8.14 -2.39 -0.02 2.60 15 18 C -0.14 -2.09 10.22 30.62 0.31 -1.78 15 19 C 0.04 0.85 7.41 30.62 0.23 1.08 15 20 H 0.15 2.86 7.67 -2.39 -0.02 2.84 15 21 F -0.19 -4.07 17.60 44.97 0.79 -3.28 15 22 H 0.28 13.76 8.31 -92.71 -0.77 12.99 15 23 H 0.40 18.88 7.90 -92.71 -0.73 18.15 15 24 H 0.10 3.17 8.14 -2.39 -0.02 3.15 15 25 H 0.10 3.20 8.14 -2.39 -0.02 3.18 15 26 H 0.42 12.62 7.44 -92.71 -0.69 11.93 15 27 H 0.14 1.52 8.14 -2.39 -0.02 1.50 15 28 H 0.12 1.79 8.14 -2.39 -0.02 1.77 15 Total: -1.00 -64.11 263.62 2.23 -61.88 By element: Atomic # 1 Polarization: 32.64 SS G_CDS: -0.21 Total: 32.43 kcal Atomic # 6 Polarization: 14.66 SS G_CDS: 3.63 Total: 18.29 kcal Atomic # 7 Polarization: -97.30 SS G_CDS: -3.92 Total: -101.22 kcal Atomic # 8 Polarization: -51.31 SS G_CDS: -0.10 Total: -51.41 kcal Atomic # 9 Polarization: -4.07 SS G_CDS: 0.79 Total: -3.28 kcal Atomic # 14 Polarization: 41.26 SS G_CDS: 2.03 Total: 43.29 kcal Total: -64.11 2.23 -61.88 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001337582884.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.072 kcal (2) G-P(sol) polarization free energy of solvation -64.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.883 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds