Wall clock time and date at job start Mon Mar 30 2020 17:31:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36930 * 120.00431 * 2 1 4 4 H 1.08004 * 120.00633 * 202.27280 * 3 2 1 5 5 C 1.38820 * 119.99825 * 22.26968 * 3 2 1 6 6 N 1.31612 * 120.00094 * 11.30587 * 5 3 2 7 7 Si 1.86796 * 119.99830 * 191.30336 * 5 3 2 8 8 H 1.48501 * 109.47498 * 60.00485 * 7 5 3 9 9 H 1.48504 * 109.47156 * 180.02562 * 7 5 3 10 10 H 1.48505 * 109.47323 * 300.00100 * 7 5 3 11 11 C 1.46498 * 119.99497 * 180.02562 * 2 1 3 12 12 C 1.50702 * 109.47216 * 269.99716 * 11 2 1 13 13 C 1.34232 * 126.56588 * 260.03096 * 12 11 2 14 14 N 1.36912 * 109.91048 * 179.97438 * 13 12 11 15 15 H 0.97003 * 124.98649 * 180.02562 * 14 13 12 16 16 C 1.37421 * 110.02469 * 0.02562 * 14 13 12 17 17 N 1.32655 * 133.18542 * 179.97438 * 16 14 13 18 18 C 1.31594 * 121.67047 * 180.02562 * 17 16 14 19 19 C 1.38671 * 121.57725 * 359.97438 * 18 17 16 20 20 C 1.38197 * 119.41420 * 0.02562 * 19 18 17 21 21 C 1.39692 * 118.03845 * 359.97438 * 20 19 18 22 22 H 1.08997 * 109.46966 * 274.33226 * 1 2 3 23 23 H 1.09004 * 109.46747 * 34.32214 * 1 2 3 24 24 H 1.08997 * 109.47077 * 154.32531 * 1 2 3 25 25 H 0.96996 * 120.00588 * 179.97438 * 6 5 3 26 26 H 1.09005 * 109.47423 * 150.00126 * 11 2 1 27 27 H 1.08997 * 109.47936 * 30.00225 * 11 2 1 28 28 H 1.07998 * 125.04493 * 359.94821 * 13 12 11 29 29 H 1.07997 * 119.20915 * 179.97438 * 18 17 16 30 30 H 1.08003 * 120.28721 * 179.97438 * 19 18 17 31 31 H 1.07994 * 120.97842 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1858 0.0000 4 1 3.1694 1.2207 -0.3545 5 6 1.5334 2.3432 0.4556 6 7 0.3827 2.2699 1.0901 7 14 2.3373 4.0046 0.1681 8 1 2.4947 4.2327 -1.2908 9 1 1.4849 5.0738 0.7475 10 1 3.6715 4.0284 0.8197 11 6 2.1974 -1.2688 -0.0006 12 6 2.4486 -1.7045 1.4201 13 6 3.5895 -1.5572 2.1118 14 7 3.4412 -2.0736 3.3711 15 1 4.1305 -2.0818 4.0536 16 6 2.1726 -2.5787 3.5262 17 7 1.5487 -3.1715 4.5356 18 6 0.3003 -3.5755 4.4346 19 6 -0.4271 -3.4014 3.2669 20 6 0.1694 -2.7899 2.1806 21 6 1.4951 -2.3691 2.3100 22 1 -0.3633 0.0776 1.0247 23 1 -0.3633 0.8488 -0.5795 24 1 -0.3633 -0.9262 -0.4452 25 1 -0.0479 3.0785 1.4088 26 1 3.1499 -1.1383 -0.5143 27 1 1.6084 -2.0282 -0.5147 28 1 4.4908 -1.0996 1.7313 29 1 -0.1688 -4.0542 5.2815 30 1 -1.4504 -3.7414 3.2068 31 1 -0.3734 -2.6419 1.2588 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001137403274.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:31:03 Heat of formation + Delta-G solvation = 97.487800 kcal Electronic energy + Delta-G solvation = -15814.171124 eV Core-core repulsion = 13290.141830 eV Total energy + Delta-G solvation = -2524.029294 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 231.107 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.93613 -37.33346 -35.50150 -32.59390 -31.23481 -29.55640 -28.90286 -25.88975 -25.38076 -23.18706 -22.02897 -21.38370 -18.72290 -17.71251 -16.74247 -16.06920 -15.49523 -14.79762 -14.46217 -14.18173 -13.47798 -13.18987 -12.92553 -12.74237 -12.47130 -11.77123 -11.72843 -11.40506 -10.91755 -10.85105 -10.62194 -10.23926 -10.00012 -9.93329 -9.70201 -8.95571 -8.51834 -7.93484 -7.36621 -6.70719 -5.68854 -3.13170 1.52259 1.85627 3.25122 3.34270 3.39738 3.45039 3.46030 4.38215 4.54115 4.95513 5.24207 5.31669 5.43893 5.53869 5.61500 5.81254 5.91897 6.02939 6.18677 6.33386 6.58300 6.64840 6.79045 6.84996 6.98120 7.20192 7.43105 7.54431 7.77526 7.82605 7.84842 8.43049 8.46943 9.26972 9.90434 10.39984 11.35804 Molecular weight = 231.11amu Principal moments of inertia in cm(-1) A = 0.031948 B = 0.008031 C = 0.007573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.222629 B = 3485.602693 C = 3696.234481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.166 3.834 2 N -0.591 5.591 3 C -0.252 4.252 4 H 0.069 0.931 5 C 0.002 3.998 6 N -0.905 5.905 7 Si 0.904 3.096 8 H -0.284 1.284 9 H -0.291 1.291 10 H -0.284 1.284 11 C 0.211 3.789 12 C -0.145 4.145 13 C 0.046 3.954 14 N -0.586 5.586 15 H 0.411 0.589 16 C 0.280 3.720 17 N -0.510 5.510 18 C 0.125 3.875 19 C -0.216 4.216 20 C -0.017 4.017 21 C -0.131 4.131 22 H 0.028 0.972 23 H 0.044 0.956 24 H -0.005 1.005 25 H 0.252 0.748 26 H 0.054 0.946 27 H 0.046 0.954 28 H 0.170 0.830 29 H 0.152 0.848 30 H 0.129 0.871 31 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.967 -10.246 2.209 10.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.312 5.312 3 C -0.381 4.381 4 H 0.087 0.913 5 C -0.197 4.197 6 N -0.550 5.550 7 Si 0.734 3.266 8 H -0.210 1.210 9 H -0.217 1.217 10 H -0.211 1.211 11 C 0.083 3.917 12 C -0.155 4.155 13 C -0.079 4.079 14 N -0.193 5.193 15 H 0.247 0.753 16 C 0.046 3.954 17 N -0.224 5.224 18 C -0.041 4.041 19 C -0.238 4.238 20 C -0.044 4.044 21 C -0.138 4.138 22 H 0.046 0.954 23 H 0.063 0.937 24 H 0.014 0.986 25 H 0.062 0.938 26 H 0.072 0.928 27 H 0.065 0.935 28 H 0.187 0.813 29 H 0.169 0.831 30 H 0.147 0.853 31 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 2.456 -10.147 3.039 10.874 hybrid contribution 0.201 1.304 -0.162 1.330 sum 2.658 -8.843 2.876 9.671 Atomic orbital electron populations 1.20800 0.82503 0.95318 0.99238 1.44081 1.01907 1.00356 1.84884 1.19172 0.98088 0.85224 1.35660 0.91348 1.25053 0.97737 0.98486 0.98402 1.70059 1.17695 1.27045 1.40193 0.86355 0.78464 0.83948 0.77846 1.21031 1.21720 1.21094 1.19339 0.96212 0.88022 0.88116 1.21737 0.91282 1.02078 1.00430 1.21592 1.00640 1.02392 0.83325 1.41461 1.10545 1.53195 1.14100 0.75252 1.18394 0.87007 0.98427 0.91586 1.66388 1.11208 1.14411 1.30363 1.22228 0.88341 0.96529 0.96957 1.21709 1.01352 1.05800 0.94922 1.20964 0.92363 0.92533 0.98511 1.19817 0.95051 1.03713 0.95259 0.95414 0.93714 0.98642 0.93777 0.92764 0.93533 0.81256 0.83115 0.85280 0.85249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 4.11 9.01 59.85 0.54 4.65 16 2 N -0.59 -14.77 2.91 -182.50 -0.53 -15.30 16 3 C -0.25 -6.84 9.67 -15.06 -0.15 -6.98 16 4 H 0.07 1.78 7.84 -52.48 -0.41 1.37 16 5 C 0.00 0.05 5.13 -17.43 -0.09 -0.04 16 6 N -0.91 -26.74 10.58 55.49 0.59 -26.16 16 7 Si 0.90 21.90 29.57 -169.99 -5.03 16.88 16 8 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 9 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 10 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 11 C 0.21 4.32 6.24 -5.19 -0.03 4.29 16 12 C -0.15 -2.91 5.90 -102.76 -0.61 -3.51 16 13 C 0.05 0.80 11.74 -16.70 -0.20 0.61 16 14 N -0.59 -9.86 6.05 -12.15 -0.07 -9.94 16 15 H 0.41 5.54 8.96 -40.82 -0.37 5.17 16 16 C 0.28 5.38 8.43 -155.69 -1.31 4.07 16 17 N -0.51 -9.31 10.39 -12.27 -0.13 -9.43 16 18 C 0.12 1.94 11.15 -17.49 -0.19 1.75 16 19 C -0.22 -3.30 10.10 -39.44 -0.40 -3.70 16 20 C -0.02 -0.31 10.22 -39.05 -0.40 -0.71 16 21 C -0.13 -2.61 6.37 -105.11 -0.67 -3.28 16 22 H 0.03 0.76 7.41 -51.93 -0.38 0.37 16 23 H 0.04 1.19 7.19 -51.93 -0.37 0.82 16 24 H 0.00 -0.11 7.84 -51.93 -0.41 -0.51 16 25 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 26 H 0.05 1.03 8.03 -51.93 -0.42 0.61 16 27 H 0.05 0.87 7.86 -51.93 -0.41 0.47 16 28 H 0.17 2.49 8.06 -52.49 -0.42 2.07 16 29 H 0.15 1.76 8.06 -52.49 -0.42 1.33 16 30 H 0.13 1.54 8.06 -52.48 -0.42 1.11 16 31 H 0.13 2.19 8.06 -52.49 -0.42 1.76 16 LS Contribution 270.45 15.07 4.08 4.08 Total: -1.00 -32.56 270.45 -8.19 -40.75 By element: Atomic # 1 Polarization: 5.59 SS G_CDS: -3.59 Total: 2.00 kcal Atomic # 6 Polarization: 0.63 SS G_CDS: -3.50 Total: -2.87 kcal Atomic # 7 Polarization: -60.68 SS G_CDS: -0.14 Total: -60.83 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.03 Total: 16.88 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -32.56 -8.19 -40.75 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001137403274.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.238 kcal (2) G-P(sol) polarization free energy of solvation -32.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.750 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds