Wall clock time and date at job start Mon Mar 30 2020 17:31:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36930 * 120.00431 * 2 1 4 4 H 1.08004 * 120.00633 * 202.27280 * 3 2 1 5 5 C 1.38820 * 119.99825 * 22.26968 * 3 2 1 6 6 N 1.31612 * 120.00094 * 11.30587 * 5 3 2 7 7 Si 1.86796 * 119.99830 * 191.30336 * 5 3 2 8 8 H 1.48501 * 109.47498 * 60.00485 * 7 5 3 9 9 H 1.48504 * 109.47156 * 180.02562 * 7 5 3 10 10 H 1.48505 * 109.47323 * 300.00100 * 7 5 3 11 11 C 1.46498 * 119.99497 * 180.02562 * 2 1 3 12 12 C 1.50702 * 109.47216 * 269.99716 * 11 2 1 13 13 C 1.34232 * 126.56588 * 260.03096 * 12 11 2 14 14 N 1.36912 * 109.91048 * 179.97438 * 13 12 11 15 15 H 0.97003 * 124.98649 * 180.02562 * 14 13 12 16 16 C 1.37421 * 110.02469 * 0.02562 * 14 13 12 17 17 N 1.32655 * 133.18542 * 179.97438 * 16 14 13 18 18 C 1.31594 * 121.67047 * 180.02562 * 17 16 14 19 19 C 1.38671 * 121.57725 * 359.97438 * 18 17 16 20 20 C 1.38197 * 119.41420 * 0.02562 * 19 18 17 21 21 C 1.39692 * 118.03845 * 359.97438 * 20 19 18 22 22 H 1.08997 * 109.46966 * 274.33226 * 1 2 3 23 23 H 1.09004 * 109.46747 * 34.32214 * 1 2 3 24 24 H 1.08997 * 109.47077 * 154.32531 * 1 2 3 25 25 H 0.96996 * 120.00588 * 179.97438 * 6 5 3 26 26 H 1.09005 * 109.47423 * 150.00126 * 11 2 1 27 27 H 1.08997 * 109.47936 * 30.00225 * 11 2 1 28 28 H 1.07998 * 125.04493 * 359.94821 * 13 12 11 29 29 H 1.07997 * 119.20915 * 179.97438 * 18 17 16 30 30 H 1.08003 * 120.28721 * 179.97438 * 19 18 17 31 31 H 1.07994 * 120.97842 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1858 0.0000 4 1 3.1694 1.2207 -0.3545 5 6 1.5334 2.3432 0.4556 6 7 0.3827 2.2699 1.0901 7 14 2.3373 4.0046 0.1681 8 1 2.4947 4.2327 -1.2908 9 1 1.4849 5.0738 0.7475 10 1 3.6715 4.0284 0.8197 11 6 2.1974 -1.2688 -0.0006 12 6 2.4486 -1.7045 1.4201 13 6 3.5895 -1.5572 2.1118 14 7 3.4412 -2.0736 3.3711 15 1 4.1305 -2.0818 4.0536 16 6 2.1726 -2.5787 3.5262 17 7 1.5487 -3.1715 4.5356 18 6 0.3003 -3.5755 4.4346 19 6 -0.4271 -3.4014 3.2669 20 6 0.1694 -2.7899 2.1806 21 6 1.4951 -2.3691 2.3100 22 1 -0.3633 0.0776 1.0247 23 1 -0.3633 0.8488 -0.5795 24 1 -0.3633 -0.9262 -0.4452 25 1 -0.0479 3.0785 1.4088 26 1 3.1499 -1.1383 -0.5143 27 1 1.6084 -2.0282 -0.5147 28 1 4.4908 -1.0996 1.7313 29 1 -0.1688 -4.0542 5.2815 30 1 -1.4504 -3.7414 3.2068 31 1 -0.3734 -2.6419 1.2588 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001137403274.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:31:03 Heat of formation + Delta-G solvation = 77.508555 kcal Electronic energy + Delta-G solvation = -15815.037489 eV Core-core repulsion = 13290.141830 eV Total energy + Delta-G solvation = -2524.895659 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 231.107 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.27909 -38.65985 -37.34671 -34.13737 -32.98571 -31.07421 -30.29326 -27.86930 -27.09200 -24.52087 -23.34986 -23.25903 -20.19354 -19.09371 -18.66853 -17.42997 -16.90623 -16.60394 -15.94017 -15.46144 -15.33450 -14.99879 -14.63980 -14.10873 -13.81000 -13.25362 -13.20672 -13.09096 -12.74271 -12.67282 -12.46579 -12.06457 -11.94287 -11.78284 -11.13794 -10.59593 -10.28650 -9.25285 -8.88710 -8.60433 -7.76713 -5.22968 0.19348 0.54896 1.47461 1.49634 1.55862 1.86994 2.03108 2.56046 3.05418 3.38598 3.73465 3.96337 3.97775 4.01024 4.20646 4.37608 4.62277 4.66112 4.84207 4.88264 5.02340 5.06482 5.23133 5.38623 5.47858 5.63659 5.69801 5.78886 5.82413 6.16561 6.38083 6.56903 7.17042 7.20891 7.93952 8.38799 9.26785 Molecular weight = 231.11amu Principal moments of inertia in cm(-1) A = 0.031948 B = 0.008031 C = 0.007573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.222629 B = 3485.602693 C = 3696.234481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.185 3.815 2 N -0.607 5.607 3 C -0.252 4.252 4 H 0.079 0.921 5 C -0.058 4.058 6 N -0.941 5.941 7 Si 0.966 3.034 8 H -0.276 1.276 9 H -0.301 1.301 10 H -0.276 1.276 11 C 0.213 3.787 12 C -0.183 4.183 13 C 0.059 3.941 14 N -0.577 5.577 15 H 0.426 0.574 16 C 0.253 3.747 17 N -0.525 5.525 18 C 0.123 3.877 19 C -0.204 4.204 20 C -0.040 4.040 21 C -0.161 4.161 22 H -0.005 1.005 23 H 0.016 0.984 24 H 0.027 0.973 25 H 0.243 0.757 26 H 0.068 0.932 27 H 0.059 0.941 28 H 0.198 0.802 29 H 0.193 0.807 30 H 0.167 0.833 31 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.662 -11.215 2.555 11.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 N -0.329 5.329 3 C -0.382 4.382 4 H 0.097 0.903 5 C -0.252 4.252 6 N -0.589 5.589 7 Si 0.795 3.205 8 H -0.202 1.202 9 H -0.228 1.228 10 H -0.202 1.202 11 C 0.087 3.913 12 C -0.192 4.192 13 C -0.067 4.067 14 N -0.185 5.185 15 H 0.265 0.735 16 C 0.020 3.980 17 N -0.240 5.240 18 C -0.043 4.043 19 C -0.226 4.226 20 C -0.067 4.067 21 C -0.169 4.169 22 H 0.014 0.986 23 H 0.034 0.966 24 H 0.046 0.954 25 H 0.052 0.948 26 H 0.087 0.913 27 H 0.078 0.922 28 H 0.215 0.785 29 H 0.210 0.790 30 H 0.184 0.816 31 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 3.199 -11.159 3.391 12.093 hybrid contribution -0.031 1.430 -0.240 1.451 sum 3.168 -9.728 3.151 10.705 Atomic orbital electron populations 1.20469 0.83031 0.95560 0.96988 1.44274 1.01965 1.01474 1.85153 1.19582 0.98346 0.86208 1.34086 0.90338 1.25794 0.98526 1.01809 0.99097 1.70258 1.19364 1.27048 1.42200 0.85358 0.77537 0.79741 0.77898 1.20193 1.22816 1.20176 1.19397 0.96520 0.86361 0.89022 1.21643 0.92726 1.04573 1.00273 1.22020 1.00951 1.00531 0.83186 1.41459 1.10413 1.52395 1.14237 0.73511 1.18689 0.87894 0.99533 0.91863 1.66494 1.12447 1.14853 1.30173 1.23023 0.87575 0.95347 0.98307 1.22146 1.02818 1.03824 0.93786 1.21224 0.92167 0.93550 0.99728 1.20135 0.96138 1.04730 0.95862 0.98645 0.96562 0.95434 0.94778 0.91338 0.92243 0.78479 0.79009 0.81585 0.85117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.27 9.01 127.77 1.15 10.43 16 2 N -0.61 -30.18 2.91 -731.30 -2.13 -32.30 16 3 C -0.25 -13.58 9.67 84.04 0.81 -12.76 16 4 H 0.08 3.98 7.84 -2.91 -0.02 3.96 16 5 C -0.06 -3.26 5.13 84.87 0.44 -2.82 16 6 N -0.94 -56.98 10.58 21.65 0.23 -56.75 16 7 Si 0.97 45.25 29.57 68.60 2.03 47.28 16 8 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16 9 H -0.30 -14.49 7.11 99.48 0.71 -13.78 16 10 H -0.28 -12.39 7.11 99.48 0.71 -11.69 16 11 C 0.21 8.51 6.24 85.63 0.53 9.05 16 12 C -0.18 -7.15 5.90 -18.66 -0.11 -7.26 16 13 C 0.06 2.00 11.74 82.99 0.97 2.97 16 14 N -0.58 -18.67 6.05 -192.34 -1.16 -19.83 16 15 H 0.43 10.80 8.96 -92.71 -0.83 9.97 16 16 C 0.25 9.50 8.43 133.93 1.13 10.63 16 17 N -0.53 -18.33 10.39 -192.73 -2.00 -20.33 16 18 C 0.12 3.49 11.15 84.83 0.95 4.44 16 19 C -0.20 -5.78 10.10 22.36 0.23 -5.55 16 20 C -0.04 -1.41 10.22 22.61 0.23 -1.18 16 21 C -0.16 -6.35 6.37 -20.18 -0.13 -6.48 16 22 H 0.00 -0.27 7.41 -2.39 -0.02 -0.29 16 23 H 0.02 0.86 7.19 -2.38 -0.02 0.85 16 24 H 0.03 1.16 7.84 -2.39 -0.02 1.14 16 25 H 0.24 14.48 8.31 -92.71 -0.77 13.71 16 26 H 0.07 2.49 8.03 -2.38 -0.02 2.47 16 27 H 0.06 2.17 7.86 -2.39 -0.02 2.15 16 28 H 0.20 5.30 8.06 -2.91 -0.02 5.28 16 29 H 0.19 3.70 8.06 -2.91 -0.02 3.67 16 30 H 0.17 3.35 8.06 -2.91 -0.02 3.32 16 31 H 0.13 4.37 8.06 -2.91 -0.02 4.34 16 Total: -1.00 -70.56 270.45 3.48 -67.08 By element: Atomic # 1 Polarization: 13.09 SS G_CDS: 0.31 Total: 13.40 kcal Atomic # 6 Polarization: -4.75 SS G_CDS: 6.20 Total: 1.45 kcal Atomic # 7 Polarization: -124.15 SS G_CDS: -5.06 Total: -129.21 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 2.03 Total: 47.28 kcal Total: -70.56 3.48 -67.08 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001137403274.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.591 kcal (2) G-P(sol) polarization free energy of solvation -70.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.083 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds