Wall clock time and date at job start Mon Mar 30 2020 17:33:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30835 * 1 3 3 Si 1.86799 * 120.00342 * 2 1 4 4 H 1.48498 * 109.47062 * 275.42022 * 3 2 1 5 5 H 1.48502 * 109.46746 * 35.41849 * 3 2 1 6 6 H 1.48495 * 109.47407 * 155.41581 * 3 2 1 7 7 C 1.39946 * 120.00028 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99886 * 341.73331 * 7 2 1 9 9 C 1.41007 * 119.99959 * 161.72634 * 7 2 1 10 10 C 1.40953 * 120.11069 * 150.10701 * 9 7 2 11 11 C 1.36215 * 119.87931 * 179.97438 * 10 9 7 12 12 C 1.39982 * 120.11887 * 359.97438 * 11 10 9 13 13 C 1.47918 * 119.88631 * 180.02562 * 12 11 10 14 14 C 1.36906 * 124.01957 * 180.02562 * 13 12 11 15 15 S 1.72097 * 104.11262 * 180.24699 * 14 13 12 16 16 N 1.56441 * 96.08294 * 359.68189 * 15 14 13 17 17 N 1.27473 * 109.64176 * 0.33199 * 16 15 14 18 18 C 1.39987 * 120.22903 * 0.29460 * 12 11 10 19 19 C 1.36216 * 120.11777 * 359.45126 * 18 12 11 20 20 H 0.96996 * 120.00390 * 359.97438 * 1 2 3 21 21 H 1.07997 * 120.06069 * 359.95587 * 10 9 7 22 22 H 1.07999 * 119.94027 * 179.97438 * 11 10 9 23 23 H 1.07995 * 127.94173 * 359.97438 * 14 13 12 24 24 H 1.07997 * 119.94031 * 179.72175 * 18 12 11 25 25 H 1.07997 * 120.06086 * 180.27968 * 19 18 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 2.3754 2.1125 -1.3938 5 1 1.5018 2.6168 0.8114 6 1 3.5925 1.4098 0.5824 7 6 2.0081 -1.2120 -0.0005 8 1 1.5089 -2.1238 0.2922 9 6 3.3648 -1.2426 -0.3835 10 6 4.2333 -2.2068 0.1669 11 6 5.5430 -2.2324 -0.2068 12 6 6.0266 -1.3038 -1.1359 13 6 7.4496 -1.3366 -1.5384 14 6 8.0114 -0.4706 -2.4377 15 16 9.6568 -0.9670 -2.5266 16 7 9.5330 -2.1369 -1.4954 17 7 8.3331 -2.2091 -1.0713 18 6 5.1696 -0.3406 -1.6812 19 6 3.8570 -0.3096 -1.3182 20 1 -0.4850 0.8400 0.0004 21 1 3.8611 -2.9237 0.8837 22 1 6.2094 -2.9704 0.2146 23 1 7.5312 0.3357 -2.9722 24 1 5.5487 0.3764 -2.3943 25 1 3.1957 0.4310 -1.7429 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000000106424.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:33:26 Heat of formation + Delta-G solvation = 80.349260 kcal Electronic energy + Delta-G solvation = -12987.927337 eV Core-core repulsion = 10672.355975 eV Total energy + Delta-G solvation = -2315.571362 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 232.037 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.35439 -37.85766 -34.07561 -32.32569 -30.17131 -29.62933 -26.62015 -25.27358 -21.85313 -21.62434 -20.02854 -18.19577 -17.59688 -15.98686 -15.34518 -15.24505 -14.58309 -13.93379 -13.70155 -12.92854 -12.73148 -12.36404 -12.13226 -11.80323 -11.51667 -11.02439 -10.95561 -10.50411 -10.16227 -9.86944 -9.79418 -9.56703 -9.48468 -9.22930 -7.97384 -7.50560 -7.22442 -4.69030 0.55100 1.53277 1.92410 2.03126 2.64738 2.89937 3.04557 3.14974 3.29250 3.80168 4.37649 4.52518 5.26742 5.35309 5.44408 5.85034 5.99922 6.11930 6.43351 6.65571 6.72636 6.94365 7.24548 7.43115 7.57843 7.67198 7.91522 8.09846 8.22375 8.43497 8.53795 9.77596 Molecular weight = 232.04amu Principal moments of inertia in cm(-1) A = 0.054617 B = 0.006513 C = 0.005998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 512.539188 B = 4298.077772 C = 4667.318326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.789 5.789 2 C 0.081 3.919 3 Si 0.916 3.084 4 H -0.267 1.267 5 H -0.288 1.288 6 H -0.241 1.241 7 C -0.423 4.423 8 H 0.096 0.904 9 C 0.102 3.898 10 C -0.215 4.215 11 C -0.035 4.035 12 C -0.183 4.183 13 C 0.125 3.875 14 C -0.328 4.328 15 S 0.369 5.631 16 N -0.291 5.291 17 N -0.243 5.243 18 C -0.037 4.037 19 C -0.244 4.244 20 H 0.291 0.709 21 H 0.106 0.894 22 H 0.106 0.894 23 H 0.189 0.811 24 H 0.097 0.903 25 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.009 3.303 -4.368 11.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.411 5.411 2 C -0.141 4.141 3 Si 0.742 3.258 4 H -0.193 1.193 5 H -0.215 1.215 6 H -0.164 1.164 7 C -0.449 4.449 8 H 0.114 0.886 9 C 0.098 3.902 10 C -0.235 4.235 11 C -0.054 4.054 12 C -0.188 4.188 13 C -0.014 4.014 14 C -0.484 4.484 15 S 0.504 5.496 16 N -0.270 5.270 17 N -0.113 5.113 18 C -0.057 4.057 19 C -0.263 4.263 20 H 0.101 0.899 21 H 0.124 0.876 22 H 0.125 0.875 23 H 0.206 0.794 24 H 0.115 0.885 25 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 11.454 2.489 -4.127 12.427 hybrid contribution -1.416 1.341 -0.089 1.952 sum 10.038 3.830 -4.216 11.542 Atomic orbital electron populations 1.69689 1.08311 1.31002 1.32068 1.26339 0.94820 1.02316 0.90647 0.86220 0.81445 0.79026 0.79137 1.19274 1.21506 1.16376 1.19683 0.93235 0.96308 1.35720 0.88566 1.17858 0.92860 0.90648 0.88837 1.20737 0.93016 1.04492 1.05226 1.20514 0.95292 0.95577 0.94066 1.17061 0.86846 1.05233 1.09669 1.21043 0.96423 0.90346 0.93632 1.27965 1.00302 1.10176 1.09956 1.81003 1.09113 1.22893 1.36596 1.78759 1.15907 1.18433 1.13863 1.71388 0.94745 1.22745 1.22435 1.20300 0.93237 0.95384 0.96785 1.20671 0.95454 1.05406 1.04805 0.89874 0.87619 0.87543 0.79375 0.88465 0.87737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.58 13.93 55.55 0.77 -18.81 15 2 C 0.08 1.97 5.40 -17.34 -0.09 1.88 15 3 Si 0.92 19.41 24.51 -169.99 -4.17 15.24 15 4 H -0.27 -5.43 6.70 56.52 0.38 -5.05 15 5 H -0.29 -5.88 7.11 56.52 0.40 -5.48 15 6 H -0.24 -5.28 6.87 56.52 0.39 -4.90 15 7 C -0.42 -10.70 9.55 -37.89 -0.36 -11.07 15 8 H 0.10 2.53 8.06 -52.49 -0.42 2.11 15 9 C 0.10 2.45 5.10 -106.80 -0.55 1.90 15 10 C -0.22 -4.87 9.73 -39.28 -0.38 -5.25 15 11 C -0.04 -0.76 9.58 -39.66 -0.38 -1.14 15 12 C -0.18 -3.84 5.90 -104.62 -0.62 -4.46 15 13 C 0.12 2.38 6.76 -84.03 -0.57 1.81 15 14 C -0.33 -5.00 10.76 30.25 0.33 -4.67 15 15 S 0.37 4.87 23.38 -107.50 -2.51 2.36 15 16 N -0.29 -5.04 12.51 60.35 0.75 -4.28 15 17 N -0.24 -4.75 11.15 32.51 0.36 -4.39 15 18 C -0.04 -0.77 9.44 -39.65 -0.37 -1.15 15 19 C -0.24 -5.53 7.10 -39.29 -0.28 -5.81 15 20 H 0.29 6.47 8.30 -40.82 -0.34 6.13 15 21 H 0.11 2.24 8.06 -52.49 -0.42 1.81 15 22 H 0.11 2.16 7.73 -52.49 -0.41 1.76 15 23 H 0.19 2.36 7.15 -52.49 -0.38 1.99 15 24 H 0.10 1.69 6.82 -52.49 -0.36 1.33 15 25 H 0.10 2.32 4.73 -52.49 -0.25 2.07 15 LS Contribution 236.33 15.07 3.56 3.56 Total: -1.00 -26.57 236.33 -5.91 -32.48 By element: Atomic # 1 Polarization: 3.19 SS G_CDS: -1.40 Total: 1.78 kcal Atomic # 6 Polarization: -24.67 SS G_CDS: -3.28 Total: -27.95 kcal Atomic # 7 Polarization: -29.37 SS G_CDS: 1.89 Total: -27.48 kcal Atomic # 14 Polarization: 19.41 SS G_CDS: -4.17 Total: 15.24 kcal Atomic # 16 Polarization: 4.87 SS G_CDS: -2.51 Total: 2.36 kcal Total LS contribution 3.56 Total: 3.56 kcal Total: -26.57 -5.91 -32.48 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000106424.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.830 kcal (2) G-P(sol) polarization free energy of solvation -26.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.480 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds