Wall clock time and date at job start Mon Mar 30 2020 17:32:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47239 * 2 1 4 4 C 1.52997 * 109.47507 * 240.00057 * 2 1 3 5 5 C 1.50701 * 109.47202 * 119.99764 * 2 1 3 6 6 O 1.21248 * 119.99832 * 358.15034 * 5 2 1 7 7 C 1.47217 * 120.00276 * 178.14907 * 5 2 1 8 8 C 1.40177 * 120.05339 * 2.91696 * 7 5 2 9 9 C 1.38258 * 120.33008 * 180.23254 * 8 7 5 10 10 C 1.37786 * 120.44165 * 359.50378 * 9 8 7 11 11 C 1.40775 * 120.10280 * 0.24511 * 10 9 8 12 12 C 1.41445 * 120.16568 * 179.97438 * 11 10 9 13 13 H 1.08002 * 120.00265 * 335.31995 * 12 11 10 14 14 C 1.39935 * 119.99527 * 155.32205 * 12 11 10 15 15 N 1.30824 * 120.00302 * 343.75114 * 14 12 11 16 16 Si 1.86806 * 119.99735 * 163.75283 * 14 12 11 17 17 H 1.48496 * 109.47290 * 89.99712 * 16 14 12 18 18 H 1.48500 * 109.46914 * 210.00023 * 16 14 12 19 19 H 1.48497 * 109.46984 * 329.99594 * 16 14 12 20 20 C 1.39282 * 120.05392 * 182.65218 * 7 5 2 21 21 H 1.08997 * 109.47205 * 300.00471 * 1 2 3 22 22 H 1.08997 * 109.47121 * 60.00063 * 1 2 3 23 23 H 1.08996 * 109.46842 * 179.97438 * 1 2 3 24 24 H 1.08994 * 109.47398 * 170.09405 * 3 2 1 25 25 H 1.08997 * 109.47338 * 290.09615 * 3 2 1 26 26 H 1.09003 * 109.46924 * 50.09543 * 3 2 1 27 27 H 1.09010 * 109.46872 * 308.45327 * 4 2 1 28 28 H 1.08999 * 109.47444 * 68.44821 * 4 2 1 29 29 H 1.08998 * 109.47472 * 188.45762 * 4 2 1 30 30 H 1.08006 * 119.83367 * 0.02562 * 8 7 5 31 31 H 1.08002 * 119.77382 * 179.77151 * 9 8 7 32 32 H 1.08006 * 119.94626 * 180.23253 * 10 9 8 33 33 H 0.97005 * 120.00213 * 179.97438 * 15 14 12 34 34 H 1.07999 * 120.22191 * 0.03972 * 20 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 2.0323 -0.7104 1.2305 6 8 1.2449 -1.1417 2.0454 7 6 3.4791 -0.8807 1.4431 8 6 4.3920 -0.3295 0.5333 9 6 5.7518 -0.4900 0.7249 10 6 6.2259 -1.1842 1.8166 11 6 5.3256 -1.7410 2.7446 12 6 5.8108 -2.4544 3.8655 13 1 6.7855 -2.9182 3.8299 14 6 5.0278 -2.5592 5.0205 15 7 4.0103 -1.7559 5.1962 16 14 5.4355 -3.8462 6.3116 17 1 6.3793 -3.2709 7.3033 18 1 4.1896 -4.2681 7.0007 19 1 6.0618 -5.0228 5.6571 20 6 3.9431 -1.5850 2.5515 21 1 -0.3633 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 3.1155 1.4476 0.1768 25 1 1.8283 1.9028 -0.9651 26 1 1.5396 2.0048 0.7884 27 1 1.5586 -1.6960 -1.3280 28 1 1.8053 -0.1277 -2.1328 29 1 3.1195 -0.8540 -1.1768 30 1 4.0313 0.2206 -0.3233 31 1 6.4471 -0.0647 0.0163 32 1 7.2899 -1.3016 1.9604 33 1 3.4673 -1.8288 5.9967 34 1 3.2445 -2.0088 3.2578 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000000399080.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:32:16 Heat of formation + Delta-G solvation = -31.032478 kcal Electronic energy + Delta-G solvation = -16179.239625 eV Core-core repulsion = 13655.458955 eV Total energy + Delta-G solvation = -2523.780670 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 232.120 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.53821 -36.98784 -35.34181 -33.66389 -30.28645 -29.43979 -27.01571 -26.98284 -25.22666 -23.90473 -20.96447 -20.49681 -18.24709 -16.95638 -15.75408 -15.23727 -14.95030 -14.35499 -14.33468 -13.54623 -13.16484 -13.00426 -12.79068 -12.50243 -11.96944 -11.82020 -11.75745 -11.57879 -11.42829 -11.12987 -11.07377 -10.86332 -10.64211 -10.49947 -10.25914 -9.92637 -9.61327 -9.22258 -8.58132 -7.62526 -7.50676 -6.79961 -4.42294 1.94302 2.79653 3.06319 3.09075 3.14276 3.54642 3.90498 4.58690 4.67262 5.10711 5.23464 5.44851 5.59560 5.80863 5.86278 5.98040 6.03289 6.04561 6.12697 6.15642 6.25091 6.38826 6.43190 6.55874 6.62123 6.78861 6.98332 7.05079 7.21453 7.37793 7.71664 7.79008 7.94781 8.15154 8.44663 8.49866 8.80065 8.83088 10.14174 Molecular weight = 232.12amu Principal moments of inertia in cm(-1) A = 0.033225 B = 0.007766 C = 0.006678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 842.546767 B = 3604.569059 C = 4192.109799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.109 4.109 3 C -0.148 4.148 4 C -0.148 4.148 5 C 0.406 3.594 6 O -0.468 6.468 7 C -0.157 4.157 8 C -0.214 4.214 9 C -0.105 4.105 10 C -0.208 4.208 11 C 0.094 3.906 12 C -0.460 4.460 13 H 0.080 0.920 14 C 0.072 3.928 15 N -0.788 5.788 16 Si 0.910 3.090 17 H -0.269 1.269 18 H -0.275 1.275 19 H -0.260 1.260 20 C -0.092 4.092 21 H 0.057 0.943 22 H 0.054 0.946 23 H 0.056 0.944 24 H 0.082 0.918 25 H 0.058 0.942 26 H 0.054 0.946 27 H 0.053 0.947 28 H 0.057 0.943 29 H 0.083 0.917 30 H 0.112 0.888 31 H 0.093 0.907 32 H 0.095 0.905 33 H 0.284 0.716 34 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.476 2.665 -7.467 8.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.110 4.110 3 C -0.205 4.205 4 C -0.205 4.205 5 C 0.285 3.715 6 O -0.344 6.344 7 C -0.158 4.158 8 C -0.233 4.233 9 C -0.123 4.123 10 C -0.228 4.228 11 C 0.091 3.909 12 C -0.490 4.490 13 H 0.098 0.902 14 C -0.146 4.146 15 N -0.413 5.413 16 Si 0.734 3.266 17 H -0.194 1.194 18 H -0.200 1.200 19 H -0.184 1.184 20 C -0.111 4.111 21 H 0.076 0.924 22 H 0.073 0.927 23 H 0.075 0.925 24 H 0.101 0.899 25 H 0.077 0.923 26 H 0.073 0.927 27 H 0.072 0.928 28 H 0.076 0.924 29 H 0.101 0.899 30 H 0.130 0.870 31 H 0.111 0.889 32 H 0.113 0.887 33 H 0.095 0.905 34 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -3.088 2.501 -6.853 7.922 hybrid contribution 0.203 -0.425 0.637 0.793 sum -2.885 2.076 -6.216 7.160 Atomic orbital electron populations 1.21700 0.93617 1.02100 1.01339 1.21010 0.96651 0.97202 0.96122 1.22095 1.03403 0.93424 1.01614 1.22104 1.03484 0.99746 0.95192 1.22588 0.89256 0.74947 0.84678 1.90430 1.58882 1.40942 1.44178 1.20013 0.92476 1.04747 0.98565 1.20896 0.92877 1.08413 1.01090 1.20512 0.94637 0.99792 0.97393 1.21143 0.97912 1.04943 0.98761 1.17618 0.91156 0.90034 0.92078 1.19585 1.03147 1.29390 0.96832 0.90173 1.25959 0.93961 0.95235 0.99468 1.69776 1.14302 1.30717 1.26499 0.86280 0.78921 0.81342 0.80050 1.19417 1.19978 1.18405 1.21855 0.96325 0.98079 0.94862 0.92396 0.92725 0.92512 0.89944 0.92311 0.92703 0.92784 0.92376 0.89861 0.86996 0.88920 0.88722 0.90501 0.84932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.94 7.74 37.16 0.29 -1.65 16 2 C -0.11 -1.78 0.75 -155.66 -0.12 -1.89 16 3 C -0.15 -2.16 8.16 37.16 0.30 -1.86 16 4 C -0.15 -2.12 8.15 37.16 0.30 -1.82 16 5 C 0.41 8.72 5.95 -30.66 -0.18 8.53 16 6 O -0.47 -11.40 15.97 5.58 0.09 -11.31 16 7 C -0.16 -3.66 5.68 -105.13 -0.60 -4.25 16 8 C -0.21 -4.40 6.90 -38.85 -0.27 -4.67 16 9 C -0.11 -2.22 10.00 -39.74 -0.40 -2.61 16 10 C -0.21 -4.92 9.78 -38.79 -0.38 -5.30 16 11 C 0.09 2.48 5.57 -106.88 -0.60 1.88 16 12 C -0.46 -12.13 9.06 -37.73 -0.34 -12.48 16 13 H 0.08 2.00 7.90 -52.49 -0.41 1.59 16 14 C 0.07 1.83 5.17 -17.35 -0.09 1.74 16 15 N -0.79 -20.94 10.87 55.55 0.60 -20.33 16 16 Si 0.91 18.83 29.59 -169.99 -5.03 13.80 16 17 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 18 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 19 H -0.26 -5.31 7.11 56.52 0.40 -4.91 16 20 C -0.09 -2.44 8.24 -38.36 -0.32 -2.76 16 21 H 0.06 0.90 8.08 -51.93 -0.42 0.48 16 22 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 23 H 0.06 0.87 8.12 -51.93 -0.42 0.44 16 24 H 0.08 1.29 4.87 -51.93 -0.25 1.03 16 25 H 0.06 0.69 8.05 -51.93 -0.42 0.27 16 26 H 0.05 0.80 8.11 -51.93 -0.42 0.38 16 27 H 0.05 0.76 8.13 -51.92 -0.42 0.34 16 28 H 0.06 0.68 8.06 -51.93 -0.42 0.26 16 29 H 0.08 1.27 4.84 -51.93 -0.25 1.02 16 30 H 0.11 1.94 3.85 -52.48 -0.20 1.74 16 31 H 0.09 1.65 8.06 -52.49 -0.42 1.23 16 32 H 0.09 2.09 8.06 -52.48 -0.42 1.67 16 33 H 0.28 6.93 8.30 -40.82 -0.34 6.59 16 34 H 0.13 3.81 5.69 -52.49 -0.30 3.51 16 LS Contribution 277.16 15.07 4.18 4.18 Total: -1.00 -28.28 277.16 -6.89 -35.18 By element: Atomic # 1 Polarization: 9.97 SS G_CDS: -4.34 Total: 5.63 kcal Atomic # 6 Polarization: -24.75 SS G_CDS: -2.39 Total: -27.14 kcal Atomic # 7 Polarization: -20.94 SS G_CDS: 0.60 Total: -20.33 kcal Atomic # 8 Polarization: -11.40 SS G_CDS: 0.09 Total: -11.31 kcal Atomic # 14 Polarization: 18.83 SS G_CDS: -5.03 Total: 13.80 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -28.28 -6.89 -35.18 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000399080.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.145 kcal (2) G-P(sol) polarization free energy of solvation -28.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds