Wall clock time and date at job start Mon Mar 30 2020 17:31:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09003 * 109.88116 * 2 1 4 4 C 1.54315 * 109.89088 * 121.20702 * 2 1 3 5 5 C 1.55147 * 103.01909 * 141.68567 * 4 2 1 6 6 C 1.54910 * 101.65294 * 324.34686 * 5 4 2 7 7 N 1.47446 * 109.88293 * 238.97823 * 2 1 3 8 8 C 1.38818 * 111.00310 * 3.84400 * 7 2 1 9 9 C 1.39801 * 119.58286 * 104.79162 * 8 7 2 10 10 C 1.38594 * 119.49217 * 180.02562 * 9 8 7 11 11 C 1.38385 * 118.68023 * 0.27390 * 10 9 8 12 12 C 1.40552 * 119.15139 * 359.48493 * 11 10 9 13 13 C 1.41311 * 119.79000 * 180.22972 * 12 11 10 14 14 H 1.08007 * 120.00058 * 5.99882 * 13 12 11 15 15 C 1.40027 * 120.00648 * 186.00708 * 13 12 11 16 16 N 1.30742 * 119.99517 * 352.76817 * 15 13 12 17 17 Si 1.86798 * 120.00177 * 172.77527 * 15 13 12 18 18 H 1.48493 * 109.47265 * 60.00005 * 17 15 13 19 19 H 1.48501 * 109.46607 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.47041 * 299.99436 * 17 15 13 21 21 N 1.31956 * 119.58899 * 284.81396 * 8 7 2 22 22 H 1.09000 * 109.47093 * 187.12678 * 1 2 3 23 23 H 1.09005 * 109.46350 * 307.12518 * 1 2 3 24 24 H 1.08997 * 109.47246 * 67.12289 * 1 2 3 25 25 H 1.09003 * 110.70445 * 260.06563 * 4 2 1 26 26 H 1.09000 * 110.70796 * 23.12987 * 4 2 1 27 27 H 1.09005 * 110.98661 * 82.43394 * 5 4 2 28 28 H 1.08994 * 110.98780 * 206.21505 * 5 4 2 29 29 H 1.08999 * 110.37116 * 278.24310 * 6 5 4 30 30 H 1.09001 * 110.36971 * 155.89858 * 6 5 4 31 31 H 1.07999 * 120.25079 * 359.97438 * 9 8 7 32 32 H 1.07997 * 120.66002 * 180.02562 * 10 9 8 33 33 H 1.08003 * 120.42510 * 179.72164 * 11 10 9 34 34 H 0.97005 * 120.00221 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9007 1.0251 0.0000 4 6 2.0551 -0.7519 1.2411 5 6 3.2892 -1.5146 0.6915 6 6 2.8188 -1.8822 -0.7379 7 7 2.0315 -0.7146 -1.1882 8 6 0.9848 -1.1079 -2.0108 9 6 0.7414 -0.4119 -3.1986 10 6 -0.3045 -0.8059 -4.0182 11 6 -1.0846 -1.8806 -3.6292 12 6 -0.7865 -2.5430 -2.4259 13 6 -1.5713 -3.6451 -2.0181 14 1 -2.3344 -4.0370 -2.6744 15 6 -1.3598 -4.2292 -0.7632 16 7 -0.3475 -3.8499 -0.0279 17 14 -2.5239 -5.5505 -0.1398 18 1 -2.5137 -6.7018 -1.0776 19 1 -2.0840 -6.0036 1.2043 20 1 -3.8989 -4.9968 -0.0505 21 7 0.2317 -2.1337 -1.6617 22 1 -0.3633 -1.0197 0.1275 23 1 -0.3632 0.6203 0.8195 24 1 -0.3633 0.3995 -0.9468 25 1 2.3516 -0.0496 2.0203 26 1 1.3045 -1.4475 1.6164 27 1 4.1658 -0.8675 0.6598 28 1 3.4886 -2.4101 1.2800 29 1 2.1938 -2.7749 -0.7139 30 1 3.6771 -2.0362 -1.3919 31 1 1.3631 0.4268 -3.4750 32 1 -0.5091 -0.2820 -4.9402 33 1 -1.9096 -2.2087 -4.2442 34 1 -0.2007 -4.2547 0.8413 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320364708.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:31:00 Heat of formation + Delta-G solvation = 47.761383 kcal Electronic energy + Delta-G solvation = -16880.316087 eV Core-core repulsion = 14392.244926 eV Total energy + Delta-G solvation = -2488.071161 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 232.127 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.52059 -37.04111 -33.63288 -31.60509 -30.55276 -30.32075 -28.20962 -25.53576 -24.68541 -21.90230 -21.25994 -20.41735 -18.96443 -17.35999 -15.90866 -15.38841 -14.81979 -14.47173 -14.09957 -13.50416 -13.28073 -12.97606 -12.39824 -12.27369 -11.64506 -11.42991 -11.21968 -11.06896 -11.00870 -10.80734 -10.68538 -10.55582 -10.37831 -10.10473 -10.06684 -9.97379 -9.30632 -8.20616 -7.92187 -7.51725 -7.26630 -6.42285 -4.51315 2.71191 2.98084 3.06015 3.08407 3.21675 3.92979 4.67135 4.77042 5.31766 5.36511 5.55055 5.82731 5.94800 6.07962 6.12969 6.17005 6.27711 6.29479 6.43533 6.53189 6.61250 6.66042 6.75599 6.80750 6.84782 7.07131 7.11886 7.15609 7.31785 7.60814 7.73582 7.77999 7.87535 8.14088 8.46381 8.69141 9.00991 10.05201 10.28577 Molecular weight = 232.13amu Principal moments of inertia in cm(-1) A = 0.022566 B = 0.011855 C = 0.008846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1240.523702 B = 2361.228266 C = 3164.336214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.088 3.912 3 H 0.069 0.931 4 C -0.130 4.130 5 C -0.124 4.124 6 C 0.042 3.958 7 N -0.480 5.480 8 C 0.312 3.688 9 C -0.286 4.286 10 C -0.058 4.058 11 C -0.282 4.282 12 C 0.266 3.734 13 C -0.436 4.436 14 H 0.081 0.919 15 C 0.074 3.926 16 N -0.719 5.719 17 Si 0.904 3.096 18 H -0.266 1.266 19 H -0.279 1.279 20 H -0.266 1.266 21 N -0.499 5.499 22 H 0.096 0.904 23 H 0.037 0.963 24 H 0.054 0.946 25 H 0.058 0.942 26 H 0.076 0.924 27 H 0.061 0.939 28 H 0.066 0.934 29 H 0.091 0.909 30 H 0.060 0.940 31 H 0.097 0.903 32 H 0.096 0.904 33 H 0.097 0.903 34 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.667 2.568 2.816 4.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.019 4.019 3 H 0.087 0.913 4 C -0.168 4.168 5 C -0.162 4.162 6 C -0.085 4.085 7 N -0.203 5.203 8 C 0.076 3.924 9 C -0.311 4.311 10 C -0.083 4.083 11 C -0.304 4.304 12 C 0.140 3.860 13 C -0.467 4.467 14 H 0.099 0.901 15 C -0.151 4.151 16 N -0.341 5.341 17 Si 0.728 3.272 18 H -0.191 1.191 19 H -0.204 1.204 20 H -0.191 1.191 21 N -0.215 5.215 22 H 0.115 0.885 23 H 0.056 0.944 24 H 0.073 0.927 25 H 0.077 0.923 26 H 0.094 0.906 27 H 0.079 0.921 28 H 0.084 0.916 29 H 0.110 0.890 30 H 0.078 0.922 31 H 0.115 0.885 32 H 0.114 0.886 33 H 0.115 0.885 34 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 3.245 2.400 3.500 5.342 hybrid contribution -1.202 -0.542 -0.130 1.325 sum 2.043 1.858 3.370 4.357 Atomic orbital electron populations 1.22533 0.95322 1.04653 1.00429 1.22152 0.94606 0.96881 0.88282 0.91268 1.22800 0.97880 0.99040 0.97096 1.22600 0.97293 0.99534 0.96756 1.23064 0.96951 0.94901 0.93595 1.61774 1.19500 1.23075 1.15994 1.19769 0.90423 0.91467 0.90707 1.20883 1.04637 1.06548 0.99014 1.20784 0.94542 0.95797 0.97156 1.21716 1.04633 1.02228 1.01843 1.18337 0.88991 0.91463 0.87245 1.19507 1.15635 1.11069 1.00538 0.90105 1.25987 0.95160 0.97070 0.96836 1.70088 1.22330 1.33091 1.08543 0.86452 0.81241 0.81119 0.78365 1.19072 1.20352 1.19063 1.68711 1.06550 1.14214 1.32006 0.88540 0.94369 0.92723 0.92300 0.90570 0.92062 0.91579 0.89036 0.92181 0.88466 0.88570 0.88494 0.91843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.60 7.86 37.16 0.29 -3.30 16 2 C 0.09 1.71 4.00 -66.72 -0.27 1.44 16 3 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 4 C -0.13 -2.24 6.47 -24.91 -0.16 -2.40 16 5 C -0.12 -2.06 7.08 -24.59 -0.17 -2.23 16 6 C 0.04 0.85 6.61 -2.29 -0.02 0.84 16 7 N -0.48 -10.32 5.14 -162.47 -0.84 -11.16 16 8 C 0.31 7.52 3.61 -155.33 -0.56 6.96 16 9 C -0.29 -6.69 9.65 -38.87 -0.37 -7.07 16 10 C -0.06 -1.32 10.15 -39.40 -0.40 -1.72 16 11 C -0.28 -6.91 9.83 -38.66 -0.38 -7.29 16 12 C 0.27 7.11 6.54 -85.00 -0.56 6.55 16 13 C -0.44 -11.38 9.13 -37.74 -0.34 -11.72 16 14 H 0.08 2.00 7.86 -52.48 -0.41 1.59 16 15 C 0.07 1.82 5.49 -17.34 -0.10 1.73 16 16 N -0.72 -17.99 11.49 55.55 0.64 -17.35 16 17 Si 0.90 18.31 29.57 -169.99 -5.03 13.28 16 18 H -0.27 -5.36 7.11 56.52 0.40 -4.95 16 19 H -0.28 -5.52 7.11 56.52 0.40 -5.12 16 20 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 21 N -0.50 -12.93 4.54 -10.33 -0.05 -12.97 16 22 H 0.10 2.34 6.41 -51.93 -0.33 2.01 16 23 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 24 H 0.05 1.23 6.74 -51.93 -0.35 0.88 16 25 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 26 H 0.08 1.45 7.75 -51.93 -0.40 1.05 16 27 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 28 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.09 2.16 6.83 -51.93 -0.35 1.80 16 30 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 31 H 0.10 2.12 8.06 -52.49 -0.42 1.70 16 32 H 0.10 1.88 8.06 -52.49 -0.42 1.45 16 33 H 0.10 2.21 8.06 -52.48 -0.42 1.79 16 34 H 0.27 6.25 8.29 -40.82 -0.34 5.91 16 LS Contribution 275.37 15.07 4.15 4.15 Total: -1.00 -26.84 275.37 -8.95 -35.78 By element: Atomic # 1 Polarization: 11.28 SS G_CDS: -4.79 Total: 6.49 kcal Atomic # 6 Polarization: -15.18 SS G_CDS: -3.04 Total: -18.22 kcal Atomic # 7 Polarization: -41.24 SS G_CDS: -0.24 Total: -41.48 kcal Atomic # 14 Polarization: 18.31 SS G_CDS: -5.03 Total: 13.28 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -26.84 -8.95 -35.78 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320364708.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.546 kcal (2) G-P(sol) polarization free energy of solvation -26.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.785 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds