Wall clock time and date at job start Mon Mar 30 2020 17:31:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09003 * 109.88116 * 2 1 4 4 C 1.54315 * 109.89088 * 121.20702 * 2 1 3 5 5 C 1.55147 * 103.01909 * 141.68567 * 4 2 1 6 6 C 1.54910 * 101.65294 * 324.34686 * 5 4 2 7 7 N 1.47446 * 109.88293 * 238.97823 * 2 1 3 8 8 C 1.38818 * 111.00310 * 3.84400 * 7 2 1 9 9 C 1.39801 * 119.58286 * 104.79162 * 8 7 2 10 10 C 1.38594 * 119.49217 * 180.02562 * 9 8 7 11 11 C 1.38385 * 118.68023 * 0.27390 * 10 9 8 12 12 C 1.40552 * 119.15139 * 359.48493 * 11 10 9 13 13 C 1.41311 * 119.79000 * 180.22972 * 12 11 10 14 14 H 1.08007 * 120.00058 * 5.99882 * 13 12 11 15 15 C 1.40027 * 120.00648 * 186.00708 * 13 12 11 16 16 N 1.30742 * 119.99517 * 352.76817 * 15 13 12 17 17 Si 1.86798 * 120.00177 * 172.77527 * 15 13 12 18 18 H 1.48493 * 109.47265 * 60.00005 * 17 15 13 19 19 H 1.48501 * 109.46607 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.47041 * 299.99436 * 17 15 13 21 21 N 1.31956 * 119.58899 * 284.81396 * 8 7 2 22 22 H 1.09000 * 109.47093 * 187.12678 * 1 2 3 23 23 H 1.09005 * 109.46350 * 307.12518 * 1 2 3 24 24 H 1.08997 * 109.47246 * 67.12289 * 1 2 3 25 25 H 1.09003 * 110.70445 * 260.06563 * 4 2 1 26 26 H 1.09000 * 110.70796 * 23.12987 * 4 2 1 27 27 H 1.09005 * 110.98661 * 82.43394 * 5 4 2 28 28 H 1.08994 * 110.98780 * 206.21505 * 5 4 2 29 29 H 1.08999 * 110.37116 * 278.24310 * 6 5 4 30 30 H 1.09001 * 110.36971 * 155.89858 * 6 5 4 31 31 H 1.07999 * 120.25079 * 359.97438 * 9 8 7 32 32 H 1.07997 * 120.66002 * 180.02562 * 10 9 8 33 33 H 1.08003 * 120.42510 * 179.72164 * 11 10 9 34 34 H 0.97005 * 120.00221 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9007 1.0251 0.0000 4 6 2.0551 -0.7519 1.2411 5 6 3.2892 -1.5146 0.6915 6 6 2.8188 -1.8822 -0.7379 7 7 2.0315 -0.7146 -1.1882 8 6 0.9848 -1.1079 -2.0108 9 6 0.7414 -0.4119 -3.1986 10 6 -0.3045 -0.8059 -4.0182 11 6 -1.0846 -1.8806 -3.6292 12 6 -0.7865 -2.5430 -2.4259 13 6 -1.5713 -3.6451 -2.0181 14 1 -2.3344 -4.0370 -2.6744 15 6 -1.3598 -4.2292 -0.7632 16 7 -0.3475 -3.8499 -0.0279 17 14 -2.5239 -5.5505 -0.1398 18 1 -2.5137 -6.7018 -1.0776 19 1 -2.0840 -6.0036 1.2043 20 1 -3.8989 -4.9968 -0.0505 21 7 0.2317 -2.1337 -1.6617 22 1 -0.3633 -1.0197 0.1275 23 1 -0.3632 0.6203 0.8195 24 1 -0.3633 0.3995 -0.9468 25 1 2.3516 -0.0496 2.0203 26 1 1.3045 -1.4475 1.6164 27 1 4.1658 -0.8675 0.6598 28 1 3.4886 -2.4101 1.2800 29 1 2.1938 -2.7749 -0.7139 30 1 3.6771 -2.0362 -1.3919 31 1 1.3631 0.4268 -3.4750 32 1 -0.5091 -0.2820 -4.9402 33 1 -1.9096 -2.2087 -4.2442 34 1 -0.2007 -4.2547 0.8413 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001320364708.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:31:00 Heat of formation + Delta-G solvation = 33.353109 kcal Electronic energy + Delta-G solvation = -16880.940877 eV Core-core repulsion = 14392.244926 eV Total energy + Delta-G solvation = -2488.695950 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 232.127 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.22712 -38.76866 -35.48252 -33.26010 -32.22189 -32.12697 -29.97325 -27.39398 -26.29826 -23.65414 -23.09417 -21.90434 -20.65305 -19.23804 -17.62499 -16.97587 -16.51228 -16.28797 -15.94180 -15.14248 -14.94438 -14.57087 -14.05716 -13.93881 -13.39385 -13.10920 -12.91228 -12.73812 -12.66583 -12.58768 -12.38006 -12.21292 -11.90207 -11.79068 -11.60931 -11.47186 -11.12472 -10.03774 -9.73512 -9.39220 -9.07179 -8.26137 -6.46305 0.86844 1.17551 1.39907 1.49461 1.53806 2.22539 2.83282 3.13430 3.79418 3.83304 4.01780 4.08949 4.38224 4.44944 4.56770 4.64212 4.67312 4.76723 4.85173 4.93783 4.97723 5.06167 5.09661 5.13249 5.23582 5.28559 5.30568 5.50210 5.61564 5.76424 5.90418 6.05669 6.11336 6.23296 6.60499 6.79719 7.11664 8.16609 8.45124 Molecular weight = 232.13amu Principal moments of inertia in cm(-1) A = 0.022566 B = 0.011855 C = 0.008846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1240.523702 B = 2361.228266 C = 3164.336214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.083 3.917 3 H 0.093 0.907 4 C -0.123 4.123 5 C -0.110 4.110 6 C 0.038 3.962 7 N -0.482 5.482 8 C 0.301 3.699 9 C -0.296 4.296 10 C -0.054 4.054 11 C -0.305 4.305 12 C 0.233 3.767 13 C -0.470 4.470 14 H 0.082 0.918 15 C 0.033 3.967 16 N -0.741 5.741 17 Si 0.978 3.022 18 H -0.262 1.262 19 H -0.269 1.269 20 H -0.264 1.264 21 N -0.511 5.511 22 H 0.059 0.941 23 H 0.062 0.938 24 H 0.030 0.970 25 H 0.094 0.906 26 H 0.051 0.949 27 H 0.088 0.912 28 H 0.077 0.923 29 H 0.052 0.948 30 H 0.066 0.934 31 H 0.114 0.886 32 H 0.131 0.869 33 H 0.106 0.894 34 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.374 3.188 3.790 5.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.024 4.024 3 H 0.111 0.889 4 C -0.161 4.161 5 C -0.148 4.148 6 C -0.089 4.089 7 N -0.205 5.205 8 C 0.066 3.934 9 C -0.320 4.320 10 C -0.079 4.079 11 C -0.327 4.327 12 C 0.106 3.894 13 C -0.502 4.502 14 H 0.100 0.900 15 C -0.190 4.190 16 N -0.362 5.362 17 Si 0.799 3.201 18 H -0.187 1.187 19 H -0.193 1.193 20 H -0.189 1.189 21 N -0.227 5.227 22 H 0.078 0.922 23 H 0.081 0.919 24 H 0.049 0.951 25 H 0.113 0.887 26 H 0.070 0.930 27 H 0.107 0.893 28 H 0.096 0.904 29 H 0.071 0.929 30 H 0.085 0.915 31 H 0.132 0.868 32 H 0.149 0.851 33 H 0.124 0.876 34 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 3.962 3.033 4.466 6.696 hybrid contribution -1.373 -0.658 -0.472 1.594 sum 2.589 2.375 3.994 5.319 Atomic orbital electron populations 1.22357 0.96809 1.02559 1.00030 1.22345 0.93360 0.98093 0.88572 0.88943 1.22741 0.97363 0.99069 0.96920 1.22572 0.97777 1.00460 0.94007 1.23052 0.96300 0.93177 0.96404 1.61888 1.18626 1.23236 1.16793 1.20161 0.90680 0.91114 0.91470 1.21203 1.04997 1.06914 0.98926 1.21137 0.93565 0.95031 0.98131 1.21897 1.05746 1.03268 1.01835 1.18809 0.89773 0.92389 0.88413 1.19817 1.16416 1.12040 1.01881 0.89987 1.26775 0.96689 0.99056 0.96440 1.70181 1.23419 1.33852 1.08787 0.85326 0.78754 0.78039 0.77959 1.18664 1.19332 1.18889 1.68733 1.06709 1.15030 1.32251 0.92190 0.91869 0.95097 0.88705 0.93007 0.89329 0.90447 0.92944 0.91534 0.86817 0.85109 0.87627 0.91380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.67 7.86 71.98 0.57 -6.10 16 2 C 0.08 3.09 4.00 45.26 0.18 3.27 16 3 H 0.09 3.04 8.14 -2.39 -0.02 3.02 16 4 C -0.12 -3.95 6.47 31.78 0.21 -3.74 16 5 C -0.11 -3.39 7.08 31.98 0.23 -3.16 16 6 C 0.04 1.52 6.61 86.77 0.57 2.09 16 7 N -0.48 -20.35 5.14 -667.94 -3.44 -23.79 16 8 C 0.30 14.67 3.61 133.42 0.48 15.15 16 9 C -0.30 -13.73 9.65 22.73 0.22 -13.51 16 10 C -0.05 -2.44 10.15 22.39 0.23 -2.21 16 11 C -0.31 -15.27 9.83 22.87 0.22 -15.05 16 12 C 0.23 12.85 6.54 40.17 0.26 13.12 16 13 C -0.47 -25.37 9.13 23.46 0.21 -25.16 16 14 H 0.08 4.21 7.86 -2.91 -0.02 4.19 16 15 C 0.03 1.65 5.49 85.29 0.47 2.12 16 16 N -0.74 -38.05 11.49 21.84 0.25 -37.79 16 17 Si 0.98 37.97 29.57 68.60 2.03 39.99 16 18 H -0.26 -9.94 7.11 99.48 0.71 -9.23 16 19 H -0.27 -9.91 7.11 99.48 0.71 -9.20 16 20 H -0.26 -10.11 7.11 99.48 0.71 -9.40 16 21 N -0.51 -27.27 4.54 -186.59 -0.85 -28.12 16 22 H 0.06 2.98 6.41 -2.39 -0.02 2.96 16 23 H 0.06 2.24 8.14 -2.38 -0.02 2.22 16 24 H 0.03 1.39 6.74 -2.39 -0.02 1.38 16 25 H 0.09 2.39 8.14 -2.39 -0.02 2.37 16 26 H 0.05 1.93 7.75 -2.39 -0.02 1.91 16 27 H 0.09 2.28 8.14 -2.38 -0.02 2.26 16 28 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 29 H 0.05 2.53 6.83 -2.39 -0.02 2.51 16 30 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 31 H 0.11 4.80 8.06 -2.91 -0.02 4.78 16 32 H 0.13 4.86 8.06 -2.91 -0.02 4.84 16 33 H 0.11 4.92 8.06 -2.91 -0.02 4.89 16 34 H 0.28 12.97 8.29 -92.70 -0.77 12.21 16 Total: -1.00 -59.45 275.37 2.92 -56.53 By element: Atomic # 1 Polarization: 25.30 SS G_CDS: 1.08 Total: 26.38 kcal Atomic # 6 Polarization: -37.05 SS G_CDS: 3.85 Total: -33.20 kcal Atomic # 7 Polarization: -85.67 SS G_CDS: -4.03 Total: -89.70 kcal Atomic # 14 Polarization: 37.97 SS G_CDS: 2.03 Total: 39.99 kcal Total: -59.45 2.92 -56.53 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320364708.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.880 kcal (2) G-P(sol) polarization free energy of solvation -59.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.527 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds