Wall clock time and date at job start Mon Mar 30 2020 17:32:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38238 * 119.99519 * 2 1 4 4 C 1.38234 * 119.99675 * 179.72408 * 3 2 1 5 5 C 1.38235 * 120.00220 * 0.28720 * 4 3 2 6 6 C 1.38237 * 119.99712 * 359.94731 * 5 4 3 7 7 C 1.50706 * 119.99744 * 180.02562 * 6 5 4 8 8 C 1.38228 * 120.00340 * 180.20275 * 2 1 3 9 9 C 1.50706 * 119.99981 * 0.02562 * 8 2 1 10 10 C 1.50697 * 109.47266 * 270.21872 * 9 8 2 11 11 O 1.21301 * 119.99948 * 359.97438 * 10 9 8 12 12 N 1.34777 * 120.00244 * 179.97438 * 10 9 8 13 13 C 1.37094 * 120.00329 * 179.97438 * 12 10 9 14 14 H 1.08005 * 120.00022 * 0.02562 * 13 12 10 15 15 C 1.38949 * 120.00263 * 179.97438 * 13 12 10 16 16 N 1.31408 * 119.99673 * 0.02562 * 15 13 12 17 17 Si 1.86793 * 120.00160 * 180.02562 * 15 13 12 18 18 H 1.48506 * 109.47339 * 60.00457 * 17 15 13 19 19 H 1.48494 * 109.47170 * 180.02562 * 17 15 13 20 20 H 1.48502 * 109.47304 * 300.00455 * 17 15 13 21 21 H 1.09000 * 109.47366 * 89.99623 * 1 2 3 22 22 H 1.09000 * 109.46813 * 209.99281 * 1 2 3 23 23 H 1.09001 * 109.47363 * 329.99785 * 1 2 3 24 24 H 1.08002 * 120.00519 * 0.02562 * 3 2 1 25 25 H 1.07999 * 120.00009 * 180.25939 * 4 3 2 26 26 H 1.07996 * 120.00471 * 179.97438 * 5 4 3 27 27 H 1.08998 * 109.46845 * 90.00731 * 7 6 5 28 28 H 1.08998 * 109.46732 * 210.00157 * 7 6 5 29 29 H 1.08993 * 109.47519 * 330.00649 * 7 6 5 30 30 H 1.08998 * 109.46741 * 30.21633 * 9 8 2 31 31 H 1.09001 * 109.46713 * 150.22038 * 9 8 2 32 32 H 0.96996 * 119.99735 * 0.02562 * 12 10 9 33 33 H 0.97003 * 120.00024 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1972 0.0000 4 6 3.5804 1.1973 0.0058 5 6 4.2717 0.0002 0.0055 6 6 3.5805 -1.1970 0.0006 7 6 4.3341 -2.5021 0.0010 8 6 2.1982 -1.1970 -0.0042 9 6 1.4447 -2.5022 -0.0094 10 6 1.1883 -2.9399 1.4096 11 8 1.5794 -2.2592 2.3343 12 7 0.5245 -4.0877 1.6513 13 6 0.2917 -4.4862 2.9422 14 1 0.6399 -3.8801 3.7656 15 6 -0.3932 -5.6692 3.1914 16 7 -0.8172 -6.4063 2.1896 17 14 -0.7110 -6.2117 4.9503 18 1 -1.5152 -5.1776 5.6497 19 1 -1.4539 -7.4975 4.9452 20 1 0.5840 -6.3917 5.6546 21 1 -0.3634 0.0001 -1.0276 22 1 -0.3633 -0.8901 0.5137 23 1 -0.3634 0.8900 0.5139 24 1 1.6581 2.1326 0.0004 25 1 4.1204 2.1326 0.0100 26 1 5.3516 0.0002 0.0096 27 1 4.5118 -2.8187 1.0287 28 1 3.7470 -3.2607 -0.5166 29 1 5.2885 -2.3708 -0.5089 30 1 0.4942 -2.3709 -0.5265 31 1 2.0358 -3.2608 -0.5225 32 1 0.2121 -4.6322 0.9119 33 1 -1.2950 -7.2324 2.3635 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336598708.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:32:45 Heat of formation + Delta-G solvation = -30.216831 kcal Electronic energy + Delta-G solvation = -16025.928478 eV Core-core repulsion = 13436.757266 eV Total energy + Delta-G solvation = -2589.171212 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 233.116 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.64770 -37.73827 -33.97894 -33.24041 -32.73516 -31.17408 -28.49528 -26.40534 -26.32928 -24.46370 -20.94796 -20.34752 -19.01505 -17.82722 -15.94487 -15.76811 -15.72248 -14.54396 -14.32015 -13.78776 -13.59811 -13.45127 -12.86480 -12.61927 -12.59309 -12.37339 -12.20798 -11.83534 -11.53594 -11.28072 -11.15545 -10.96058 -10.51627 -10.47474 -10.41082 -10.17995 -9.48301 -8.50285 -8.17746 -8.05932 -7.95030 -6.40176 -3.80985 1.74175 1.75394 3.20753 3.26295 3.30976 3.93573 4.03913 4.22228 5.03894 5.11457 5.17604 5.24916 5.27242 5.34847 5.56771 5.63370 5.78116 5.85601 5.90326 5.94346 6.02750 6.13836 6.20383 6.24932 6.38685 6.56145 6.60210 6.80726 6.90131 7.10619 7.40568 7.56329 8.07287 8.63053 9.19403 9.56334 10.08443 10.77464 Molecular weight = 233.12amu Principal moments of inertia in cm(-1) A = 0.038470 B = 0.006237 C = 0.005961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 727.666781 B = 4488.494244 C = 4695.936124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.069 4.069 3 C -0.130 4.130 4 C -0.124 4.124 5 C -0.130 4.130 6 C -0.070 4.070 7 C -0.116 4.116 8 C -0.044 4.044 9 C -0.104 4.104 10 C 0.447 3.553 11 O -0.585 6.585 12 N -0.564 5.564 13 C -0.300 4.300 14 H 0.102 0.898 15 C 0.023 3.977 16 N -0.902 5.902 17 Si 0.929 3.071 18 H -0.274 1.274 19 H -0.284 1.284 20 H -0.274 1.274 21 H 0.066 0.934 22 H 0.073 0.927 23 H 0.062 0.938 24 H 0.115 0.885 25 H 0.115 0.885 26 H 0.115 0.885 27 H 0.074 0.926 28 H 0.068 0.932 29 H 0.060 0.940 30 H 0.087 0.913 31 H 0.089 0.911 32 H 0.392 0.608 33 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.047 8.662 -7.582 12.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.069 4.069 3 C -0.148 4.148 4 C -0.142 4.142 5 C -0.148 4.148 6 C -0.070 4.070 7 C -0.173 4.173 8 C -0.044 4.044 9 C -0.144 4.144 10 C 0.233 3.767 11 O -0.469 6.469 12 N -0.201 5.201 13 C -0.429 4.429 14 H 0.119 0.881 15 C -0.179 4.179 16 N -0.544 5.544 17 Si 0.757 3.243 18 H -0.199 1.199 19 H -0.210 1.210 20 H -0.199 1.199 21 H 0.084 0.916 22 H 0.092 0.908 23 H 0.081 0.919 24 H 0.133 0.867 25 H 0.133 0.867 26 H 0.133 0.867 27 H 0.093 0.907 28 H 0.087 0.913 29 H 0.079 0.921 30 H 0.105 0.895 31 H 0.107 0.893 32 H 0.226 0.774 33 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 5.192 8.918 -6.947 12.440 hybrid contribution -0.379 -0.645 0.491 0.895 sum 4.813 8.274 -6.456 11.546 Atomic orbital electron populations 1.20820 0.91570 1.03316 1.01593 1.19676 0.95871 0.92537 0.98832 1.20870 0.94197 0.97057 1.02711 1.20946 0.94258 0.97510 1.01495 1.20860 0.99169 0.92067 1.02718 1.19676 0.93170 0.95272 0.98844 1.20843 0.99063 0.94549 1.02819 1.19099 0.92705 0.93712 0.98887 1.20690 1.00791 0.95253 0.97706 1.19713 0.84048 0.83466 0.89515 1.90546 1.55488 1.55405 1.45511 1.41886 1.49571 1.19790 1.08830 1.19656 1.33499 1.05368 0.84416 0.88057 1.25242 0.96958 0.96154 0.99522 1.69603 1.38717 1.14886 1.31145 0.85938 0.78626 0.77751 0.82028 1.19931 1.20958 1.19938 0.91573 0.90844 0.91852 0.86676 0.86730 0.86672 0.90746 0.91333 0.92149 0.89508 0.89312 0.77448 0.91843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.76 9.19 36.00 0.33 -1.43 16 2 C -0.07 -1.17 5.88 -104.63 -0.62 -1.79 16 3 C -0.13 -1.97 9.70 -39.58 -0.38 -2.35 16 4 C -0.12 -1.77 10.05 -39.58 -0.40 -2.17 16 5 C -0.13 -1.96 9.70 -39.58 -0.38 -2.35 16 6 C -0.07 -1.18 5.88 -104.62 -0.62 -1.79 16 7 C -0.12 -1.75 9.61 36.01 0.35 -1.41 16 8 C -0.04 -0.79 4.37 -104.62 -0.46 -1.25 16 9 C -0.10 -1.92 4.74 -29.03 -0.14 -2.05 16 10 C 0.45 10.65 7.36 -10.99 -0.08 10.57 16 11 O -0.59 -16.16 15.61 5.54 0.09 -16.07 16 12 N -0.56 -14.38 5.29 -10.96 -0.06 -14.44 16 13 C -0.30 -8.41 9.68 -14.94 -0.14 -8.56 16 14 H 0.10 2.99 7.16 -52.48 -0.38 2.61 16 15 C 0.02 0.61 5.50 -17.47 -0.10 0.52 16 16 N -0.90 -24.58 13.05 55.50 0.72 -23.85 16 17 Si 0.93 21.18 29.55 -169.99 -5.02 16.16 16 18 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 19 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 20 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 21 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 22 H 0.07 1.27 6.37 -51.93 -0.33 0.94 16 23 H 0.06 0.87 8.09 -51.93 -0.42 0.45 16 24 H 0.12 1.44 8.06 -52.49 -0.42 1.02 16 25 H 0.11 1.30 8.06 -52.49 -0.42 0.88 16 26 H 0.12 1.44 8.06 -52.49 -0.42 1.02 16 27 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 28 H 0.07 0.99 5.95 -51.93 -0.31 0.68 16 29 H 0.06 0.73 8.08 -51.93 -0.42 0.32 16 30 H 0.09 1.43 6.72 -51.93 -0.35 1.08 16 31 H 0.09 1.46 5.95 -51.93 -0.31 1.15 16 32 H 0.39 9.54 7.90 -40.82 -0.32 9.22 16 33 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 LS Contribution 281.44 15.07 4.24 4.24 Total: -1.00 -31.53 281.44 -6.75 -38.28 By element: Atomic # 1 Polarization: 13.82 SS G_CDS: -4.08 Total: 9.74 kcal Atomic # 6 Polarization: -11.42 SS G_CDS: -2.64 Total: -14.05 kcal Atomic # 7 Polarization: -38.96 SS G_CDS: 0.67 Total: -38.29 kcal Atomic # 8 Polarization: -16.16 SS G_CDS: 0.09 Total: -16.07 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -31.53 -6.75 -38.28 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336598708.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.059 kcal (2) G-P(sol) polarization free energy of solvation -31.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds