Wall clock time and date at job start Mon Mar 30 2020 17:32:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31608 * 1 3 3 Si 1.86806 * 119.99996 * 2 1 4 4 H 1.48497 * 109.47149 * 239.99989 * 3 2 1 5 5 H 1.48493 * 109.47198 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.46769 * 119.99950 * 3 2 1 7 7 C 1.38758 * 120.00169 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00472 * 180.02562 * 7 2 1 9 9 N 1.36817 * 119.99940 * 359.97438 * 7 2 1 10 10 C 1.39347 * 119.99899 * 179.97438 * 9 7 2 11 11 C 1.39149 * 120.18330 * 359.97438 * 10 9 7 12 12 C 1.38078 * 120.09546 * 180.02562 * 11 10 9 13 13 C 1.38426 * 120.35428 * 359.93986 * 12 11 10 14 14 C 1.38492 * 120.05682 * 0.03716 * 13 12 11 15 15 C 1.39218 * 119.92307 * 0.02862 * 14 13 12 16 16 N 1.40248 * 119.32714 * 179.91066 * 15 14 13 17 17 C 1.35100 * 118.97329 * 15.45758 * 16 15 14 18 18 O 1.21297 * 120.14693 * 181.69835 * 17 16 15 19 19 C 1.50754 * 119.69979 * 1.67794 * 17 16 15 20 20 O 1.36005 * 120.63222 * 180.02562 * 14 13 12 21 21 H 0.97004 * 120.00017 * 0.02562 * 1 2 3 22 22 H 0.96996 * 120.00102 * 0.02562 * 9 7 2 23 23 H 1.08004 * 119.95602 * 0.02562 * 11 10 9 24 24 H 1.08000 * 119.82541 * 179.97438 * 12 11 10 25 25 H 1.08005 * 119.97401 * 180.02562 * 13 12 11 26 26 H 0.97006 * 120.51102 * 195.43228 * 16 15 14 27 27 H 1.09001 * 109.44245 * 208.65514 * 19 17 16 28 28 H 1.08994 * 109.42097 * 88.73174 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6965 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1038 1.6964 1.2125 7 6 2.0099 -1.2017 -0.0005 8 1 3.0899 -1.2017 -0.0001 9 7 1.3258 -2.3865 -0.0005 10 6 2.0226 -3.5933 -0.0016 11 6 3.4141 -3.5977 -0.0032 12 6 4.1027 -4.7945 -0.0048 13 6 3.4162 -5.9965 -0.0036 14 6 2.0313 -6.0044 -0.0015 15 6 1.3300 -4.8018 -0.0013 16 7 -0.0723 -4.8243 -0.0010 17 6 -0.7083 -5.9739 0.3139 18 8 -1.9199 -6.0258 0.2908 19 6 0.0948 -7.1919 0.6938 20 8 1.3450 -7.1786 0.0003 21 1 -0.4850 0.8401 -0.0004 22 1 0.3559 -2.3866 -0.0005 23 1 3.9564 -2.6636 -0.0032 24 1 5.1827 -4.7928 -0.0065 25 1 3.9610 -6.9291 -0.0044 26 1 -0.5777 -4.0267 -0.2233 27 1 -0.4601 -8.0907 0.4247 28 1 0.2763 -7.1856 1.7685 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163187708.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:32:18 Heat of formation + Delta-G solvation = -39.036288 kcal Electronic energy + Delta-G solvation = -16012.148205 eV Core-core repulsion = 13221.335547 eV Total energy + Delta-G solvation = -2790.812658 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 234.079 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.76722 -38.28804 -37.44660 -34.88249 -34.37213 -31.93490 -29.45122 -28.00516 -27.08799 -24.94762 -22.93172 -21.28183 -19.38070 -18.44921 -18.17666 -17.00856 -16.30214 -15.81478 -15.15452 -14.69159 -14.55447 -14.29604 -13.88873 -13.76483 -13.16695 -12.83668 -12.21903 -11.85840 -11.71777 -11.40579 -11.05083 -10.83109 -10.53899 -10.35478 -10.19472 -10.04375 -9.56324 -8.86151 -7.39014 -6.82413 -6.75523 -3.93997 1.83633 2.27356 2.83630 3.06563 3.07065 3.08693 3.31505 3.81889 3.90259 4.43366 4.55498 4.90885 4.99045 5.22431 5.35945 5.65291 5.75496 6.06293 6.17557 6.51486 6.70247 6.84154 7.06476 7.16285 7.27602 7.35257 7.48605 7.58778 8.00199 8.30419 8.53231 9.06583 9.24560 10.40483 Molecular weight = 234.08amu Principal moments of inertia in cm(-1) A = 0.030632 B = 0.007947 C = 0.006357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 913.858191 B = 3522.551818 C = 4403.804864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.022 3.978 3 Si 0.937 3.063 4 H -0.270 1.270 5 H -0.281 1.281 6 H -0.270 1.270 7 C -0.304 4.304 8 H 0.107 0.893 9 N -0.551 5.551 10 C 0.213 3.787 11 C -0.217 4.217 12 C -0.048 4.048 13 C -0.237 4.237 14 C 0.137 3.863 15 C -0.055 4.055 16 N -0.639 5.639 17 C 0.482 3.518 18 O -0.544 6.544 19 C 0.056 3.944 20 O -0.312 6.312 21 H 0.279 0.721 22 H 0.396 0.604 23 H 0.124 0.876 24 H 0.115 0.885 25 H 0.116 0.884 26 H 0.408 0.592 27 H 0.134 0.866 28 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.670 -7.006 1.135 8.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.182 4.182 3 Si 0.763 3.237 4 H -0.195 1.195 5 H -0.206 1.206 6 H -0.196 1.196 7 C -0.434 4.434 8 H 0.125 0.875 9 N -0.153 5.153 10 C 0.089 3.911 11 C -0.242 4.242 12 C -0.068 4.068 13 C -0.260 4.260 14 C 0.091 3.909 15 C -0.155 4.155 16 N -0.286 5.286 17 C 0.269 3.731 18 O -0.423 6.423 19 C -0.022 4.022 20 O -0.226 6.226 21 H 0.089 0.911 22 H 0.231 0.769 23 H 0.142 0.858 24 H 0.133 0.867 25 H 0.134 0.866 26 H 0.247 0.753 27 H 0.151 0.849 28 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 3.985 -6.854 1.083 8.001 hybrid contribution -0.489 1.455 0.001 1.535 sum 3.496 -5.399 1.084 6.522 Atomic orbital electron populations 1.69665 1.06112 1.29162 1.47499 1.25363 0.95796 1.00191 0.96891 0.85809 0.78823 0.79879 0.79237 1.19537 1.20643 1.19559 1.19712 0.93229 0.82291 1.48124 0.87523 1.40905 1.07947 1.02052 1.64381 1.17237 0.91717 0.84004 0.98097 1.20345 0.91411 0.98212 1.14206 1.20482 0.98421 0.91240 0.96635 1.19709 0.89813 0.98181 1.18315 1.18174 0.91097 0.81526 1.00142 1.17104 0.81310 0.93264 1.23792 1.43347 1.05717 1.13370 1.66131 1.21378 0.88510 0.85508 0.77697 1.90742 1.13728 1.84474 1.53329 1.22969 0.83473 0.97268 0.98508 1.86138 1.32278 1.32084 1.72104 0.91114 0.76888 0.85778 0.86680 0.86609 0.75349 0.84866 0.89198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -22.86 13.05 55.49 0.72 -22.14 15 2 C 0.02 0.53 5.50 -17.46 -0.10 0.44 15 3 Si 0.94 18.90 29.55 -169.99 -5.02 13.88 15 4 H -0.27 -5.36 7.11 56.52 0.40 -4.96 15 5 H -0.28 -5.71 7.11 56.52 0.40 -5.31 15 6 H -0.27 -5.36 7.11 56.52 0.40 -4.96 15 7 C -0.30 -7.35 9.56 -15.14 -0.14 -7.50 15 8 H 0.11 2.43 5.69 -52.49 -0.30 2.13 15 9 N -0.55 -12.83 5.42 -9.54 -0.05 -12.89 15 10 C 0.21 4.54 6.63 -83.71 -0.56 3.99 15 11 C -0.22 -4.21 9.30 -39.30 -0.37 -4.58 15 12 C -0.05 -0.80 10.03 -39.57 -0.40 -1.20 15 13 C -0.24 -4.05 10.00 -39.42 -0.39 -4.44 15 14 C 0.14 2.55 6.44 -39.12 -0.25 2.30 15 15 C -0.05 -1.10 6.57 -83.25 -0.55 -1.64 15 16 N -0.64 -12.45 5.39 -9.51 -0.05 -12.50 15 17 C 0.48 8.92 7.94 -10.81 -0.09 8.84 15 18 O -0.54 -11.34 17.95 5.54 0.10 -11.24 15 19 C 0.06 0.83 7.17 36.03 0.26 1.09 15 20 O -0.31 -5.28 10.45 -19.76 -0.21 -5.49 15 21 H 0.28 6.83 8.31 -40.82 -0.34 6.49 15 22 H 0.40 9.43 6.24 -40.82 -0.25 9.17 15 23 H 0.12 2.37 5.97 -52.48 -0.31 2.05 15 24 H 0.12 1.56 8.06 -52.49 -0.42 1.14 15 25 H 0.12 1.72 8.06 -52.48 -0.42 1.30 15 26 H 0.41 8.06 7.28 -40.82 -0.30 7.77 15 27 H 0.13 1.57 8.14 -51.93 -0.42 1.15 15 28 H 0.09 1.15 8.14 -51.93 -0.42 0.73 15 LS Contribution 248.16 15.07 3.74 3.74 Total: -1.00 -27.32 248.16 -5.34 -32.66 By element: Atomic # 1 Polarization: 18.68 SS G_CDS: -1.99 Total: 16.69 kcal Atomic # 6 Polarization: -0.14 SS G_CDS: -2.58 Total: -2.71 kcal Atomic # 7 Polarization: -48.15 SS G_CDS: 0.62 Total: -47.53 kcal Atomic # 8 Polarization: -16.62 SS G_CDS: -0.11 Total: -16.73 kcal Atomic # 14 Polarization: 18.90 SS G_CDS: -5.02 Total: 13.88 kcal Total LS contribution 3.74 Total: 3.74 kcal Total: -27.32 -5.34 -32.66 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163187708.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.378 kcal (2) G-P(sol) polarization free energy of solvation -27.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds