Wall clock time and date at job start Mon Mar 30 2020 17:33:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86795 * 120.00162 * 2 1 4 4 H 1.48502 * 109.47226 * 269.99940 * 3 2 1 5 5 H 1.48498 * 109.47225 * 29.99692 * 3 2 1 6 6 H 1.48504 * 109.47278 * 149.99996 * 3 2 1 7 7 C 1.37881 * 119.99839 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00079 * 0.02562 * 7 2 1 9 9 C 1.50700 * 119.99950 * 179.97438 * 7 2 1 10 10 N 1.46501 * 109.47512 * 180.02562 * 9 7 2 11 11 C 1.34770 * 120.00122 * 180.02562 * 10 9 7 12 12 O 1.21282 * 120.00256 * 0.02562 * 11 10 9 13 13 C 1.50703 * 120.00010 * 180.02562 * 11 10 9 14 14 O 1.42902 * 109.47357 * 180.02562 * 13 11 10 15 15 C 1.35898 * 116.99694 * 180.02562 * 14 13 11 16 16 C 1.38735 * 120.05254 * 179.97438 * 15 14 13 17 17 C 1.38144 * 119.94607 * 179.97438 * 16 15 14 18 18 C 1.38266 * 120.05233 * 0.02562 * 17 16 15 19 19 C 1.38269 * 120.11595 * 359.95530 * 18 17 16 20 20 C 1.38142 * 120.04935 * 0.04230 * 19 18 17 21 21 H 0.96999 * 120.00011 * 0.02562 * 1 2 3 22 22 H 1.09008 * 109.46893 * 60.00679 * 9 7 2 23 23 H 1.09001 * 109.47747 * 300.00649 * 9 7 2 24 24 H 0.96998 * 119.99602 * 0.02562 * 10 9 7 25 25 H 1.08999 * 109.46805 * 59.99992 * 13 11 10 26 26 H 1.08998 * 109.47364 * 300.00344 * 13 11 10 27 27 H 1.08002 * 120.02704 * 359.70561 * 16 15 14 28 28 H 1.08001 * 119.97447 * 179.97438 * 17 16 15 29 29 H 1.08000 * 119.94089 * 179.97438 * 18 17 16 30 30 H 1.07992 * 119.97577 * 180.02562 * 19 18 17 31 31 H 1.08005 * 120.02748 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0044 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5114 -1.1941 0.0000 10 7 3.9998 -2.5753 0.0001 11 6 5.3249 -2.8216 0.0001 12 8 6.1130 -1.8997 0.0006 13 6 5.8272 -4.2424 -0.0003 14 8 7.2563 -4.2424 0.0004 15 6 7.8731 -5.4533 -0.0004 16 6 9.2585 -5.5273 -0.0003 17 6 9.8833 -6.7594 -0.0006 18 6 9.1291 -7.9182 -0.0016 19 6 7.7482 -7.8472 -0.0013 20 6 7.1188 -6.6175 -0.0009 21 1 -0.4850 0.8400 -0.0004 22 1 3.8751 -0.6798 0.8896 23 1 3.8745 -0.6808 -0.8904 24 1 3.3695 -3.3126 0.0001 25 1 5.4640 -4.7559 -0.8905 26 1 5.4638 -4.7566 0.8894 27 1 9.8481 -4.6224 -0.0043 28 1 10.9618 -6.8175 -0.0009 29 1 9.6194 -8.8805 -0.0022 30 1 7.1614 -8.7538 -0.0016 31 1 6.0401 -6.5625 -0.0011 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000048151604.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:33:55 Heat of formation + Delta-G solvation = -72.880804 kcal Electronic energy + Delta-G solvation = -15355.462952 eV Core-core repulsion = 12601.297119 eV Total energy + Delta-G solvation = -2754.165833 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.100 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.37568 -40.27110 -38.19008 -36.22671 -34.47650 -32.08782 -31.35876 -30.43387 -28.50116 -24.39083 -23.53678 -22.93968 -21.62657 -19.46753 -19.15011 -17.96317 -17.42961 -17.19630 -16.70336 -16.54385 -15.81805 -15.78036 -15.21750 -14.82115 -14.38471 -14.29816 -14.26196 -13.65321 -13.45937 -13.10427 -12.73001 -12.45584 -12.08093 -11.95510 -11.81190 -11.68126 -10.94496 -10.93168 -10.05469 -9.93206 -9.18658 -8.41495 -6.48730 0.41429 0.49721 1.31995 1.34728 1.46792 1.52634 1.64031 2.27020 2.78651 2.86680 2.93979 3.64294 3.92348 4.01811 4.06976 4.09514 4.31989 4.49444 4.55826 4.71522 4.76678 4.98349 5.11355 5.22253 5.37016 5.39651 5.49931 5.62191 5.85503 6.05366 6.38996 6.51531 6.72550 7.11704 7.28542 8.72975 Molecular weight = 235.10amu Principal moments of inertia in cm(-1) A = 0.067130 B = 0.004145 C = 0.003916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 416.999076 B = 6752.737589 C = 7149.290925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.028 3.972 3 Si 0.935 3.065 4 H -0.265 1.265 5 H -0.273 1.273 6 H -0.262 1.262 7 C -0.547 4.547 8 H 0.064 0.936 9 C 0.231 3.769 10 N -0.696 5.696 11 C 0.501 3.499 12 O -0.586 6.586 13 C 0.052 3.948 14 O -0.323 6.323 15 C 0.102 3.898 16 C -0.175 4.175 17 C -0.082 4.082 18 C -0.162 4.162 19 C -0.083 4.083 20 C -0.218 4.218 21 H 0.273 0.727 22 H 0.014 0.986 23 H 0.013 0.987 24 H 0.414 0.586 25 H 0.123 0.877 26 H 0.123 0.877 27 H 0.124 0.876 28 H 0.152 0.848 29 H 0.151 0.849 30 H 0.152 0.848 31 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.426 -17.210 -0.020 23.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.172 4.172 3 Si 0.759 3.241 4 H -0.190 1.190 5 H -0.198 1.198 6 H -0.186 1.186 7 C -0.585 4.585 8 H 0.082 0.918 9 C 0.108 3.892 10 N -0.347 5.347 11 C 0.287 3.713 12 O -0.466 6.466 13 C -0.026 4.026 14 O -0.236 6.236 15 C 0.058 3.942 16 C -0.193 4.193 17 C -0.100 4.100 18 C -0.180 4.180 19 C -0.101 4.101 20 C -0.236 4.236 21 H 0.082 0.918 22 H 0.032 0.968 23 H 0.031 0.969 24 H 0.251 0.749 25 H 0.140 0.860 26 H 0.140 0.860 27 H 0.142 0.858 28 H 0.170 0.830 29 H 0.168 0.832 30 H 0.170 0.830 31 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 15.877 -16.237 -0.018 22.710 hybrid contribution -0.554 0.775 -0.013 0.953 sum 15.323 -15.462 -0.031 21.769 Atomic orbital electron populations 1.69965 1.07618 1.28661 1.50527 1.25560 0.95520 1.02571 0.93583 0.85897 0.79247 0.79530 0.79468 1.18998 1.19753 1.18613 1.21260 0.89656 0.94784 1.52781 0.91767 1.19160 0.93572 0.80551 0.95942 1.45827 1.05856 1.10238 1.72790 1.20800 0.82622 0.91469 0.76400 1.90676 1.56459 1.47956 1.51547 1.22535 0.79975 0.93534 1.06546 1.86114 1.20248 1.28210 1.89048 1.19431 0.93131 0.84020 0.97663 1.20708 0.91414 0.99895 1.07306 1.21293 1.01290 0.90816 0.96630 1.21482 0.94120 0.99372 1.02993 1.21358 0.95308 0.97370 0.96068 1.21581 1.01214 0.92213 1.08618 0.91778 0.96763 0.96871 0.74927 0.85960 0.85986 0.85811 0.82997 0.83163 0.83023 0.83593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.85 13.96 21.45 0.30 -54.55 16 2 C 0.03 1.58 5.47 84.66 0.46 2.05 16 3 Si 0.93 43.84 27.47 68.60 1.88 45.72 16 4 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 5 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 6 H -0.26 -12.25 6.54 99.48 0.65 -11.60 16 7 C -0.55 -29.65 9.83 25.60 0.25 -29.40 16 8 H 0.06 3.61 7.84 -2.91 -0.02 3.59 16 9 C 0.23 11.23 4.50 85.63 0.38 11.62 16 10 N -0.70 -26.92 5.55 -466.78 -2.59 -29.50 16 11 C 0.50 18.92 7.91 87.66 0.69 19.61 16 12 O -0.59 -28.16 16.50 16.00 0.26 -27.90 16 13 C 0.05 1.36 5.22 71.24 0.37 1.73 16 14 O -0.32 -10.14 9.67 -73.37 -0.71 -10.85 16 15 C 0.10 2.62 6.69 22.51 0.15 2.77 16 16 C -0.17 -4.06 9.99 22.37 0.22 -3.84 16 17 C -0.08 -1.40 10.04 22.25 0.22 -1.18 16 18 C -0.16 -2.36 10.04 22.28 0.22 -2.13 16 19 C -0.08 -1.28 10.04 22.25 0.22 -1.06 16 20 C -0.22 -4.24 9.04 22.36 0.20 -4.04 16 21 H 0.27 15.03 8.31 -92.71 -0.77 14.26 16 22 H 0.01 0.74 7.20 -2.38 -0.02 0.72 16 23 H 0.01 0.68 7.57 -2.39 -0.02 0.66 16 24 H 0.41 13.24 8.32 -92.71 -0.77 12.47 16 25 H 0.12 2.40 7.66 -2.39 -0.02 2.38 16 26 H 0.12 2.40 7.66 -2.39 -0.02 2.38 16 27 H 0.12 2.91 8.06 -2.91 -0.02 2.88 16 28 H 0.15 1.71 8.06 -2.91 -0.02 1.69 16 29 H 0.15 1.30 8.06 -2.91 -0.02 1.28 16 30 H 0.15 1.45 8.06 -2.91 -0.02 1.42 16 31 H 0.15 2.20 6.30 -2.91 -0.02 2.18 16 Total: -1.00 -72.41 275.75 2.88 -69.54 By element: Atomic # 1 Polarization: 11.10 SS G_CDS: 0.32 Total: 11.41 kcal Atomic # 6 Polarization: -7.28 SS G_CDS: 3.41 Total: -3.87 kcal Atomic # 7 Polarization: -81.77 SS G_CDS: -2.29 Total: -84.06 kcal Atomic # 8 Polarization: -38.31 SS G_CDS: -0.45 Total: -38.75 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 1.88 Total: 45.72 kcal Total: -72.41 2.88 -69.54 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048151604.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.343 kcal (2) G-P(sol) polarization free energy of solvation -72.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds