Wall clock time and date at job start Mon Mar 30 2020 17:34:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42904 * 114.00236 * 2 1 4 4 C 1.50699 * 109.47275 * 180.02562 * 3 2 1 5 5 C 1.38362 * 119.95472 * 270.29849 * 4 3 2 6 6 C 1.38309 * 120.16352 * 180.25590 * 5 4 3 7 7 C 1.38083 * 120.08139 * 359.44253 * 6 5 4 8 8 C 1.39008 * 119.91959 * 0.27876 * 7 6 5 9 9 N 1.39535 * 120.08373 * 179.97438 * 8 7 6 10 10 C 1.34773 * 119.99879 * 33.38960 * 9 8 7 11 11 O 1.21742 * 120.00080 * 5.27877 * 10 9 8 12 12 C 1.46175 * 119.99906 * 185.27838 * 10 9 8 13 13 H 1.07998 * 119.99632 * 0.02562 * 12 10 9 14 14 C 1.40124 * 119.99671 * 180.02562 * 12 10 9 15 15 N 1.30633 * 120.00207 * 359.97438 * 14 12 10 16 16 Si 1.86803 * 119.99631 * 179.97438 * 14 12 10 17 17 H 1.48500 * 109.47348 * 89.99615 * 16 14 12 18 18 H 1.48493 * 109.47231 * 209.99942 * 16 14 12 19 19 H 1.48502 * 109.47202 * 329.99843 * 16 14 12 20 20 C 1.38033 * 119.96122 * 89.99738 * 4 3 2 21 21 H 1.09006 * 109.46868 * 59.99715 * 1 2 3 22 22 H 1.09000 * 109.47047 * 180.02562 * 1 2 3 23 23 H 1.09004 * 109.46957 * 300.00214 * 1 2 3 24 24 H 1.09000 * 109.47033 * 60.00224 * 3 2 1 25 25 H 1.09001 * 109.47017 * 300.00278 * 3 2 1 26 26 H 1.07997 * 119.91823 * 0.02562 * 5 4 3 27 27 H 1.08001 * 119.95298 * 179.72412 * 6 5 4 28 28 H 1.08003 * 120.03582 * 180.25486 * 7 6 5 29 29 H 0.97001 * 120.00038 * 213.39565 * 9 8 7 30 30 H 0.96999 * 119.99523 * 180.02562 * 15 14 12 31 31 H 1.07998 * 120.04142 * 0.04502 * 20 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5126 1.1865 -0.0006 5 6 4.2013 1.1255 1.1978 6 6 5.5804 1.0215 1.2023 7 6 6.2743 0.9667 0.0097 8 6 5.5854 1.0219 -1.1964 9 7 6.2831 0.9673 -2.4035 10 6 7.4098 0.2337 -2.4980 11 8 7.7667 -0.4571 -1.5613 12 6 8.2031 0.2676 -3.7253 13 1 7.8866 0.8808 -4.5560 14 6 9.3742 -0.4955 -3.8237 15 7 9.7573 -1.2367 -2.8185 16 14 10.3877 -0.4527 -5.3923 17 1 11.3981 0.6316 -5.2995 18 1 11.0757 -1.7562 -5.5728 19 1 9.4950 -0.1995 -6.5517 20 6 4.1993 1.1322 -1.1968 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 1.6887 1.8464 0.8900 25 1 1.6886 1.8464 -0.8900 26 1 3.6609 1.1628 2.1321 27 1 6.1149 0.9786 2.1398 28 1 7.3509 0.8814 0.0141 29 1 5.9573 1.4573 -3.1746 30 1 10.5682 -1.7646 -2.8866 31 1 3.6607 1.1757 -2.1319 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049511649.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:34:12 Heat of formation + Delta-G solvation = -85.219615 kcal Electronic energy + Delta-G solvation = -15740.016803 eV Core-core repulsion = 12985.315918 eV Total energy + Delta-G solvation = -2754.700884 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.100 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.91047 -39.26747 -38.17853 -35.35632 -34.53210 -32.71508 -30.73395 -28.36200 -27.95225 -26.16837 -23.67285 -23.05068 -21.11934 -19.48507 -17.97228 -17.58314 -17.26707 -16.95469 -16.72635 -16.03102 -15.78290 -15.55366 -14.79465 -14.59920 -14.37007 -13.57640 -13.47622 -13.22042 -13.05865 -12.78875 -12.75919 -12.44182 -12.28172 -12.03827 -11.87499 -11.09134 -10.83654 -10.59383 -10.00158 -9.68768 -8.76659 -8.38002 -6.96448 0.41282 0.52811 1.39303 1.40824 1.56654 2.20346 2.34731 2.69243 2.95784 3.29087 3.57932 3.94298 4.00268 4.25475 4.38142 4.46214 4.52028 4.60378 4.62245 4.70580 4.90080 4.91920 5.09279 5.24102 5.50930 5.56390 5.66337 5.79100 5.93560 6.15317 6.28731 6.40715 6.76311 7.32620 8.33843 8.55806 Molecular weight = 235.10amu Principal moments of inertia in cm(-1) A = 0.044353 B = 0.005155 C = 0.004859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 631.142485 B = 5429.964751 C = 5760.882047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.418 6.418 3 C 0.110 3.890 4 C -0.078 4.078 5 C -0.134 4.134 6 C -0.105 4.105 7 C -0.154 4.154 8 C 0.154 3.846 9 N -0.694 5.694 10 C 0.528 3.472 11 O -0.608 6.608 12 C -0.566 4.566 13 H 0.094 0.906 14 C 0.029 3.971 15 N -0.814 5.814 16 Si 1.004 2.996 17 H -0.260 1.260 18 H -0.272 1.272 19 H -0.247 1.247 20 C -0.150 4.150 21 H 0.052 0.948 22 H 0.090 0.910 23 H 0.058 0.942 24 H 0.083 0.917 25 H 0.072 0.928 26 H 0.150 0.850 27 H 0.139 0.861 28 H 0.095 0.905 29 H 0.407 0.593 30 H 0.278 0.722 31 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.493 6.838 2.636 16.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.338 6.338 3 C 0.034 3.966 4 C -0.079 4.079 5 C -0.153 4.153 6 C -0.123 4.123 7 C -0.176 4.176 8 C 0.057 3.943 9 N -0.339 5.339 10 C 0.334 3.666 11 O -0.493 6.493 12 C -0.602 4.602 13 H 0.112 0.888 14 C -0.187 4.187 15 N -0.443 5.443 16 Si 0.822 3.178 17 H -0.185 1.185 18 H -0.197 1.197 19 H -0.170 1.170 20 C -0.171 4.171 21 H 0.071 0.929 22 H 0.109 0.891 23 H 0.076 0.924 24 H 0.101 0.899 25 H 0.090 0.910 26 H 0.168 0.832 27 H 0.157 0.843 28 H 0.113 0.887 29 H 0.242 0.758 30 H 0.088 0.912 31 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -13.951 6.056 3.311 15.564 hybrid contribution 0.564 0.144 -0.876 1.052 sum -13.387 6.200 2.435 14.952 Atomic orbital electron populations 1.22950 0.79240 1.03683 1.01256 1.87972 1.21664 1.28475 1.95659 1.21377 0.87779 0.84842 1.02573 1.19640 0.95329 1.00376 0.92511 1.21175 0.93393 1.02345 0.98342 1.21193 0.95006 0.99026 0.97096 1.21243 0.99889 1.03524 0.92922 1.18205 0.91668 0.97388 0.87002 1.43696 1.27313 1.51524 1.11333 1.18780 0.79628 0.78661 0.89491 1.90595 1.71408 1.45062 1.42257 1.21420 1.08722 1.29790 1.00266 0.88843 1.27041 0.98185 0.92147 1.01355 1.70154 1.20948 1.20358 1.32863 0.84930 0.77819 0.78558 0.76475 1.18466 1.19699 1.17042 1.20930 0.90921 1.05918 0.99364 0.92913 0.89105 0.92389 0.89943 0.91026 0.83234 0.84323 0.88695 0.75783 0.91207 0.84680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.40 11.01 113.37 1.25 1.65 16 2 O -0.42 -10.95 10.69 -148.98 -1.59 -12.54 16 3 C 0.11 2.51 6.06 71.24 0.43 2.95 16 4 C -0.08 -2.40 5.51 -19.88 -0.11 -2.51 16 5 C -0.13 -4.08 9.70 22.32 0.22 -3.86 16 6 C -0.10 -3.79 10.04 22.25 0.22 -3.57 16 7 C -0.15 -7.12 8.65 22.42 0.19 -6.93 16 8 C 0.15 6.89 6.28 38.29 0.24 7.13 16 9 N -0.69 -33.15 5.32 -307.53 -1.64 -34.79 16 10 C 0.53 31.13 7.47 86.30 0.65 31.77 16 11 O -0.61 -40.90 12.70 -4.48 -0.06 -40.96 16 12 C -0.57 -31.93 9.54 24.79 0.24 -31.69 16 13 H 0.09 4.66 7.85 -2.91 -0.02 4.64 16 14 C 0.03 1.60 5.50 85.33 0.47 2.07 16 15 N -0.81 -49.51 11.82 21.85 0.26 -49.25 16 16 Si 1.00 40.27 29.56 68.60 2.03 42.29 16 17 H -0.26 -9.93 7.11 99.48 0.71 -9.22 16 18 H -0.27 -10.56 7.11 99.48 0.71 -9.86 16 19 H -0.25 -9.18 7.11 99.48 0.71 -8.47 16 20 C -0.15 -5.39 9.62 22.42 0.22 -5.17 16 21 H 0.05 0.73 8.14 -2.38 -0.02 0.71 16 22 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 23 H 0.06 0.73 8.14 -2.38 -0.02 0.71 16 24 H 0.08 1.43 8.09 -2.39 -0.02 1.41 16 25 H 0.07 1.38 8.08 -2.39 -0.02 1.36 16 26 H 0.15 3.44 8.06 -2.91 -0.02 3.42 16 27 H 0.14 4.26 8.06 -2.91 -0.02 4.23 16 28 H 0.09 5.15 6.42 -2.91 -0.02 5.13 16 29 H 0.41 16.29 8.79 -92.71 -0.82 15.47 16 30 H 0.28 15.24 8.29 -92.71 -0.77 14.47 16 31 H 0.14 4.21 8.06 -2.91 -0.02 4.19 16 Total: -1.00 -77.23 276.90 3.34 -73.89 By element: Atomic # 1 Polarization: 29.19 SS G_CDS: 0.33 Total: 29.52 kcal Atomic # 6 Polarization: -12.18 SS G_CDS: 4.01 Total: -8.17 kcal Atomic # 7 Polarization: -82.66 SS G_CDS: -1.38 Total: -84.04 kcal Atomic # 8 Polarization: -51.85 SS G_CDS: -1.65 Total: -53.50 kcal Atomic # 14 Polarization: 40.27 SS G_CDS: 2.03 Total: 42.29 kcal Total: -77.23 3.34 -73.89 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049511649.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.328 kcal (2) G-P(sol) polarization free energy of solvation -77.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds