Wall clock time and date at job start Mon Mar 30 2020 17:37:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31370 * 1 3 3 Si 1.86795 * 120.00299 * 2 1 4 4 H 1.48502 * 109.47067 * 240.00025 * 3 2 1 5 5 H 1.48501 * 109.47230 * 359.97438 * 3 2 1 6 6 H 1.48505 * 109.47437 * 119.99935 * 3 2 1 7 7 C 1.39056 * 119.99819 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99723 * 179.97438 * 7 2 1 9 9 N 1.36837 * 119.99746 * 0.02562 * 7 2 1 10 10 C 1.34784 * 119.99970 * 179.97438 * 9 7 2 11 11 O 1.21674 * 119.99624 * 359.97438 * 10 9 7 12 12 C 1.47018 * 120.00257 * 179.97438 * 10 9 7 13 13 N 1.37048 * 127.05664 * 0.02562 * 12 10 9 14 14 H 0.97004 * 125.15361 * 0.21542 * 13 12 10 15 15 N 1.28824 * 109.68983 * 179.97438 * 13 12 10 16 16 C 1.30127 * 110.80724 * 359.95246 * 15 13 12 17 17 C 1.37310 * 127.05778 * 179.97438 * 12 10 9 18 18 C 1.50381 * 129.90479 * 0.29916 * 17 12 10 19 19 C 1.53508 * 108.11922 * 163.62590 * 18 17 12 20 20 C 1.53032 * 109.68315 * 50.00904 * 19 18 17 21 21 C 1.50863 * 129.04576 * 180.29493 * 16 15 13 22 22 H 0.96994 * 119.99464 * 0.02562 * 1 2 3 23 23 H 0.97001 * 120.00675 * 359.97438 * 9 7 2 24 24 H 1.08995 * 109.73567 * 283.27687 * 18 17 12 25 25 H 1.08999 * 109.73487 * 43.92621 * 18 17 12 26 26 H 1.08992 * 109.43707 * 170.08019 * 19 18 17 27 27 H 1.09010 * 109.42967 * 289.94944 * 19 18 17 28 28 H 1.09004 * 109.39951 * 48.69480 * 20 19 18 29 29 H 1.09000 * 109.40152 * 168.44250 * 20 19 18 30 30 H 1.09001 * 109.71976 * 282.80259 * 21 16 15 31 31 H 1.09005 * 109.72246 * 43.45029 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3137 0.0000 0.0000 3 14 2.2478 1.6176 0.0000 4 1 3.1015 1.6963 -1.2125 5 1 1.2828 2.7464 -0.0006 6 1 3.1015 1.6963 1.2125 7 6 2.0089 -1.2043 0.0005 8 1 3.0890 -1.2043 0.0001 9 7 1.3247 -2.3893 0.0005 10 6 1.9985 -3.5566 0.0005 11 8 3.2152 -3.5566 0.0001 12 6 1.2634 -4.8298 0.0011 13 7 -0.0967 -4.9981 0.0012 14 1 -0.7484 -4.2796 -0.0021 15 7 -0.3785 -6.2551 0.0012 16 6 0.7073 -6.9723 0.0001 17 6 1.7986 -6.0943 0.0007 18 6 3.2369 -6.5330 0.0056 19 6 3.2835 -8.0121 0.4141 20 6 2.2899 -8.8118 -0.4314 21 6 0.8546 -8.4737 -0.0063 22 1 -0.4849 0.8400 -0.0004 23 1 0.3547 -2.3893 0.0005 24 1 3.6618 -6.4130 -0.9910 25 1 3.8017 -5.9351 0.7209 26 1 4.2895 -8.4005 0.2559 27 1 3.0207 -8.1057 1.4679 28 1 2.4260 -8.5615 -1.4836 29 1 2.4680 -9.8776 -0.2881 30 1 0.6623 -8.8664 0.9922 31 1 0.1506 -8.9093 -0.7153 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000126767626.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:37:21 Heat of formation + Delta-G solvation = 12.376146 kcal Electronic energy + Delta-G solvation = -16267.380021 eV Core-core repulsion = 13549.203958 eV Total energy + Delta-G solvation = -2718.176064 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.10648 -38.00272 -36.62364 -34.19878 -31.78009 -31.36214 -30.25998 -28.72168 -25.35115 -24.19061 -22.04505 -21.59760 -19.25502 -18.85118 -18.22549 -17.32302 -15.58273 -15.23611 -14.86188 -14.37023 -14.00111 -13.79705 -13.66819 -13.14444 -12.96416 -12.48743 -12.31023 -11.79899 -11.69872 -11.19850 -11.01923 -10.66545 -10.58468 -10.56037 -10.39755 -9.84167 -9.72665 -8.73620 -8.65215 -8.26700 -8.14746 -6.64551 -4.00671 1.98693 2.98265 3.15153 3.16575 3.20511 3.34230 4.01103 4.17386 4.65081 4.74414 5.06057 5.09268 5.16603 5.36079 5.61584 5.68282 5.79026 5.81810 5.87713 6.00114 6.12625 6.20456 6.31798 6.43649 6.57682 6.71702 7.05646 7.35229 7.46436 7.85235 8.34343 8.50918 8.94621 9.26512 9.77958 10.52488 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.050128 B = 0.006056 C = 0.005454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 558.432470 B = 4622.617789 C = 5132.265682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.026 3.974 3 Si 0.938 3.062 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.271 1.271 7 C -0.300 4.300 8 H 0.110 0.890 9 N -0.545 5.545 10 C 0.498 3.502 11 O -0.575 6.575 12 C 0.013 3.987 13 N -0.399 5.399 14 H 0.443 0.557 15 N -0.287 5.287 16 C 0.024 3.976 17 C -0.155 4.155 18 C -0.036 4.036 19 C -0.118 4.118 20 C -0.115 4.115 21 C -0.027 4.027 22 H 0.277 0.723 23 H 0.388 0.612 24 H 0.071 0.929 25 H 0.081 0.919 26 H 0.064 0.936 27 H 0.062 0.938 28 H 0.065 0.935 29 H 0.066 0.934 30 H 0.076 0.924 31 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.359 -11.835 0.000 11.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.178 4.178 3 Si 0.764 3.236 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.196 1.196 7 C -0.429 4.429 8 H 0.128 0.872 9 N -0.180 5.180 10 C 0.283 3.717 11 O -0.458 6.458 12 C -0.115 4.115 13 N -0.114 5.114 14 H 0.287 0.713 15 N -0.118 5.118 16 C -0.137 4.137 17 C -0.166 4.166 18 C -0.074 4.074 19 C -0.156 4.156 20 C -0.153 4.153 21 C -0.066 4.066 22 H 0.087 0.913 23 H 0.221 0.779 24 H 0.089 0.911 25 H 0.100 0.900 26 H 0.083 0.917 27 H 0.080 0.920 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.094 0.906 31 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -0.106 -11.709 0.003 11.710 hybrid contribution 0.035 1.489 -0.009 1.489 sum -0.070 -10.220 -0.006 10.221 Atomic orbital electron populations 1.69563 1.06184 1.28998 1.48527 1.25389 0.95710 1.00162 0.96529 0.85802 0.78791 0.79681 0.79364 1.19583 1.20763 1.19574 1.19754 0.93734 0.81822 1.47615 0.87240 1.41796 1.08961 1.04840 1.62367 1.16570 0.87127 0.81384 0.86588 1.90653 1.12202 1.85925 1.57049 1.21790 0.83739 0.96949 1.09008 1.43763 1.06171 1.05570 1.55919 0.71257 1.72682 1.27363 0.90268 1.21509 1.21792 0.88760 0.96732 1.06465 1.20211 0.96956 0.90259 1.09167 1.19889 0.90794 0.94474 1.02280 1.21631 0.98791 0.95282 0.99856 1.21573 0.93908 0.99394 1.00459 1.19934 0.97335 0.87400 1.01956 0.91297 0.77864 0.91092 0.90041 0.91748 0.91969 0.91633 0.91552 0.90589 0.90684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.21 13.05 55.50 0.72 -22.49 16 2 C 0.03 0.66 5.50 -17.45 -0.10 0.56 16 3 Si 0.94 20.17 29.55 -169.99 -5.02 15.15 16 4 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 5 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 6 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 7 C -0.30 -8.08 9.68 -15.01 -0.15 -8.22 16 8 H 0.11 3.06 7.15 -52.49 -0.38 2.69 16 9 N -0.55 -13.63 5.27 -12.07 -0.06 -13.70 16 10 C 0.50 12.17 7.75 -12.70 -0.10 12.07 16 11 O -0.57 -15.56 15.36 5.21 0.08 -15.48 16 12 C 0.01 0.26 7.14 -82.31 -0.59 -0.32 16 13 N -0.40 -7.31 6.88 33.32 0.23 -7.08 16 14 H 0.44 7.13 8.24 -190.22 -1.57 5.57 16 15 N -0.29 -5.18 12.13 33.64 0.41 -4.77 16 16 C 0.02 0.40 7.13 -82.55 -0.59 -0.19 16 17 C -0.15 -2.93 6.01 -104.43 -0.63 -3.55 16 18 C -0.04 -0.60 5.53 -27.77 -0.15 -0.76 16 19 C -0.12 -1.47 5.88 -26.45 -0.16 -1.63 16 20 C -0.12 -1.29 5.85 -26.48 -0.15 -1.44 16 21 C -0.03 -0.34 6.32 -27.57 -0.17 -0.52 16 22 H 0.28 6.81 8.31 -40.82 -0.34 6.47 16 23 H 0.39 9.11 7.10 -40.82 -0.29 8.82 16 24 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 25 H 0.08 1.49 7.67 -51.93 -0.40 1.09 16 26 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.06 0.77 8.11 -51.92 -0.42 0.35 16 28 H 0.06 0.76 8.10 -51.93 -0.42 0.34 16 29 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 30 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 265.74 15.07 4.00 4.00 Total: -1.00 -30.16 265.74 -7.14 -37.31 By element: Atomic # 1 Polarization: 15.78 SS G_CDS: -4.72 Total: 11.05 kcal Atomic # 6 Polarization: -1.22 SS G_CDS: -2.78 Total: -4.00 kcal Atomic # 7 Polarization: -49.33 SS G_CDS: 1.30 Total: -48.03 kcal Atomic # 8 Polarization: -15.56 SS G_CDS: 0.08 Total: -15.48 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -5.02 Total: 15.15 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -30.16 -7.14 -37.31 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126767626.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.684 kcal (2) G-P(sol) polarization free energy of solvation -30.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.308 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds