Wall clock time and date at job start Mon Mar 30 2020 17:37:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31370 * 1 3 3 Si 1.86795 * 120.00299 * 2 1 4 4 H 1.48502 * 109.47067 * 240.00025 * 3 2 1 5 5 H 1.48501 * 109.47230 * 359.97438 * 3 2 1 6 6 H 1.48505 * 109.47437 * 119.99935 * 3 2 1 7 7 C 1.39056 * 119.99819 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99723 * 179.97438 * 7 2 1 9 9 N 1.36837 * 119.99746 * 0.02562 * 7 2 1 10 10 C 1.34784 * 119.99970 * 179.97438 * 9 7 2 11 11 O 1.21674 * 119.99624 * 359.97438 * 10 9 7 12 12 C 1.47018 * 120.00257 * 179.97438 * 10 9 7 13 13 N 1.37048 * 127.05664 * 0.02562 * 12 10 9 14 14 H 0.97004 * 125.15361 * 0.21542 * 13 12 10 15 15 N 1.28824 * 109.68983 * 179.97438 * 13 12 10 16 16 C 1.30127 * 110.80724 * 359.95246 * 15 13 12 17 17 C 1.37310 * 127.05778 * 179.97438 * 12 10 9 18 18 C 1.50381 * 129.90479 * 0.29916 * 17 12 10 19 19 C 1.53508 * 108.11922 * 163.62590 * 18 17 12 20 20 C 1.53032 * 109.68315 * 50.00904 * 19 18 17 21 21 C 1.50863 * 129.04576 * 180.29493 * 16 15 13 22 22 H 0.96994 * 119.99464 * 0.02562 * 1 2 3 23 23 H 0.97001 * 120.00675 * 359.97438 * 9 7 2 24 24 H 1.08995 * 109.73567 * 283.27687 * 18 17 12 25 25 H 1.08999 * 109.73487 * 43.92621 * 18 17 12 26 26 H 1.08992 * 109.43707 * 170.08019 * 19 18 17 27 27 H 1.09010 * 109.42967 * 289.94944 * 19 18 17 28 28 H 1.09004 * 109.39951 * 48.69480 * 20 19 18 29 29 H 1.09000 * 109.40152 * 168.44250 * 20 19 18 30 30 H 1.09001 * 109.71976 * 282.80259 * 21 16 15 31 31 H 1.09005 * 109.72246 * 43.45029 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3137 0.0000 0.0000 3 14 2.2478 1.6176 0.0000 4 1 3.1015 1.6963 -1.2125 5 1 1.2828 2.7464 -0.0006 6 1 3.1015 1.6963 1.2125 7 6 2.0089 -1.2043 0.0005 8 1 3.0890 -1.2043 0.0001 9 7 1.3247 -2.3893 0.0005 10 6 1.9985 -3.5566 0.0005 11 8 3.2152 -3.5566 0.0001 12 6 1.2634 -4.8298 0.0011 13 7 -0.0967 -4.9981 0.0012 14 1 -0.7484 -4.2796 -0.0021 15 7 -0.3785 -6.2551 0.0012 16 6 0.7073 -6.9723 0.0001 17 6 1.7986 -6.0943 0.0007 18 6 3.2369 -6.5330 0.0056 19 6 3.2835 -8.0121 0.4141 20 6 2.2899 -8.8118 -0.4314 21 6 0.8546 -8.4737 -0.0063 22 1 -0.4849 0.8400 -0.0004 23 1 0.3547 -2.3893 0.0005 24 1 3.6618 -6.4130 -0.9910 25 1 3.8017 -5.9351 0.7209 26 1 4.2895 -8.4005 0.2559 27 1 3.0207 -8.1057 1.4679 28 1 2.4260 -8.5615 -1.4836 29 1 2.4680 -9.8776 -0.2881 30 1 0.6623 -8.8664 0.9922 31 1 0.1506 -8.9093 -0.7153 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000126767626.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:37:20 Heat of formation + Delta-G solvation = -8.359197 kcal Electronic energy + Delta-G solvation = -16268.279173 eV Core-core repulsion = 13549.203958 eV Total energy + Delta-G solvation = -2719.075216 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.57626 -39.95611 -37.76803 -36.18470 -33.58871 -32.90193 -31.60363 -30.09503 -27.26112 -25.44969 -23.67923 -22.83223 -20.90110 -20.38205 -19.84781 -19.05652 -17.09327 -16.84030 -16.63142 -15.94421 -15.49870 -15.32009 -15.13732 -14.62297 -14.45203 -13.91205 -13.58542 -13.46808 -12.99376 -12.91241 -12.56128 -12.27619 -12.13764 -11.70481 -11.61331 -11.59998 -11.10492 -10.70895 -10.24862 -10.06524 -9.69895 -8.61814 -6.08018 0.34360 1.40352 1.42051 1.51528 1.60727 1.88954 2.21983 2.30564 2.90662 3.15904 3.46392 3.96311 4.01646 4.13440 4.28370 4.43073 4.57171 4.66700 4.75251 4.77094 5.11633 5.12622 5.25363 5.29058 5.29628 5.42970 5.55739 5.68318 5.80635 6.07943 6.38630 6.92578 7.03670 7.30227 7.82189 8.55115 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.050128 B = 0.006056 C = 0.005454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 558.432470 B = 4622.617789 C = 5132.265682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C -0.007 4.007 3 Si 1.001 2.999 4 H -0.269 1.269 5 H -0.268 1.268 6 H -0.269 1.269 7 C -0.338 4.338 8 H 0.090 0.910 9 N -0.551 5.551 10 C 0.499 3.501 11 O -0.609 6.609 12 C -0.022 4.022 13 N -0.393 5.393 14 H 0.449 0.551 15 N -0.286 5.286 16 C 0.026 3.974 17 C -0.155 4.155 18 C -0.041 4.041 19 C -0.111 4.111 20 C -0.111 4.111 21 C -0.029 4.029 22 H 0.284 0.716 23 H 0.393 0.607 24 H 0.066 0.934 25 H 0.056 0.944 26 H 0.087 0.913 27 H 0.065 0.935 28 H 0.060 0.940 29 H 0.104 0.896 30 H 0.095 0.905 31 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.064 -13.476 0.007 13.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.208 4.208 3 Si 0.824 3.176 4 H -0.194 1.194 5 H -0.193 1.193 6 H -0.193 1.193 7 C -0.468 4.468 8 H 0.108 0.892 9 N -0.185 5.185 10 C 0.286 3.714 11 O -0.495 6.495 12 C -0.149 4.149 13 N -0.109 5.109 14 H 0.295 0.705 15 N -0.117 5.117 16 C -0.135 4.135 17 C -0.166 4.166 18 C -0.079 4.079 19 C -0.149 4.149 20 C -0.148 4.148 21 C -0.067 4.067 22 H 0.093 0.907 23 H 0.227 0.773 24 H 0.084 0.916 25 H 0.075 0.925 26 H 0.106 0.894 27 H 0.084 0.916 28 H 0.079 0.921 29 H 0.122 0.878 30 H 0.114 0.886 31 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -0.439 -13.351 0.010 13.358 hybrid contribution 0.100 1.892 -0.012 1.895 sum -0.338 -11.459 -0.002 11.464 Atomic orbital electron populations 1.69619 1.07098 1.30160 1.48185 1.26204 0.96605 1.02774 0.95259 0.84864 0.77766 0.75746 0.79267 1.19361 1.19258 1.19346 1.19766 0.93264 0.83286 1.50457 0.89244 1.41776 1.09124 1.04746 1.62879 1.17024 0.86986 0.82322 0.85083 1.90608 1.13808 1.86798 1.58256 1.21417 0.85040 0.96068 1.12392 1.43746 1.05308 1.06095 1.55792 0.70508 1.72713 1.27835 0.89967 1.21168 1.22585 0.87328 0.98866 1.04735 1.20722 0.98684 0.89961 1.07279 1.19990 0.89085 0.97458 1.01400 1.21625 1.00874 0.92087 1.00284 1.21596 0.92274 1.01272 0.99695 1.20223 0.98868 0.83887 1.03746 0.90670 0.77279 0.91607 0.92546 0.89440 0.91584 0.92089 0.87773 0.88641 0.88859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -47.55 13.05 21.68 0.28 -47.27 16 2 C -0.01 -0.35 5.50 84.96 0.47 0.12 16 3 Si 1.00 41.37 29.55 68.60 2.03 43.39 16 4 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 5 H -0.27 -10.39 7.11 99.48 0.71 -9.69 16 6 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 7 C -0.34 -18.90 9.68 84.11 0.81 -18.09 16 8 H 0.09 5.25 7.15 -2.91 -0.02 5.23 16 9 N -0.55 -28.65 5.27 -310.34 -1.64 -30.28 16 10 C 0.50 25.45 7.75 86.54 0.67 26.12 16 11 O -0.61 -34.58 15.36 -4.27 -0.07 -34.65 16 12 C -0.02 -0.95 7.14 40.41 0.29 -0.66 16 13 N -0.39 -14.42 6.88 -48.49 -0.33 -14.76 16 14 H 0.45 14.69 8.24 -219.80 -1.81 12.87 16 15 N -0.29 -9.92 12.13 -47.47 -0.58 -10.50 16 16 C 0.03 0.84 7.13 43.31 0.31 1.15 16 17 C -0.15 -5.82 6.01 -19.74 -0.12 -5.94 16 18 C -0.04 -1.36 5.53 29.92 0.17 -1.19 16 19 C -0.11 -2.47 5.88 30.78 0.18 -2.29 16 20 C -0.11 -2.02 5.85 30.76 0.18 -1.84 16 21 C -0.03 -0.61 6.32 30.05 0.19 -0.42 16 22 H 0.28 13.79 8.31 -92.71 -0.77 13.02 16 23 H 0.39 19.15 7.10 -92.71 -0.66 18.49 16 24 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 25 H 0.06 2.13 7.67 -2.39 -0.02 2.11 16 26 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 27 H 0.07 1.44 8.11 -2.38 -0.02 1.42 16 28 H 0.06 1.20 8.10 -2.39 -0.02 1.18 16 29 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 30 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 31 H 0.09 1.72 8.14 -2.38 -0.02 1.70 16 Total: -1.00 -66.17 265.74 1.55 -64.61 By element: Atomic # 1 Polarization: 33.80 SS G_CDS: -1.29 Total: 32.50 kcal Atomic # 6 Polarization: -6.20 SS G_CDS: 3.15 Total: -3.05 kcal Atomic # 7 Polarization: -100.55 SS G_CDS: -2.26 Total: -102.81 kcal Atomic # 8 Polarization: -34.58 SS G_CDS: -0.07 Total: -34.65 kcal Atomic # 14 Polarization: 41.37 SS G_CDS: 2.03 Total: 43.39 kcal Total: -66.17 1.55 -64.61 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126767626.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.255 kcal (2) G-P(sol) polarization free energy of solvation -66.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds