Wall clock time and date at job start Mon Mar 30 2020 17:37:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42899 * 113.99778 * 2 1 4 4 C 1.50699 * 109.46785 * 179.97438 * 3 2 1 5 5 C 1.38377 * 119.84666 * 269.72228 * 4 3 2 6 6 C 1.37936 * 120.15076 * 179.72623 * 5 4 3 7 7 C 1.39647 * 119.84763 * 0.57063 * 6 5 4 8 8 C 1.47727 * 120.15332 * 179.68158 * 7 6 5 9 9 O 1.21595 * 119.99629 * 180.02562 * 8 7 6 10 10 N 1.34772 * 119.99874 * 0.02678 * 8 7 6 11 11 C 1.36870 * 119.99972 * 180.02562 * 10 8 7 12 12 H 1.07998 * 119.99863 * 359.97438 * 11 10 8 13 13 C 1.39048 * 120.00004 * 179.97438 * 11 10 8 14 14 N 1.31356 * 120.00185 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 119.99703 * 179.97438 * 13 11 10 16 16 H 1.48496 * 109.47697 * 359.97438 * 15 13 11 17 17 H 1.48497 * 109.46973 * 120.00025 * 15 13 11 18 18 H 1.48504 * 109.47155 * 239.99523 * 15 13 11 19 19 C 1.39648 * 119.69552 * 359.70652 * 7 6 5 20 20 C 1.37935 * 119.84767 * 359.97438 * 19 7 6 21 21 H 1.09000 * 109.47187 * 300.00233 * 1 2 3 22 22 H 1.09001 * 109.46558 * 60.00281 * 1 2 3 23 23 H 1.09001 * 109.47103 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47171 * 299.99768 * 3 2 1 25 25 H 1.08997 * 109.47442 * 59.99964 * 3 2 1 26 26 H 1.08001 * 119.92252 * 0.02562 * 5 4 3 27 27 H 1.07999 * 120.08133 * 180.25526 * 6 5 4 28 28 H 0.96996 * 120.00379 * 359.97438 * 10 8 7 29 29 H 0.97001 * 120.00300 * 179.97438 * 14 13 11 30 30 H 1.08006 * 120.07853 * 179.97438 * 19 7 6 31 31 H 1.08000 * 119.92508 * 179.97438 * 20 19 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1864 0.0006 5 6 4.1990 1.1381 1.2011 6 6 5.5736 1.0235 1.2091 7 6 6.2734 0.9683 0.0019 8 6 7.7461 0.8527 0.0025 9 8 8.3526 0.8053 -1.0503 10 7 8.4174 0.7997 1.1700 11 6 9.7819 0.6931 1.1706 12 1 10.3206 0.6510 0.2355 13 6 10.4745 0.6389 2.3751 14 7 9.8193 0.6906 3.5124 15 14 12.3368 0.4927 2.3758 16 1 12.8309 0.4530 0.9760 17 1 12.9249 1.6629 3.0758 18 1 12.7351 -0.7546 3.0764 19 6 5.5746 1.0234 -1.2060 20 6 4.1995 1.1314 -1.1993 21 1 -0.3633 0.5139 0.8900 22 1 -0.3632 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 1.6886 1.8464 -0.8900 25 1 1.6886 1.8464 0.8899 26 1 3.6569 1.1853 2.1340 27 1 6.1079 0.9817 2.1467 28 1 7.9336 0.8378 2.0098 29 1 10.3024 0.6524 4.3526 30 1 6.1097 0.9817 -2.1433 31 1 3.6579 1.1745 -2.1326 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000126899109.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:37:22 Heat of formation + Delta-G solvation = -83.826685 kcal Electronic energy + Delta-G solvation = -15543.821123 eV Core-core repulsion = 12789.180640 eV Total energy + Delta-G solvation = -2754.640483 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.100 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.95351 -39.52458 -38.23116 -36.15703 -33.69856 -32.80310 -31.85502 -28.62618 -27.17601 -26.10804 -23.55477 -23.26772 -21.12431 -20.21827 -18.43162 -17.34851 -17.21535 -16.80829 -16.64228 -16.02593 -15.65072 -15.56076 -15.26767 -14.97175 -14.41202 -14.00551 -13.57885 -13.49965 -13.08277 -12.96278 -12.58048 -12.41515 -12.12630 -12.09469 -11.94376 -11.62969 -10.59293 -10.55335 -10.17062 -9.93044 -9.80287 -8.58838 -6.04096 -0.12753 0.44107 1.37022 1.40148 1.55468 1.98197 2.24994 2.71567 3.07449 3.16105 3.31872 3.83589 3.90165 4.03226 4.20522 4.35062 4.41693 4.49392 4.61337 4.63472 4.72182 4.87579 4.92924 5.07735 5.29415 5.36888 5.48253 5.54874 5.89329 5.96702 6.27087 6.46524 6.98849 7.39216 7.96019 8.58728 Molecular weight = 235.10amu Principal moments of inertia in cm(-1) A = 0.053826 B = 0.004756 C = 0.004454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 520.065539 B = 5885.663992 C = 6284.444310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.414 6.414 3 C 0.106 3.894 4 C -0.086 4.086 5 C -0.098 4.098 6 C -0.109 4.109 7 C -0.121 4.121 8 C 0.459 3.541 9 O -0.639 6.639 10 N -0.550 5.550 11 C -0.340 4.340 12 H 0.084 0.916 13 C -0.009 4.009 14 N -0.910 5.910 15 Si 1.001 2.999 16 H -0.272 1.272 17 H -0.266 1.266 18 H -0.266 1.266 19 C -0.090 4.090 20 C -0.099 4.099 21 H 0.054 0.946 22 H 0.054 0.946 23 H 0.092 0.908 24 H 0.079 0.921 25 H 0.078 0.922 26 H 0.154 0.846 27 H 0.125 0.875 28 H 0.398 0.602 29 H 0.284 0.716 30 H 0.122 0.878 31 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.760 1.826 -1.637 17.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.334 6.334 3 C 0.030 3.970 4 C -0.087 4.087 5 C -0.116 4.116 6 C -0.128 4.128 7 C -0.124 4.124 8 C 0.249 3.751 9 O -0.529 6.529 10 N -0.185 5.185 11 C -0.469 4.469 12 H 0.102 0.898 13 C -0.210 4.210 14 N -0.549 5.549 15 Si 0.824 3.176 16 H -0.196 1.196 17 H -0.191 1.191 18 H -0.191 1.191 19 C -0.110 4.110 20 C -0.116 4.116 21 H 0.073 0.927 22 H 0.073 0.927 23 H 0.110 0.890 24 H 0.097 0.903 25 H 0.096 0.904 26 H 0.172 0.828 27 H 0.143 0.857 28 H 0.234 0.766 29 H 0.093 0.907 30 H 0.140 0.860 31 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -17.165 1.625 -2.076 17.367 hybrid contribution 0.841 0.078 0.484 0.974 sum -16.324 1.704 -1.592 16.490 Atomic orbital electron populations 1.22950 0.79197 1.03743 1.01234 1.87955 1.21630 1.28176 1.95680 1.21422 0.87606 0.85061 1.02911 1.20045 0.95726 0.99952 0.92978 1.21219 0.92692 0.98554 0.99126 1.21437 0.95500 0.99237 0.96618 1.20156 0.92095 1.04277 0.95880 1.18587 0.88119 0.84397 0.83968 1.90532 1.70820 1.59157 1.32419 1.41906 1.07350 1.61857 1.07354 1.19858 0.82655 1.49767 0.94666 0.89843 1.26223 1.05722 0.95432 0.93625 1.69643 1.38845 1.48133 0.98276 0.84757 0.75658 0.78670 0.78547 1.19636 1.19062 1.19139 1.21255 0.94831 0.97976 0.96911 1.21221 0.92479 0.98801 0.99147 0.92741 0.92697 0.88991 0.90293 0.90352 0.82841 0.85727 0.76609 0.90654 0.86020 0.82775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 11.01 113.37 1.25 1.57 16 2 O -0.41 -8.98 10.69 -148.98 -1.59 -10.57 16 3 C 0.11 1.97 6.06 71.24 0.43 2.40 16 4 C -0.09 -2.24 5.52 -19.80 -0.11 -2.35 16 5 C -0.10 -2.76 9.68 22.23 0.22 -2.54 16 6 C -0.11 -3.90 9.54 22.54 0.22 -3.69 16 7 C -0.12 -5.17 5.87 -20.09 -0.12 -5.28 16 8 C 0.46 24.73 7.72 86.75 0.67 25.40 16 9 O -0.64 -38.83 15.92 -4.01 -0.06 -38.89 16 10 N -0.55 -30.37 5.23 -309.74 -1.62 -31.99 16 11 C -0.34 -20.00 9.68 84.10 0.81 -19.19 16 12 H 0.08 5.21 7.15 -2.91 -0.02 5.18 16 13 C -0.01 -0.47 5.50 84.96 0.47 0.00 16 14 N -0.91 -49.11 13.05 21.68 0.28 -48.83 16 15 Si 1.00 42.80 29.55 68.60 2.03 44.83 16 16 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 17 H -0.27 -10.74 7.11 99.48 0.71 -10.03 16 18 H -0.27 -10.80 7.11 99.48 0.71 -10.09 16 19 C -0.09 -3.34 9.60 22.54 0.22 -3.13 16 20 C -0.10 -2.78 9.68 22.23 0.22 -2.57 16 21 H 0.05 0.56 8.14 -2.39 -0.02 0.55 16 22 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 23 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 24 H 0.08 1.14 8.08 -2.39 -0.02 1.12 16 25 H 0.08 1.15 8.08 -2.39 -0.02 1.13 16 26 H 0.15 3.32 8.06 -2.91 -0.02 3.30 16 27 H 0.12 4.49 6.41 -2.91 -0.02 4.47 16 28 H 0.40 20.66 5.93 -92.71 -0.55 20.11 16 29 H 0.28 14.08 8.31 -92.71 -0.77 13.31 16 30 H 0.12 4.68 7.65 -2.91 -0.02 4.66 16 31 H 0.15 3.29 8.06 -2.91 -0.02 3.27 16 Total: -1.00 -71.26 277.76 3.90 -67.36 By element: Atomic # 1 Polarization: 26.87 SS G_CDS: 0.60 Total: 27.46 kcal Atomic # 6 Polarization: -13.64 SS G_CDS: 4.27 Total: -9.37 kcal Atomic # 7 Polarization: -79.48 SS G_CDS: -1.34 Total: -80.82 kcal Atomic # 8 Polarization: -47.81 SS G_CDS: -1.66 Total: -49.46 kcal Atomic # 14 Polarization: 42.80 SS G_CDS: 2.03 Total: 44.83 kcal Total: -71.26 3.90 -67.36 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126899109.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.466 kcal (2) G-P(sol) polarization free energy of solvation -71.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds