Wall clock time and date at job start Mon Mar 30 2020 17:38:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.46984 * 2 1 4 4 H 1.09000 * 109.47380 * 54.99670 * 3 2 1 5 5 C 1.50705 * 109.46992 * 174.99684 * 3 2 1 6 6 H 1.07999 * 119.99650 * 119.99685 * 5 3 2 7 7 C 1.37873 * 120.00157 * 299.99459 * 5 3 2 8 8 N 1.31516 * 119.99764 * 0.02562 * 7 5 3 9 9 Si 1.86796 * 120.00287 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.46779 * 60.00229 * 9 7 5 11 11 H 1.48499 * 109.47224 * 179.97438 * 9 7 5 12 12 H 1.48496 * 109.47462 * 300.00726 * 9 7 5 13 13 O 1.45198 * 109.46845 * 294.99476 * 3 2 1 14 14 C 1.34707 * 117.00309 * 90.00270 * 13 3 2 15 15 O 1.21479 * 119.99714 * 359.97438 * 14 13 3 16 16 C 1.47713 * 120.00529 * 179.97438 * 14 13 3 17 17 C 1.40076 * 120.56670 * 180.26933 * 16 14 13 18 18 C 1.38352 * 118.28352 * 180.27148 * 17 16 14 19 19 C 1.38356 * 119.30810 * 359.72596 * 18 17 16 20 20 N 1.31931 * 121.08955 * 0.02562 * 19 18 17 21 21 C 1.31686 * 121.88953 * 359.97438 * 20 19 18 22 22 H 1.08999 * 109.46635 * 60.00454 * 1 2 3 23 23 H 1.09000 * 109.46710 * 180.02562 * 1 2 3 24 24 H 1.08994 * 109.47212 * 300.00657 * 1 2 3 25 25 H 1.08994 * 109.47212 * 239.99343 * 2 1 3 26 26 H 1.08999 * 109.46635 * 119.99546 * 2 1 3 27 27 H 0.97002 * 119.99906 * 180.02562 * 8 7 5 28 28 H 1.07995 * 120.86243 * 359.97259 * 17 16 14 29 29 H 1.07996 * 120.34594 * 179.71182 * 18 17 16 30 30 H 1.08001 * 119.45870 * 180.02562 * 19 18 17 31 31 H 1.08002 * 119.71968 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5419 1.4443 0.1239 6 1 4.1472 1.8888 -0.6522 7 6 4.1433 0.8785 1.2281 8 7 3.4061 0.3368 2.1730 9 14 6.0049 0.8801 1.3814 10 1 6.5004 2.2801 1.3810 11 1 6.3977 0.2170 2.6507 12 1 6.5967 0.1454 0.2346 13 8 1.6559 2.0916 -1.2408 14 6 0.4686 2.7276 -1.2563 15 8 -0.2272 2.7393 -0.2605 16 6 0.0126 3.4108 -2.4839 17 6 -1.2174 4.0805 -2.5114 18 6 -1.6007 4.6996 -3.6878 19 6 -0.7625 4.6429 -4.7872 20 7 0.3931 4.0089 -4.7308 21 6 0.8023 3.4045 -3.6347 22 1 -0.3632 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8899 25 1 1.8934 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 3.8292 -0.0609 2.9500 28 1 -1.8525 4.1088 -1.6383 29 1 -2.5443 5.2214 -3.7475 30 1 -1.0591 5.1257 -5.7066 31 1 1.7547 2.8953 -3.6278 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000195577126.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:38:28 Heat of formation + Delta-G solvation = -78.406111 kcal Electronic energy + Delta-G solvation = -16252.886000 eV Core-core repulsion = 13498.480571 eV Total energy + Delta-G solvation = -2754.405429 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.100 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.74444 -40.54043 -37.67125 -35.54327 -33.67670 -33.36401 -32.47514 -29.35327 -26.24468 -25.00889 -24.50003 -22.63570 -21.47030 -19.33857 -18.63618 -18.12469 -17.32974 -17.21234 -16.89192 -16.40133 -15.33003 -15.02653 -14.80152 -14.69215 -14.18148 -13.96732 -13.42035 -13.35862 -13.18705 -13.12228 -12.81472 -12.57425 -12.15886 -11.80225 -11.61547 -11.42331 -11.03343 -10.85606 -10.58317 -10.51320 -10.26097 -8.28078 -6.45026 -0.48426 0.16690 1.41844 1.45391 1.53066 1.58551 1.90855 2.40599 2.78645 3.01739 3.38184 3.74733 3.80522 3.92065 4.06302 4.35183 4.37220 4.40635 4.53800 4.71904 4.80755 4.99874 5.03318 5.11061 5.18726 5.34534 5.49705 5.57176 5.64699 5.92626 6.07761 6.58039 6.79595 6.91813 7.25896 8.78607 Molecular weight = 235.10amu Principal moments of inertia in cm(-1) A = 0.036011 B = 0.006483 C = 0.005836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 777.349382 B = 4318.228142 C = 4796.485068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.130 4.130 3 C 0.226 3.774 4 H 0.009 0.991 5 C -0.552 4.552 6 H 0.066 0.934 7 C 0.019 3.981 8 N -0.914 5.914 9 Si 0.980 3.020 10 H -0.270 1.270 11 H -0.277 1.277 12 H -0.264 1.264 13 O -0.356 6.356 14 C 0.496 3.504 15 O -0.538 6.538 16 C -0.192 4.192 17 C -0.024 4.024 18 C -0.165 4.165 19 C 0.128 3.872 20 N -0.510 5.510 21 C 0.151 3.849 22 H 0.033 0.967 23 H 0.062 0.938 24 H 0.037 0.963 25 H 0.046 0.954 26 H 0.088 0.912 27 H 0.271 0.729 28 H 0.150 0.850 29 H 0.188 0.812 30 H 0.205 0.795 31 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.451 6.546 -11.456 15.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.168 4.168 3 C 0.173 3.827 4 H 0.027 0.973 5 C -0.589 4.589 6 H 0.085 0.915 7 C -0.181 4.181 8 N -0.551 5.551 9 Si 0.803 3.197 10 H -0.195 1.195 11 H -0.202 1.202 12 H -0.189 1.189 13 O -0.273 6.273 14 C 0.342 3.658 15 O -0.430 6.430 16 C -0.195 4.195 17 C -0.050 4.050 18 C -0.184 4.184 19 C -0.028 4.028 20 N -0.219 5.219 21 C -0.006 4.006 22 H 0.053 0.947 23 H 0.081 0.919 24 H 0.056 0.944 25 H 0.065 0.935 26 H 0.107 0.893 27 H 0.080 0.920 28 H 0.168 0.832 29 H 0.205 0.795 30 H 0.221 0.779 31 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -8.073 6.396 -11.703 15.590 hybrid contribution 0.345 -0.245 1.538 1.595 sum -7.728 6.151 -10.166 14.173 Atomic orbital electron populations 1.21714 0.96324 1.00663 1.00014 1.21879 0.94443 0.98000 1.02479 1.20437 0.94653 0.89311 0.78297 0.97345 1.21295 0.90387 1.40196 1.07042 0.91529 1.25777 1.04192 0.93796 0.94305 1.70001 1.37515 1.37792 1.09832 0.85272 0.77706 0.78747 0.77930 1.19488 1.20152 1.18873 1.86504 1.35039 1.62903 1.42823 1.21482 0.79975 0.76150 0.88184 1.90752 1.55955 1.59798 1.36506 1.20336 0.99693 1.05932 0.93548 1.21994 0.92483 0.90395 1.00110 1.22560 1.03310 1.00741 0.91839 1.23864 0.87719 0.91273 0.99939 1.67874 1.17675 1.09647 1.26710 1.23194 0.98540 0.92229 0.86676 0.94743 0.91887 0.94379 0.93507 0.89336 0.91971 0.83228 0.79469 0.77863 0.81884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.76 8.56 71.98 0.62 -5.14 16 2 C -0.13 -6.60 5.49 30.60 0.17 -6.43 16 3 C 0.23 12.41 2.25 29.85 0.07 12.48 16 4 H 0.01 0.54 7.16 -2.39 -0.02 0.52 16 5 C -0.55 -31.42 8.90 25.60 0.23 -31.19 16 6 H 0.07 3.71 7.81 -2.91 -0.02 3.69 16 7 C 0.02 1.06 5.29 84.65 0.45 1.51 16 8 N -0.91 -52.24 11.29 21.45 0.24 -52.00 16 9 Si 0.98 42.94 29.54 68.60 2.03 44.97 16 10 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 11 H -0.28 -11.66 7.11 99.48 0.71 -10.95 16 12 H -0.26 -11.12 7.11 99.48 0.71 -10.41 16 13 O -0.36 -17.38 9.08 -56.17 -0.51 -17.89 16 14 C 0.50 21.54 6.36 70.33 0.45 21.99 16 15 O -0.54 -25.59 13.60 19.91 0.27 -25.32 16 16 C -0.19 -6.36 5.89 -20.00 -0.12 -6.48 16 17 C -0.02 -0.61 9.72 22.74 0.22 -0.39 16 18 C -0.17 -2.73 10.10 22.33 0.23 -2.50 16 19 C 0.13 2.26 11.17 84.71 0.95 3.20 16 20 N -0.51 -13.26 10.34 -194.71 -2.01 -15.28 16 21 C 0.15 4.62 10.79 85.04 0.92 5.54 16 22 H 0.03 1.47 6.06 -2.39 -0.01 1.46 16 23 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 24 H 0.04 1.78 7.79 -2.39 -0.02 1.76 16 25 H 0.05 2.28 8.14 -2.39 -0.02 2.26 16 26 H 0.09 4.88 5.95 -2.39 -0.01 4.87 16 27 H 0.27 14.52 8.31 -92.71 -0.77 13.75 16 28 H 0.15 3.64 7.74 -2.91 -0.02 3.62 16 29 H 0.19 1.40 8.06 -2.91 -0.02 1.37 16 30 H 0.20 1.71 8.06 -2.91 -0.02 1.68 16 31 H 0.16 5.16 7.62 -2.91 -0.02 5.14 16 Total: -1.00 -67.97 270.54 5.31 -62.66 By element: Atomic # 1 Polarization: 9.15 SS G_CDS: 1.13 Total: 10.28 kcal Atomic # 6 Polarization: -11.59 SS G_CDS: 4.17 Total: -7.42 kcal Atomic # 7 Polarization: -65.51 SS G_CDS: -1.77 Total: -67.28 kcal Atomic # 8 Polarization: -42.98 SS G_CDS: -0.24 Total: -43.21 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 2.03 Total: 44.97 kcal Total: -67.97 5.31 -62.66 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000195577126.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.748 kcal (2) G-P(sol) polarization free energy of solvation -67.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds