Wall clock time and date at job start Mon Mar 30 2020 17:38:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47188 * 2 1 4 4 H 1.09004 * 109.47131 * 305.00119 * 3 2 1 5 5 C 1.50702 * 109.47245 * 185.00230 * 3 2 1 6 6 H 1.08002 * 120.00299 * 240.00501 * 5 3 2 7 7 C 1.37884 * 119.99942 * 59.72060 * 5 3 2 8 8 N 1.31514 * 119.99698 * 0.28408 * 7 5 3 9 9 Si 1.86794 * 119.99837 * 180.27476 * 7 5 3 10 10 H 1.48504 * 109.47196 * 60.00645 * 9 7 5 11 11 H 1.48504 * 109.46887 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47679 * 300.00280 * 9 7 5 13 13 O 1.45202 * 109.47304 * 65.00334 * 3 2 1 14 14 C 1.34712 * 116.99784 * 270.00153 * 13 3 2 15 15 O 1.21473 * 119.99714 * 359.97438 * 14 13 3 16 16 C 1.47719 * 119.99710 * 179.97438 * 14 13 3 17 17 C 1.40080 * 120.56123 * 179.72484 * 16 14 13 18 18 C 1.38344 * 118.28238 * 179.73438 * 17 16 14 19 19 C 1.38367 * 119.30729 * 0.53382 * 18 17 16 20 20 N 1.31937 * 121.09007 * 359.72951 * 19 18 17 21 21 C 1.31687 * 121.88314 * 359.97438 * 20 19 18 22 22 H 1.08994 * 109.47398 * 180.02562 * 1 2 3 23 23 H 1.09005 * 109.46737 * 299.99648 * 1 2 3 24 24 H 1.08996 * 109.47100 * 59.99805 * 1 2 3 25 25 H 1.09005 * 109.46737 * 240.00352 * 2 1 3 26 26 H 1.08996 * 109.47570 * 120.00444 * 2 1 3 27 27 H 0.97005 * 119.99651 * 179.97438 * 8 7 5 28 28 H 1.08001 * 120.85486 * 359.97438 * 17 16 14 29 29 H 1.07998 * 120.35040 * 180.25761 * 18 17 16 30 30 H 1.07997 * 119.45546 * 179.74446 * 19 18 17 31 31 H 1.07999 * 119.71235 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5419 1.4443 -0.1239 6 1 4.1473 1.8888 0.6522 7 6 4.1435 0.8733 -1.2254 8 7 3.4063 0.3320 -2.1705 9 14 6.0054 0.8687 -1.3752 10 1 6.5928 0.1354 -0.2252 11 1 6.3984 0.2005 -2.6418 12 1 6.5053 2.2671 -1.3780 13 8 1.6560 2.0917 1.2407 14 6 0.4685 2.7277 1.2561 15 8 -0.2267 2.7400 0.2601 16 6 0.0121 3.4101 2.4841 17 6 -1.2179 4.0799 2.5115 18 6 -1.6015 4.6982 3.6881 19 6 -0.7613 4.6454 4.7862 20 7 0.3945 4.0116 4.7298 21 6 0.8013 3.4030 3.6352 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3633 0.5138 0.8901 24 1 -0.3633 0.5138 -0.8899 25 1 1.8933 -0.5138 -0.8901 26 1 1.8934 -0.5139 0.8899 27 1 3.8295 -0.0694 -2.9455 28 1 -1.8521 4.1095 1.6377 29 1 -2.5450 5.2205 3.7476 30 1 -1.0566 5.1308 5.7046 31 1 1.7543 2.8950 3.6279 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000195577127.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:38:32 Heat of formation + Delta-G solvation = -78.389236 kcal Electronic energy + Delta-G solvation = -16253.025438 eV Core-core repulsion = 13498.620741 eV Total energy + Delta-G solvation = -2754.404697 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.100 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.74420 -40.53996 -37.67178 -35.54446 -33.67615 -33.36290 -32.47479 -29.35330 -26.24411 -25.00797 -24.49970 -22.63555 -21.47069 -19.33822 -18.63633 -18.12444 -17.32956 -17.21256 -16.89098 -16.40151 -15.32992 -15.02648 -14.80189 -14.69193 -14.18147 -13.96777 -13.41960 -13.35924 -13.18722 -13.12237 -12.81467 -12.57398 -12.15846 -11.80214 -11.61565 -11.42390 -11.03346 -10.85454 -10.58378 -10.51319 -10.26100 -8.28090 -6.44989 -0.48433 0.16707 1.41848 1.45389 1.53061 1.58548 1.90869 2.40598 2.78623 3.01704 3.38195 3.74719 3.80529 3.92026 4.06323 4.35186 4.37152 4.40636 4.53841 4.71902 4.80757 4.99858 5.03336 5.11066 5.18712 5.34519 5.49676 5.57169 5.64715 5.92685 6.07790 6.58024 6.79557 6.91802 7.25863 8.78565 Molecular weight = 235.10amu Principal moments of inertia in cm(-1) A = 0.036037 B = 0.006482 C = 0.005835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 776.793865 B = 4318.615603 C = 4797.240622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.130 4.130 3 C 0.226 3.774 4 H 0.009 0.991 5 C -0.552 4.552 6 H 0.066 0.934 7 C 0.019 3.981 8 N -0.914 5.914 9 Si 0.980 3.020 10 H -0.264 1.264 11 H -0.277 1.277 12 H -0.270 1.270 13 O -0.356 6.356 14 C 0.497 3.503 15 O -0.538 6.538 16 C -0.192 4.192 17 C -0.024 4.024 18 C -0.165 4.165 19 C 0.128 3.872 20 N -0.510 5.510 21 C 0.151 3.849 22 H 0.062 0.938 23 H 0.033 0.967 24 H 0.037 0.963 25 H 0.089 0.911 26 H 0.046 0.954 27 H 0.271 0.729 28 H 0.150 0.850 29 H 0.188 0.812 30 H 0.205 0.795 31 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.453 6.542 11.454 15.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.168 4.168 3 C 0.173 3.827 4 H 0.027 0.973 5 C -0.589 4.589 6 H 0.085 0.915 7 C -0.181 4.181 8 N -0.551 5.551 9 Si 0.803 3.197 10 H -0.189 1.189 11 H -0.202 1.202 12 H -0.195 1.195 13 O -0.273 6.273 14 C 0.342 3.658 15 O -0.430 6.430 16 C -0.195 4.195 17 C -0.050 4.050 18 C -0.184 4.184 19 C -0.028 4.028 20 N -0.219 5.219 21 C -0.006 4.006 22 H 0.081 0.919 23 H 0.052 0.948 24 H 0.056 0.944 25 H 0.107 0.893 26 H 0.065 0.935 27 H 0.080 0.920 28 H 0.168 0.832 29 H 0.205 0.795 30 H 0.221 0.779 31 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -8.072 6.397 11.699 15.587 hybrid contribution 0.344 -0.254 -1.532 1.591 sum -7.728 6.143 10.167 14.171 Atomic orbital electron populations 1.21713 0.96323 1.00664 1.00012 1.21881 0.94446 0.98006 1.02492 1.20436 0.94653 0.89307 0.78301 0.97344 1.21298 0.90381 1.40068 1.07183 0.91532 1.25780 1.04195 0.93788 0.94305 1.70001 1.37505 1.37708 1.09915 0.85272 0.77701 0.78744 0.77936 1.18878 1.20150 1.19482 1.86507 1.35039 1.62902 1.42826 1.21483 0.79973 0.76143 0.88191 1.90750 1.55981 1.59779 1.36493 1.20336 0.99699 1.05946 0.93528 1.21994 0.92472 0.90406 1.00112 1.22561 1.03307 1.00737 0.91841 1.23869 0.87702 0.91309 0.99917 1.67879 1.17729 1.09589 1.26707 1.23191 0.98537 0.92223 0.86690 0.91888 0.94753 0.94371 0.89309 0.93519 0.91969 0.83226 0.79467 0.77863 0.81888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.76 8.56 71.98 0.62 -5.14 16 2 C -0.13 -6.61 5.48 30.59 0.17 -6.44 16 3 C 0.23 12.42 2.25 29.85 0.07 12.48 16 4 H 0.01 0.54 7.16 -2.38 -0.02 0.52 16 5 C -0.55 -31.43 8.90 25.60 0.23 -31.20 16 6 H 0.07 3.71 7.81 -2.91 -0.02 3.69 16 7 C 0.02 1.06 5.29 84.66 0.45 1.51 16 8 N -0.91 -52.23 11.28 21.45 0.24 -51.99 16 9 Si 0.98 42.94 29.54 68.60 2.03 44.97 16 10 H -0.26 -11.12 7.11 99.48 0.71 -10.41 16 11 H -0.28 -11.66 7.11 99.48 0.71 -10.95 16 12 H -0.27 -11.55 7.11 99.48 0.71 -10.85 16 13 O -0.36 -17.39 9.08 -56.22 -0.51 -17.90 16 14 C 0.50 21.55 6.36 70.33 0.45 21.99 16 15 O -0.54 -25.59 13.61 19.92 0.27 -25.32 16 16 C -0.19 -6.37 5.89 -20.00 -0.12 -6.48 16 17 C -0.02 -0.61 9.72 22.74 0.22 -0.39 16 18 C -0.17 -2.73 10.10 22.33 0.23 -2.50 16 19 C 0.13 2.26 11.17 84.71 0.95 3.20 16 20 N -0.51 -13.26 10.35 -194.71 -2.01 -15.28 16 21 C 0.15 4.62 10.79 85.04 0.92 5.54 16 22 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 23 H 0.03 1.47 6.06 -2.38 -0.01 1.45 16 24 H 0.04 1.78 7.79 -2.39 -0.02 1.76 16 25 H 0.09 4.90 5.94 -2.38 -0.01 4.88 16 26 H 0.05 2.28 8.14 -2.39 -0.02 2.26 16 27 H 0.27 14.52 8.31 -92.70 -0.77 13.75 16 28 H 0.15 3.64 7.74 -2.91 -0.02 3.62 16 29 H 0.19 1.40 8.06 -2.91 -0.02 1.37 16 30 H 0.20 1.71 8.06 -2.91 -0.02 1.68 16 31 H 0.16 5.16 7.62 -2.91 -0.02 5.14 16 Total: -1.00 -67.97 270.52 5.31 -62.66 By element: Atomic # 1 Polarization: 9.16 SS G_CDS: 1.13 Total: 10.30 kcal Atomic # 6 Polarization: -11.60 SS G_CDS: 4.17 Total: -7.44 kcal Atomic # 7 Polarization: -65.49 SS G_CDS: -1.77 Total: -67.26 kcal Atomic # 8 Polarization: -42.98 SS G_CDS: -0.24 Total: -43.22 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 2.03 Total: 44.97 kcal Total: -67.97 5.31 -62.66 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000195577127.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.732 kcal (2) G-P(sol) polarization free energy of solvation -67.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds