Wall clock time and date at job start Mon Mar 30 2020 17:38:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.21292 * 119.99937 * 2 1 4 4 N 1.34783 * 119.99984 * 180.02562 * 2 1 3 5 5 C 1.39992 * 119.99962 * 174.44841 * 4 2 1 6 6 C 1.38942 * 120.00260 * 335.15136 * 5 4 2 7 7 C 1.37981 * 119.99927 * 179.97438 * 6 5 4 8 8 C 1.38929 * 119.99879 * 359.97438 * 7 6 5 9 9 O 1.35781 * 119.99637 * 179.97438 * 8 7 6 10 10 C 1.34810 * 116.99753 * 354.83986 * 9 8 7 11 11 H 1.07997 * 120.00546 * 5.01789 * 10 9 8 12 12 C 1.38632 * 119.99944 * 185.01635 * 10 9 8 13 13 N 1.31578 * 120.00050 * 359.97438 * 12 10 9 14 14 Si 1.86804 * 120.00288 * 180.02562 * 12 10 9 15 15 H 1.48496 * 109.47025 * 359.97438 * 14 12 10 16 16 H 1.48498 * 109.47417 * 119.99747 * 14 12 10 17 17 H 1.48500 * 109.46702 * 239.99988 * 14 12 10 18 18 C 1.38884 * 120.00522 * 0.28026 * 8 7 6 19 19 C 1.38029 * 120.00124 * 359.44483 * 18 8 7 20 20 C 1.50699 * 120.00100 * 180.27955 * 19 18 8 21 21 H 1.09005 * 109.47075 * 269.99596 * 1 2 3 22 22 H 1.09002 * 109.47155 * 29.99463 * 1 2 3 23 23 H 1.09003 * 109.47682 * 150.00069 * 1 2 3 24 24 H 0.96999 * 119.99614 * 354.45015 * 4 2 1 25 25 H 1.08005 * 120.00076 * 0.02562 * 6 5 4 26 26 H 1.07996 * 119.99828 * 179.97438 * 7 6 5 27 27 H 0.96997 * 120.00294 * 179.97438 * 13 12 10 28 28 H 1.07997 * 119.99925 * 179.72717 * 18 8 7 29 29 H 1.09004 * 109.46739 * 270.26983 * 20 19 18 30 30 H 1.08998 * 109.47366 * 30.27267 * 20 19 18 31 31 H 1.09001 * 109.47100 * 150.28120 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1673 -0.0005 5 6 3.5759 -1.1700 -0.1178 6 6 4.2236 -0.1051 -0.7316 7 6 5.5986 -0.1076 -0.8467 8 6 6.3354 -1.1748 -0.3484 9 8 7.6884 -1.1776 -0.4621 10 6 8.2457 -0.1692 -1.1621 11 1 7.6291 0.6362 -1.5329 12 6 9.6104 -0.1661 -1.4060 13 7 10.3618 -1.1470 -0.9538 14 14 10.3829 1.2315 -2.3753 15 1 9.3303 2.2027 -2.7677 16 1 11.3988 1.9147 -1.5348 17 1 11.0335 0.6879 -3.5944 18 6 5.6876 -2.2419 0.2605 19 6 4.3125 -2.2368 0.3807 20 6 3.6102 -3.3917 1.0470 21 1 -0.3633 -0.0001 1.0277 22 1 -0.3633 0.8900 -0.5138 23 1 -0.3634 -0.8900 -0.5138 24 1 1.6992 -2.0053 0.0803 25 1 3.6509 0.7252 -1.1179 26 1 6.1020 0.7200 -1.3242 27 1 11.3166 -1.1451 -1.1248 28 1 6.2601 -3.0735 0.6439 29 1 3.3639 -4.1467 0.3004 30 1 4.2638 -3.8275 1.8026 31 1 2.6946 -3.0362 1.5198 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000217371309.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:38:36 Heat of formation + Delta-G solvation = -64.067249 kcal Electronic energy + Delta-G solvation = -15963.618425 eV Core-core repulsion = 13209.834776 eV Total energy + Delta-G solvation = -2753.783649 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.100 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.58439 -40.29431 -38.39724 -35.43807 -34.21156 -33.34953 -31.36876 -29.41860 -27.51396 -27.04561 -23.93671 -22.45681 -21.36364 -19.81346 -18.89461 -18.07450 -17.82553 -16.58559 -16.25231 -15.92377 -15.56413 -15.33516 -15.02273 -14.60981 -14.34513 -14.01772 -13.65083 -13.50064 -13.21293 -13.07456 -12.88211 -12.69380 -12.61448 -12.33926 -12.11826 -11.43800 -11.22681 -10.77960 -10.49233 -9.66301 -8.54007 -8.47906 -6.15103 0.45432 0.53567 1.33697 1.40317 1.51908 1.70169 2.16615 2.25623 2.79364 3.12070 3.46124 3.84671 4.00829 4.10339 4.36419 4.49690 4.58481 4.59594 4.70335 4.78726 4.86811 5.00584 5.04424 5.16176 5.24794 5.39753 5.51771 5.59692 5.69476 6.01073 6.17148 6.59249 6.96361 7.26371 7.75935 8.74826 Molecular weight = 235.10amu Principal moments of inertia in cm(-1) A = 0.037077 B = 0.005994 C = 0.005213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.995678 B = 4670.037946 C = 5369.626208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.493 3.507 3 O -0.586 6.586 4 N -0.646 5.646 5 C 0.063 3.937 6 C -0.087 4.087 7 C -0.233 4.233 8 C 0.106 3.894 9 O -0.228 6.228 10 C -0.414 4.414 11 H 0.095 0.905 12 C -0.020 4.020 13 N -0.918 5.918 14 Si 1.018 2.982 15 H -0.257 1.257 16 H -0.266 1.266 17 H -0.265 1.265 18 C -0.183 4.183 19 C -0.060 4.060 20 C -0.105 4.105 21 H 0.116 0.884 22 H 0.095 0.905 23 H 0.114 0.886 24 H 0.427 0.573 25 H 0.132 0.868 26 H 0.115 0.885 27 H 0.273 0.727 28 H 0.126 0.874 29 H 0.093 0.907 30 H 0.075 0.925 31 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.662 -2.863 1.405 19.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.284 3.716 3 O -0.467 6.467 4 N -0.293 5.293 5 C -0.031 4.031 6 C -0.107 4.107 7 C -0.253 4.253 8 C 0.055 3.945 9 O -0.135 6.135 10 C -0.491 4.491 11 H 0.113 0.887 12 C -0.218 4.218 13 N -0.556 5.556 14 Si 0.837 3.163 15 H -0.181 1.181 16 H -0.191 1.191 17 H -0.189 1.189 18 C -0.202 4.202 19 C -0.063 4.063 20 C -0.162 4.162 21 H 0.134 0.866 22 H 0.114 0.886 23 H 0.133 0.867 24 H 0.266 0.734 25 H 0.149 0.851 26 H 0.133 0.867 27 H 0.082 0.918 28 H 0.144 0.856 29 H 0.112 0.888 30 H 0.094 0.906 31 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -18.955 -2.352 1.485 19.157 hybrid contribution 0.866 0.425 -0.416 1.051 sum -18.088 -1.927 1.069 18.222 Atomic orbital electron populations 1.21906 0.86262 1.06720 1.06699 1.22060 0.92888 0.82411 0.74204 1.90695 1.71846 1.33456 1.50674 1.43401 1.03799 1.10569 1.71560 1.17309 0.84094 0.97167 1.04578 1.21060 0.93046 0.98827 0.97799 1.21093 0.94704 1.00472 1.09056 1.19892 0.84194 0.94806 0.95568 1.83930 1.15748 1.47745 1.66053 1.21800 0.92705 1.01442 1.33113 0.88728 1.26535 0.95310 1.01423 0.98507 1.70183 1.06555 1.33456 1.45437 0.84550 0.78295 0.76030 0.77441 1.18087 1.19104 1.18934 1.20188 0.94118 0.98342 1.07596 1.19625 0.91481 0.97149 0.98036 1.20803 1.00471 0.94327 1.00581 0.86582 0.88624 0.86711 0.73352 0.85051 0.86737 0.91750 0.85632 0.88813 0.90643 0.89461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.76 10.31 71.23 0.73 -1.03 16 2 C 0.49 12.18 7.74 87.65 0.68 12.86 16 3 O -0.59 -21.38 14.26 -3.07 -0.04 -21.43 16 4 N -0.65 -15.21 4.97 -303.37 -1.51 -16.72 16 5 C 0.06 2.18 6.41 38.16 0.24 2.42 16 6 C -0.09 -3.70 8.71 22.38 0.19 -3.51 16 7 C -0.23 -11.49 9.16 22.37 0.20 -11.28 16 8 C 0.11 5.57 6.65 22.59 0.15 5.72 16 9 O -0.23 -14.21 9.75 -22.88 -0.22 -14.43 16 10 C -0.41 -25.24 9.48 67.91 0.64 -24.59 16 11 H 0.10 5.45 5.19 -2.91 -0.02 5.43 16 12 C -0.02 -1.18 5.49 84.82 0.47 -0.72 16 13 N -0.92 -57.27 13.67 21.61 0.30 -56.98 16 14 Si 1.02 44.56 29.55 68.60 2.03 46.59 16 15 H -0.26 -10.68 7.11 99.48 0.71 -9.97 16 16 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 17 H -0.26 -10.96 7.11 99.48 0.71 -10.26 16 18 C -0.18 -7.91 9.64 22.38 0.22 -7.69 16 19 C -0.06 -2.03 5.89 -19.76 -0.12 -2.15 16 20 C -0.11 -2.19 9.44 71.24 0.67 -1.51 16 21 H 0.12 0.86 8.14 -2.38 -0.02 0.84 16 22 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 23 H 0.11 0.53 8.14 -2.39 -0.02 0.51 16 24 H 0.43 5.92 7.40 -92.71 -0.69 5.23 16 25 H 0.13 5.58 5.78 -2.91 -0.02 5.57 16 26 H 0.11 5.82 5.63 -2.91 -0.02 5.80 16 27 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 28 H 0.13 5.20 8.06 -2.91 -0.02 5.18 16 29 H 0.09 1.54 8.14 -2.38 -0.02 1.52 16 30 H 0.07 1.54 8.09 -2.39 -0.02 1.52 16 31 H 0.09 1.32 6.98 -2.39 -0.02 1.30 16 Total: -1.00 -81.44 270.48 5.12 -76.32 By element: Atomic # 1 Polarization: 17.65 SS G_CDS: 0.48 Total: 18.12 kcal Atomic # 6 Polarization: -35.56 SS G_CDS: 4.09 Total: -31.47 kcal Atomic # 7 Polarization: -72.49 SS G_CDS: -1.21 Total: -73.70 kcal Atomic # 8 Polarization: -35.59 SS G_CDS: -0.27 Total: -35.86 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.59 kcal Total: -81.44 5.12 -76.32 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000217371309.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.256 kcal (2) G-P(sol) polarization free energy of solvation -81.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.323 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds