Wall clock time and date at job start Mon Mar 30 2020 17:38:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.37715 * 119.96181 * 2 1 4 4 C 1.39715 * 119.91562 * 179.97438 * 3 2 1 5 5 C 1.47599 * 120.08989 * 179.97438 * 4 3 2 6 6 O 1.21580 * 120.00167 * 0.02562 * 5 4 3 7 7 N 1.34776 * 120.00052 * 179.97438 * 5 4 3 8 8 C 1.46498 * 120.00055 * 180.02562 * 7 5 4 9 9 C 1.50703 * 109.46971 * 179.97438 * 8 7 5 10 10 H 1.08001 * 119.99939 * 359.97438 * 9 8 7 11 11 C 1.37884 * 119.99816 * 180.02562 * 9 8 7 12 12 N 1.31511 * 119.99495 * 179.97438 * 11 9 8 13 13 Si 1.86795 * 119.99935 * 359.97438 * 11 9 8 14 14 H 1.48503 * 109.47094 * 90.00513 * 13 11 9 15 15 H 1.48507 * 109.46991 * 210.00348 * 13 11 9 16 16 H 1.48504 * 109.47093 * 330.00154 * 13 11 9 17 17 C 1.39758 * 119.81785 * 359.72414 * 4 3 2 18 18 C 1.37674 * 119.91501 * 0.54839 * 17 4 3 19 19 C 1.38979 * 119.95149 * 179.97438 * 2 1 3 20 20 O 1.35711 * 119.91121 * 359.97438 * 19 2 1 21 21 H 1.08999 * 109.47198 * 270.02767 * 1 2 3 22 22 H 1.09002 * 109.47072 * 30.02062 * 1 2 3 23 23 H 1.08989 * 109.47641 * 150.02681 * 1 2 3 24 24 H 1.08006 * 120.04491 * 359.94844 * 3 2 1 25 25 H 0.96998 * 119.99952 * 359.97438 * 7 5 4 26 26 H 1.08999 * 109.47043 * 299.99966 * 8 7 5 27 27 H 1.08997 * 109.47476 * 59.99979 * 8 7 5 28 28 H 0.97005 * 119.99484 * 179.97438 * 12 11 9 29 29 H 1.07998 * 120.03934 * 180.29374 * 17 4 3 30 30 H 1.08002 * 119.96021 * 179.73319 * 18 17 4 31 31 H 0.96694 * 114.00720 * 270.02117 * 20 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1948 1.1931 0.0000 4 6 3.5919 1.1920 0.0005 5 6 4.3330 2.4685 0.0000 6 8 3.7276 3.5228 -0.0005 7 7 5.6807 2.4653 0.0010 8 6 6.4162 3.7322 0.0010 9 6 7.8972 3.4533 0.0029 10 1 8.2547 2.4342 0.0044 11 6 8.7957 4.4992 0.0038 12 7 10.0881 4.2557 0.0060 13 14 8.1772 6.2618 0.0019 14 1 8.0112 6.7296 1.4015 15 1 9.1585 7.1300 -0.6971 16 1 6.8703 6.3270 -0.7002 17 6 4.2859 -0.0211 0.0069 18 6 3.5911 -1.2096 0.0012 19 6 2.2009 -1.2042 0.0005 20 8 1.5195 -2.3778 0.0016 21 1 -0.3633 0.0005 1.0276 22 1 -0.3633 0.8898 -0.5142 23 1 -0.3634 -0.8901 -0.5133 24 1 1.6549 2.1285 -0.0008 25 1 6.1637 1.6241 0.0025 26 1 6.1549 4.3040 -0.8894 27 1 6.1536 4.3049 0.8905 28 1 10.7202 4.9915 0.0062 29 1 5.3658 -0.0261 0.0122 30 1 4.1266 -2.1475 0.0018 31 1 1.3220 -2.7173 0.8852 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000226406460.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:38:44 Heat of formation + Delta-G solvation = -88.937878 kcal Electronic energy + Delta-G solvation = -15624.831286 eV Core-core repulsion = 12869.969166 eV Total energy + Delta-G solvation = -2754.862120 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.100 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.37314 -40.08134 -37.44857 -36.28087 -34.56551 -33.68400 -31.47236 -29.84142 -27.72260 -25.20730 -23.47748 -23.05682 -21.38542 -19.40105 -19.26954 -18.16531 -17.45882 -16.56775 -16.36974 -16.22974 -16.12182 -15.36385 -14.87833 -14.50874 -14.45330 -14.16088 -14.04997 -13.59934 -13.15365 -12.96727 -12.84466 -12.76440 -12.66092 -11.94559 -11.68588 -11.41378 -11.03310 -10.93319 -10.10674 -9.91020 -9.55981 -8.41335 -6.48827 -0.28538 0.28120 1.32536 1.34735 1.47417 1.75789 2.27065 2.34460 2.71735 2.94310 3.20410 3.75597 3.78392 3.87280 4.18768 4.33264 4.56460 4.74311 4.77994 4.82537 4.90464 4.98509 5.17201 5.19955 5.25029 5.31222 5.40901 5.42150 5.73683 6.06161 6.50653 6.74094 6.82777 7.11635 7.28483 8.73305 Molecular weight = 235.10amu Principal moments of inertia in cm(-1) A = 0.051008 B = 0.005034 C = 0.004599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 548.800929 B = 5560.815709 C = 6086.611217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.125 4.125 3 C -0.058 4.058 4 C -0.155 4.155 5 C 0.543 3.457 6 O -0.594 6.594 7 N -0.698 5.698 8 C 0.230 3.770 9 C -0.549 4.549 10 H 0.061 0.939 11 C 0.029 3.971 12 N -0.929 5.929 13 Si 0.937 3.063 14 H -0.264 1.264 15 H -0.272 1.272 16 H -0.261 1.261 17 C -0.074 4.074 18 C -0.146 4.146 19 C 0.136 3.864 20 O -0.497 6.497 21 H 0.086 0.914 22 H 0.069 0.931 23 H 0.082 0.918 24 H 0.130 0.870 25 H 0.408 0.592 26 H 0.015 0.985 27 H 0.015 0.985 28 H 0.273 0.727 29 H 0.142 0.858 30 H 0.161 0.839 31 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.366 -13.013 1.846 21.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.126 4.126 3 C -0.077 4.077 4 C -0.158 4.158 5 C 0.331 3.669 6 O -0.478 6.478 7 N -0.347 5.347 8 C 0.107 3.893 9 C -0.587 4.587 10 H 0.079 0.921 11 C -0.172 4.172 12 N -0.568 5.568 13 Si 0.760 3.240 14 H -0.189 1.189 15 H -0.197 1.197 16 H -0.186 1.186 17 C -0.093 4.093 18 C -0.164 4.164 19 C 0.090 3.910 20 O -0.311 6.311 21 H 0.105 0.895 22 H 0.088 0.912 23 H 0.100 0.900 24 H 0.147 0.853 25 H 0.245 0.755 26 H 0.033 0.967 27 H 0.033 0.967 28 H 0.082 0.918 29 H 0.160 0.840 30 H 0.178 0.822 31 H 0.276 0.724 Dipole moment (debyes) X Y Z Total from point charges -17.531 -12.138 1.252 21.359 hybrid contribution 0.635 0.643 0.463 1.015 sum -16.896 -11.496 1.715 20.507 Atomic orbital electron populations 1.20732 0.88293 1.03804 1.03617 1.20403 0.98422 0.91537 1.02196 1.21087 0.92176 0.98692 0.95750 1.19923 0.94782 0.92321 1.08782 1.18818 0.82395 0.89543 0.76097 1.90686 1.69263 1.34507 1.53295 1.45967 1.05574 1.10893 1.72305 1.19174 0.90722 0.83466 0.95956 1.21259 0.89358 0.95082 1.52977 0.92122 1.25576 0.94725 1.03434 0.93446 1.69976 1.02228 1.34113 1.50475 0.85865 0.78924 0.79629 0.79536 1.18860 1.19675 1.18564 1.21383 1.00858 0.90854 0.96230 1.21578 0.93584 0.99097 1.02153 1.18550 0.89824 0.85304 0.97304 1.84671 1.75764 1.35022 1.35619 0.89544 0.91165 0.89964 0.85257 0.75497 0.96705 0.96716 0.91762 0.83986 0.82171 0.72438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.66 9.78 71.24 0.70 -0.96 16 2 C -0.12 -2.68 5.89 -19.81 -0.12 -2.80 16 3 C -0.06 -1.61 9.23 22.50 0.21 -1.41 16 4 C -0.16 -4.87 5.88 -20.08 -0.12 -4.98 16 5 C 0.54 22.11 7.76 86.71 0.67 22.79 16 6 O -0.59 -28.43 16.34 -3.97 -0.06 -28.49 16 7 N -0.70 -29.39 5.50 -469.95 -2.58 -31.97 16 8 C 0.23 11.57 4.50 85.63 0.38 11.96 16 9 C -0.55 -30.55 9.83 25.60 0.25 -30.30 16 10 H 0.06 3.52 7.84 -2.91 -0.02 3.50 16 11 C 0.03 1.63 5.47 84.66 0.46 2.10 16 12 N -0.93 -55.48 13.96 21.45 0.30 -55.18 16 13 Si 0.94 44.21 27.47 68.60 1.88 46.10 16 14 H -0.26 -12.01 7.11 99.48 0.71 -11.30 16 15 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 16 H -0.26 -12.29 6.54 99.48 0.65 -11.64 16 17 C -0.07 -1.86 9.53 22.50 0.21 -1.65 16 18 C -0.15 -2.90 9.97 22.32 0.22 -2.68 16 19 C 0.14 2.62 6.68 22.64 0.15 2.77 16 20 O -0.50 -7.03 12.52 -90.32 -1.13 -8.16 16 21 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 22 H 0.07 1.08 8.08 -2.39 -0.02 1.06 16 23 H 0.08 1.13 7.52 -2.39 -0.02 1.11 16 24 H 0.13 3.76 7.64 -2.91 -0.02 3.74 16 25 H 0.41 14.95 6.34 -92.71 -0.59 14.36 16 26 H 0.02 0.79 7.20 -2.39 -0.02 0.77 16 27 H 0.01 0.77 7.57 -2.39 -0.02 0.75 16 28 H 0.27 15.16 8.31 -92.70 -0.77 14.39 16 29 H 0.14 3.22 6.40 -2.91 -0.02 3.21 16 30 H 0.16 2.32 8.06 -2.91 -0.02 2.30 16 31 H 0.41 1.73 9.06 -74.06 -0.67 1.06 16 Total: -1.00 -71.39 273.23 1.29 -70.09 By element: Atomic # 1 Polarization: 12.92 SS G_CDS: -0.14 Total: 12.78 kcal Atomic # 6 Polarization: -8.20 SS G_CDS: 3.03 Total: -5.17 kcal Atomic # 7 Polarization: -84.86 SS G_CDS: -2.28 Total: -87.15 kcal Atomic # 8 Polarization: -35.45 SS G_CDS: -1.20 Total: -36.65 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 1.88 Total: 46.10 kcal Total: -71.39 1.29 -70.09 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226406460.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.844 kcal (2) G-P(sol) polarization free energy of solvation -71.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds