Wall clock time and date at job start Mon Mar 30 2020 17:36:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38401 * 120.24644 * 2 1 4 4 N 1.31831 * 121.21784 * 180.02562 * 3 2 1 5 5 C 1.32452 * 121.77500 * 359.97438 * 4 3 2 6 6 N 1.38380 * 119.82435 * 179.97438 * 5 4 3 7 7 C 1.46504 * 119.99631 * 86.17896 * 6 5 4 8 8 C 1.36875 * 120.00124 * 266.18155 * 6 5 4 9 9 H 1.08000 * 119.99759 * 2.06628 * 8 6 5 10 10 C 1.38825 * 120.00377 * 182.07753 * 8 6 5 11 11 N 1.31557 * 119.99457 * 351.85706 * 10 8 6 12 12 Si 1.86793 * 120.00351 * 171.86310 * 10 8 6 13 13 H 1.48510 * 109.47288 * 89.99646 * 12 10 8 14 14 H 1.48503 * 109.47199 * 209.99188 * 12 10 8 15 15 H 1.48493 * 109.47324 * 329.99660 * 12 10 8 16 16 C 1.40598 * 120.35072 * 359.97237 * 5 4 3 17 17 C 1.47369 * 120.60755 * 180.02562 * 16 5 4 18 18 N 1.29466 * 120.00122 * 5.10471 * 17 16 5 19 19 O 1.41605 * 120.00220 * 184.97106 * 18 17 16 20 20 C 1.38422 * 120.24690 * 179.97438 * 2 1 3 21 21 H 1.08999 * 109.47092 * 90.00500 * 1 2 3 22 22 H 1.09001 * 109.47508 * 210.00149 * 1 2 3 23 23 H 1.09005 * 109.47239 * 330.00156 * 1 2 3 24 24 H 1.07993 * 119.39301 * 0.27415 * 3 2 1 25 25 H 1.08999 * 109.47530 * 0.77214 * 7 6 5 26 26 H 1.08996 * 109.46989 * 120.78052 * 7 6 5 27 27 H 1.09009 * 109.46727 * 240.77519 * 7 6 5 28 28 H 0.96999 * 119.99727 * 180.02562 * 11 10 8 29 29 H 1.07999 * 119.99815 * 185.09782 * 17 16 5 30 30 H 0.96699 * 113.99948 * 179.97438 * 19 18 17 31 31 H 1.07995 * 120.81253 * 359.97438 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2041 1.1956 0.0000 4 7 3.5222 1.2179 -0.0005 5 6 4.2387 0.1039 -0.0005 6 7 5.6207 0.1745 -0.0016 7 6 6.3488 0.2968 1.2638 8 6 6.3073 0.1300 -1.1848 9 1 5.7693 0.0735 -2.1196 10 6 7.6953 0.1572 -1.1834 11 7 8.3475 0.3865 -0.0641 12 14 8.6368 -0.1313 -2.7707 13 1 8.8595 1.1666 -3.4572 14 1 9.9467 -0.7591 -2.4622 15 1 7.8528 -1.0307 -3.6548 16 6 3.6025 -1.1499 0.0006 17 6 4.3941 -2.3929 0.0011 18 7 5.6838 -2.3390 0.1003 19 8 6.4522 -3.5238 -0.0048 20 6 2.2042 -1.1958 0.0005 21 1 -0.3633 -0.0001 -1.0277 22 1 -0.3634 -0.8900 0.5138 23 1 -0.3634 0.8900 0.5138 24 1 1.6583 2.1274 0.0045 25 1 5.6400 0.3025 2.0918 26 1 7.0299 -0.5470 1.3741 27 1 6.9184 1.2263 1.2668 28 1 9.3173 0.4059 -0.0632 29 1 3.8983 -3.3489 -0.0811 30 1 7.4050 -3.3836 0.0817 31 1 1.6816 -2.1409 0.0014 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166799708.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:36:03 Heat of formation + Delta-G solvation = 92.475016 kcal Electronic energy + Delta-G solvation = -16678.839848 eV Core-core repulsion = 13964.137132 eV Total energy + Delta-G solvation = -2714.702716 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.61296 -36.27337 -35.54180 -33.18929 -32.79749 -30.74222 -29.77256 -26.43084 -25.92903 -23.55171 -23.20832 -21.12101 -19.39405 -17.34361 -17.21075 -15.95767 -15.65149 -14.67919 -14.49635 -13.93536 -13.89206 -13.37703 -13.02465 -12.79951 -12.68242 -12.33831 -11.98874 -11.83242 -11.56769 -11.09730 -10.78911 -10.46099 -10.20906 -10.07187 -9.93112 -9.12927 -8.84451 -8.72769 -8.50677 -7.70306 -7.08077 -5.75157 -3.12956 1.35693 1.85157 3.16798 3.35085 3.40611 3.43120 3.78355 4.34806 4.52590 4.89727 5.18678 5.21370 5.32413 5.45548 5.46664 5.58611 5.74469 5.95053 6.10400 6.24294 6.36582 6.59407 6.73097 6.77031 7.19296 7.38616 7.67445 7.69514 7.91852 8.32678 8.48039 8.84186 9.14810 9.84046 10.18033 11.22899 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.028223 B = 0.009092 C = 0.008064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 991.854612 B = 3078.869312 C = 3471.524969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C -0.181 4.181 3 C 0.116 3.884 4 N -0.501 5.501 5 C 0.422 3.578 6 N -0.531 5.531 7 C 0.180 3.820 8 C -0.219 4.219 9 H 0.071 0.929 10 C 0.010 3.990 11 N -0.900 5.900 12 Si 0.909 3.091 13 H -0.287 1.287 14 H -0.287 1.287 15 H -0.281 1.281 16 C -0.118 4.118 17 C 0.101 3.899 18 N -0.230 5.230 19 O -0.437 6.437 20 C -0.050 4.050 21 H 0.063 0.937 22 H 0.060 0.940 23 H 0.063 0.937 24 H 0.142 0.858 25 H -0.013 1.013 26 H 0.058 0.942 27 H 0.049 0.951 28 H 0.253 0.747 29 H 0.105 0.895 30 H 0.404 0.596 31 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.911 -3.668 1.346 11.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.184 4.184 3 C -0.046 4.046 4 N -0.212 5.212 5 C 0.190 3.810 6 N -0.248 5.248 7 C 0.038 3.962 8 C -0.347 4.347 9 H 0.089 0.911 10 C -0.188 4.188 11 N -0.545 5.545 12 Si 0.738 3.262 13 H -0.214 1.214 14 H -0.213 1.213 15 H -0.207 1.207 16 C -0.127 4.127 17 C -0.110 4.110 18 N 0.029 4.971 19 O -0.345 6.345 20 C -0.079 4.079 21 H 0.082 0.918 22 H 0.079 0.921 23 H 0.082 0.918 24 H 0.160 0.840 25 H 0.006 0.994 26 H 0.077 0.923 27 H 0.067 0.933 28 H 0.064 0.936 29 H 0.122 0.878 30 H 0.253 0.747 31 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -9.856 -2.627 1.449 10.303 hybrid contribution 0.140 -1.513 -0.995 1.816 sum -9.716 -4.139 0.454 10.571 Atomic orbital electron populations 1.20563 0.90941 1.02235 1.01752 1.20562 0.96734 0.94064 1.07056 1.22519 0.89989 0.96663 0.95419 1.68030 1.07108 1.33493 1.12598 1.18445 0.87585 0.86306 0.88656 1.41205 0.96322 1.81865 1.05391 1.21128 0.91704 1.02436 0.80965 1.19044 0.88781 1.42851 0.84015 0.91138 1.24770 0.96133 1.00685 0.97211 1.70222 1.06936 1.52824 1.24558 0.86187 0.79343 0.78059 0.82584 1.21364 1.21309 1.20676 1.19918 0.92402 0.93066 1.07301 1.23801 0.91724 0.95774 0.99654 1.77735 1.06607 1.04441 1.08322 1.88210 1.23867 1.28779 1.93668 1.21302 0.92165 0.97828 0.96586 0.91790 0.92069 0.91814 0.84043 0.99397 0.92317 0.93252 0.93627 0.87779 0.74740 0.85595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 39. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.00 10.03 36.00 0.36 -0.64 16 2 C -0.18 -2.68 5.89 -104.50 -0.62 -3.29 16 3 C 0.12 1.99 10.84 -17.49 -0.19 1.80 16 4 N -0.50 -11.08 10.38 -12.15 -0.13 -11.21 16 5 C 0.42 9.88 5.94 -155.02 -0.92 8.95 16 6 N -0.53 -13.85 1.62 -122.16 -0.20 -14.05 16 7 C 0.18 4.67 8.33 59.85 0.50 5.17 16 8 C -0.22 -6.06 8.61 -15.08 -0.13 -6.19 16 9 H 0.07 1.99 7.84 -52.49 -0.41 1.58 16 10 C 0.01 0.27 5.43 -17.45 -0.09 0.17 16 11 N -0.90 -25.09 9.47 55.49 0.53 -24.57 16 12 Si 0.91 21.78 29.56 -169.99 -5.02 16.76 16 13 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 14 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 15 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 16 C -0.12 -2.38 5.91 -104.67 -0.62 -3.00 16 17 C 0.10 2.02 10.92 -14.83 -0.16 1.86 16 18 N -0.23 -5.19 8.06 32.09 0.26 -4.93 16 19 O -0.44 -8.82 14.95 -11.47 -0.17 -9.00 16 20 C -0.05 -0.80 9.60 -38.89 -0.37 -1.17 16 21 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 22 H 0.06 0.55 8.09 -51.93 -0.42 0.13 16 23 H 0.06 0.57 8.09 -51.93 -0.42 0.15 16 24 H 0.14 1.96 8.06 -52.49 -0.42 1.54 16 25 H -0.01 -0.31 7.90 -51.93 -0.41 -0.72 16 26 H 0.06 1.57 6.68 -51.93 -0.35 1.22 16 27 H 0.05 1.38 6.98 -51.92 -0.36 1.01 16 28 H 0.25 6.83 8.31 -40.82 -0.34 6.49 16 29 H 0.10 1.76 8.06 -52.49 -0.42 1.34 16 30 H 0.40 7.03 9.28 45.56 0.42 7.46 16 31 H 0.13 1.55 8.06 -52.49 -0.42 1.13 16 LS Contribution 272.34 15.07 4.10 4.10 Total: -1.00 -31.33 272.34 -5.65 -36.98 By element: Atomic # 1 Polarization: 5.01 SS G_CDS: -2.77 Total: 2.24 kcal Atomic # 6 Polarization: 5.92 SS G_CDS: -2.24 Total: 3.68 kcal Atomic # 7 Polarization: -55.22 SS G_CDS: 0.46 Total: -54.76 kcal Atomic # 8 Polarization: -8.82 SS G_CDS: -0.17 Total: -9.00 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -31.33 -5.65 -36.98 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166799708.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.455 kcal (2) G-P(sol) polarization free energy of solvation -31.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.980 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds