Wall clock time and date at job start Mon Mar 30 2020 17:37:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.47193 * 179.97438 * 2 1 4 4 C 1.53004 * 109.47067 * 107.23070 * 3 2 1 5 5 C 1.53000 * 109.47047 * 179.97438 * 4 3 2 6 6 H 1.08992 * 109.78387 * 54.52096 * 5 4 3 7 7 C 1.53236 * 109.62269 * 174.99802 * 5 4 3 8 8 C 1.52953 * 109.41342 * 174.34907 * 7 5 4 9 9 C 1.52963 * 109.81780 * 296.39048 * 8 7 5 10 10 C 1.53236 * 109.40035 * 63.60102 * 9 8 7 11 11 H 1.08999 * 109.62901 * 65.09097 * 10 9 8 12 12 C 1.53003 * 109.62175 * 185.46800 * 10 9 8 13 13 C 1.50697 * 109.46732 * 184.99921 * 12 10 9 14 14 H 1.07996 * 120.00461 * 0.02562 * 13 12 10 15 15 C 1.37884 * 120.00180 * 179.97438 * 13 12 10 16 16 N 1.31513 * 119.99363 * 0.02562 * 15 13 12 17 17 Si 1.86795 * 120.00385 * 179.97438 * 15 13 12 18 18 H 1.48504 * 109.46747 * 60.00261 * 17 15 13 19 19 H 1.48498 * 109.47440 * 179.97438 * 17 15 13 20 20 H 1.48498 * 109.47215 * 300.00621 * 17 15 13 21 21 C 1.51268 * 108.53762 * 305.37197 * 10 9 8 22 22 O 1.20757 * 120.84686 * 231.37431 * 21 10 9 23 23 H 1.08996 * 109.47683 * 347.22585 * 3 2 1 24 24 H 1.09001 * 109.46545 * 227.21999 * 3 2 1 25 25 H 1.08996 * 109.47265 * 59.99259 * 4 3 2 26 26 H 1.08999 * 109.46816 * 299.99394 * 4 3 2 27 27 H 1.09002 * 109.48487 * 54.35983 * 7 5 4 28 28 H 1.08999 * 109.47961 * 294.33234 * 7 5 4 29 29 H 1.08995 * 109.42108 * 56.49837 * 8 7 5 30 30 H 1.09000 * 109.41504 * 176.28903 * 8 7 5 31 31 H 1.08994 * 109.48627 * 183.57838 * 9 8 7 32 32 H 1.08995 * 109.48314 * 303.62481 * 9 8 7 33 33 H 1.08996 * 109.47021 * 304.99447 * 12 10 9 34 34 H 1.08997 * 109.47233 * 65.00049 * 12 10 9 35 35 H 0.97001 * 119.99990 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6079 0.0007 0.0000 4 6 3.1177 0.4282 -1.3778 5 6 4.6477 0.4295 -1.3776 6 1 5.0174 -0.5442 -1.0563 7 6 5.1623 0.7354 -2.7882 8 6 6.6851 0.8749 -2.7548 9 6 7.0774 2.0700 -1.8844 10 6 6.6352 1.8144 -0.4396 11 1 7.1889 0.9689 -0.0314 12 6 6.9018 3.0604 0.4073 13 6 6.5808 2.7652 1.8498 14 1 6.2229 1.7868 2.1342 15 6 6.7450 3.7441 2.8070 16 7 7.1813 4.9355 2.4608 17 14 6.3464 3.3785 4.5949 18 1 7.2000 2.2617 5.0739 19 1 6.6064 4.5874 5.4172 20 1 4.9167 2.9955 4.7150 21 6 5.1553 1.5012 -0.4379 22 8 4.3982 2.0917 0.2944 23 1 2.9718 -1.0013 0.2272 24 1 2.9709 0.6988 0.7543 25 1 2.7539 1.4302 -1.6050 26 1 2.7548 -0.2699 -2.1321 27 1 4.7196 1.6663 -3.1427 28 1 4.8863 -0.0773 -3.4600 29 1 7.1232 -0.0336 -2.3416 30 1 7.0573 1.0270 -3.7679 31 1 8.1588 2.2029 -1.9154 32 1 6.5894 2.9692 -2.2602 33 1 7.9510 3.3421 0.3189 34 1 6.2747 3.8797 0.0559 35 1 7.2965 5.6243 3.1340 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000002162345.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:37:34 Heat of formation + Delta-G solvation = -44.221862 kcal Electronic energy + Delta-G solvation = -16639.825062 eV Core-core repulsion = 14022.735068 eV Total energy + Delta-G solvation = -2617.089994 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.131 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.87503 -36.73557 -35.95969 -34.46448 -32.75912 -30.84977 -28.73310 -26.47290 -24.05042 -23.02874 -20.88832 -20.42363 -18.51853 -17.28173 -16.25522 -16.09647 -15.26013 -14.47654 -14.33737 -14.24089 -14.06143 -13.32058 -13.03512 -12.90148 -12.59743 -12.36953 -12.07286 -11.83714 -11.68107 -11.31772 -11.10164 -11.03462 -10.90325 -10.79642 -10.51850 -10.48651 -10.30032 -10.20872 -9.40063 -9.00856 -8.46959 -8.21233 -5.91660 -3.90427 2.72095 2.85764 2.91503 3.38606 3.43113 3.46179 4.06588 4.47570 4.53578 4.83826 4.89227 5.10797 5.17136 5.26103 5.44700 5.45836 5.51342 5.60802 5.67003 5.85091 5.89914 5.93296 6.07472 6.12368 6.20379 6.25509 6.29233 6.54964 6.67991 6.92030 7.63702 7.66399 7.77956 8.03796 8.35158 8.46346 9.10360 9.70886 11.20389 Molecular weight = 235.13amu Principal moments of inertia in cm(-1) A = 0.018130 B = 0.008680 C = 0.006177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1543.994687 B = 3225.057855 C = 4531.575839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.456 5.456 2 C 0.218 3.782 3 C -0.043 4.043 4 C -0.099 4.099 5 C -0.142 4.142 6 H 0.102 0.898 7 C -0.105 4.105 8 C -0.123 4.123 9 C -0.111 4.111 10 C -0.129 4.129 11 H 0.089 0.911 12 C 0.035 3.965 13 C -0.498 4.498 14 H 0.051 0.949 15 C 0.056 3.944 16 N -0.900 5.900 17 Si 0.888 3.112 18 H -0.279 1.279 19 H -0.289 1.289 20 H -0.277 1.277 21 C 0.360 3.640 22 O -0.417 6.417 23 H 0.104 0.896 24 H 0.132 0.868 25 H 0.075 0.925 26 H 0.071 0.929 27 H 0.065 0.935 28 H 0.067 0.933 29 H 0.065 0.935 30 H 0.062 0.938 31 H 0.068 0.932 32 H 0.061 0.939 33 H 0.021 0.979 34 H 0.020 0.980 35 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.008 -10.586 -10.717 15.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.133 5.133 2 C -0.099 4.099 3 C -0.082 4.082 4 C -0.138 4.138 5 C -0.161 4.161 6 H 0.120 0.880 7 C -0.143 4.143 8 C -0.161 4.161 9 C -0.149 4.149 10 C -0.148 4.148 11 H 0.107 0.893 12 C -0.002 4.002 13 C -0.536 4.536 14 H 0.069 0.931 15 C -0.144 4.144 16 N -0.540 5.540 17 Si 0.716 3.284 18 H -0.204 1.204 19 H -0.215 1.215 20 H -0.203 1.203 21 C 0.232 3.768 22 O -0.287 6.287 23 H 0.122 0.878 24 H 0.149 0.851 25 H 0.093 0.907 26 H 0.089 0.911 27 H 0.084 0.916 28 H 0.086 0.914 29 H 0.083 0.917 30 H 0.081 0.919 31 H 0.086 0.914 32 H 0.080 0.920 33 H 0.039 0.961 34 H 0.038 0.962 35 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -3.092 -10.083 -10.234 14.696 hybrid contribution 0.313 -0.169 1.037 1.096 sum -2.780 -10.253 -9.197 14.051 Atomic orbital electron populations 1.81172 1.13229 1.09742 1.09202 1.29350 0.95392 0.92457 0.92677 1.19662 0.81295 1.05491 1.01786 1.21379 0.94496 1.02878 0.95008 1.22047 0.95184 1.01270 0.97589 0.88006 1.21516 0.96201 1.02055 0.94498 1.21590 0.95111 0.99399 0.99983 1.21625 1.01430 0.97586 0.94252 1.22006 0.93586 1.03235 0.95978 0.89288 1.19024 0.97041 0.90468 0.93695 1.21003 1.42809 0.97729 0.92066 0.93094 1.24928 0.95580 0.95152 0.98719 1.69937 1.47131 1.03274 1.33668 0.86727 0.78933 0.77452 0.85299 1.20443 1.21460 1.20266 1.24747 0.91722 0.80719 0.79593 1.90364 1.58923 1.45337 1.34083 0.87802 0.85066 0.90653 0.91051 0.91584 0.91447 0.91668 0.91942 0.91366 0.91993 0.96089 0.96161 0.93140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -7.46 18.54 42.15 0.78 -6.68 16 2 C 0.22 3.01 15.43 -20.76 -0.32 2.69 16 3 C -0.04 -0.49 5.46 -29.52 -0.16 -0.65 16 4 C -0.10 -1.06 4.33 -26.73 -0.12 -1.18 16 5 C -0.14 -1.60 2.47 -91.36 -0.23 -1.83 16 6 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 7 C -0.11 -1.04 5.23 -26.63 -0.14 -1.18 16 8 C -0.12 -1.28 5.81 -26.77 -0.16 -1.44 16 9 C -0.11 -1.58 5.23 -26.63 -0.14 -1.72 16 10 C -0.13 -2.32 2.41 -91.37 -0.22 -2.54 16 11 H 0.09 1.53 8.14 -51.93 -0.42 1.10 16 12 C 0.03 0.85 4.15 -27.88 -0.12 0.73 16 13 C -0.50 -13.68 7.69 -34.44 -0.26 -13.94 16 14 H 0.05 1.36 7.56 -52.49 -0.40 0.97 16 15 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 16 N -0.90 -27.13 13.29 55.43 0.74 -26.39 16 17 Si 0.89 22.01 29.54 -169.99 -5.02 16.99 16 18 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 19 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 20 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 21 C 0.36 6.04 6.03 -28.46 -0.17 5.87 16 22 O -0.42 -8.67 12.61 6.00 0.08 -8.60 16 23 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 24 H 0.13 1.85 5.78 -51.93 -0.30 1.55 16 25 H 0.07 0.92 8.09 -51.93 -0.42 0.50 16 26 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 27 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.02 0.55 8.09 -51.93 -0.42 0.13 16 35 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 292.38 15.07 4.41 4.41 Total: -1.00 -32.57 292.38 -6.47 -39.04 By element: Atomic # 1 Polarization: 0.20 SS G_CDS: -5.32 Total: -5.12 kcal Atomic # 6 Polarization: -11.52 SS G_CDS: -2.13 Total: -13.65 kcal Atomic # 7 Polarization: -34.59 SS G_CDS: 1.52 Total: -33.07 kcal Atomic # 8 Polarization: -8.67 SS G_CDS: 0.08 Total: -8.60 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -32.57 -6.47 -39.04 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000002162345.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.181 kcal (2) G-P(sol) polarization free energy of solvation -32.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds