Wall clock time and date at job start Mon Mar 30 2020 17:37:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.47193 * 179.97438 * 2 1 4 4 C 1.53004 * 109.47067 * 107.23070 * 3 2 1 5 5 C 1.53000 * 109.47047 * 179.97438 * 4 3 2 6 6 H 1.08992 * 109.78387 * 54.52096 * 5 4 3 7 7 C 1.53236 * 109.62269 * 174.99802 * 5 4 3 8 8 C 1.52953 * 109.41342 * 174.34907 * 7 5 4 9 9 C 1.52963 * 109.81780 * 296.39048 * 8 7 5 10 10 C 1.53236 * 109.40035 * 63.60102 * 9 8 7 11 11 H 1.08999 * 109.62901 * 65.09097 * 10 9 8 12 12 C 1.53003 * 109.62175 * 185.46800 * 10 9 8 13 13 C 1.50697 * 109.46732 * 184.99921 * 12 10 9 14 14 H 1.07996 * 120.00461 * 0.02562 * 13 12 10 15 15 C 1.37884 * 120.00180 * 179.97438 * 13 12 10 16 16 N 1.31513 * 119.99363 * 0.02562 * 15 13 12 17 17 Si 1.86795 * 120.00385 * 179.97438 * 15 13 12 18 18 H 1.48504 * 109.46747 * 60.00261 * 17 15 13 19 19 H 1.48498 * 109.47440 * 179.97438 * 17 15 13 20 20 H 1.48498 * 109.47215 * 300.00621 * 17 15 13 21 21 C 1.51268 * 108.53762 * 305.37197 * 10 9 8 22 22 O 1.20757 * 120.84686 * 231.37431 * 21 10 9 23 23 H 1.08996 * 109.47683 * 347.22585 * 3 2 1 24 24 H 1.09001 * 109.46545 * 227.21999 * 3 2 1 25 25 H 1.08996 * 109.47265 * 59.99259 * 4 3 2 26 26 H 1.08999 * 109.46816 * 299.99394 * 4 3 2 27 27 H 1.09002 * 109.48487 * 54.35983 * 7 5 4 28 28 H 1.08999 * 109.47961 * 294.33234 * 7 5 4 29 29 H 1.08995 * 109.42108 * 56.49837 * 8 7 5 30 30 H 1.09000 * 109.41504 * 176.28903 * 8 7 5 31 31 H 1.08994 * 109.48627 * 183.57838 * 9 8 7 32 32 H 1.08995 * 109.48314 * 303.62481 * 9 8 7 33 33 H 1.08996 * 109.47021 * 304.99447 * 12 10 9 34 34 H 1.08997 * 109.47233 * 65.00049 * 12 10 9 35 35 H 0.97001 * 119.99990 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6079 0.0007 0.0000 4 6 3.1177 0.4282 -1.3778 5 6 4.6477 0.4295 -1.3776 6 1 5.0174 -0.5442 -1.0563 7 6 5.1623 0.7354 -2.7882 8 6 6.6851 0.8749 -2.7548 9 6 7.0774 2.0700 -1.8844 10 6 6.6352 1.8144 -0.4396 11 1 7.1889 0.9689 -0.0314 12 6 6.9018 3.0604 0.4073 13 6 6.5808 2.7652 1.8498 14 1 6.2229 1.7868 2.1342 15 6 6.7450 3.7441 2.8070 16 7 7.1813 4.9355 2.4608 17 14 6.3464 3.3785 4.5949 18 1 7.2000 2.2617 5.0739 19 1 6.6064 4.5874 5.4172 20 1 4.9167 2.9955 4.7150 21 6 5.1553 1.5012 -0.4379 22 8 4.3982 2.0917 0.2944 23 1 2.9718 -1.0013 0.2272 24 1 2.9709 0.6988 0.7543 25 1 2.7539 1.4302 -1.6050 26 1 2.7548 -0.2699 -2.1321 27 1 4.7196 1.6663 -3.1427 28 1 4.8863 -0.0773 -3.4600 29 1 7.1232 -0.0336 -2.3416 30 1 7.0573 1.0270 -3.7679 31 1 8.1588 2.2029 -1.9154 32 1 6.5894 2.9692 -2.2602 33 1 7.9510 3.3421 0.3189 34 1 6.2747 3.8797 0.0559 35 1 7.2965 5.6243 3.1340 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000002162345.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:37:34 Heat of formation + Delta-G solvation = -63.689346 kcal Electronic energy + Delta-G solvation = -16640.669235 eV Core-core repulsion = 14022.735068 eV Total energy + Delta-G solvation = -2617.934167 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.131 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.11636 -37.87128 -37.14993 -35.86699 -34.50045 -32.30283 -29.88339 -28.13912 -25.13891 -24.72702 -21.92113 -21.71860 -19.74222 -18.37729 -18.27297 -17.24614 -16.63988 -16.36745 -15.45782 -15.34319 -15.11587 -14.73301 -14.19952 -14.03147 -13.88334 -13.73461 -13.57535 -13.14891 -13.04467 -12.81340 -12.64580 -12.51114 -12.24904 -12.07804 -11.88368 -11.78322 -11.45117 -11.34128 -11.23906 -10.79974 -10.51799 -9.70128 -8.12417 -6.17173 1.38190 1.42265 1.44416 1.48374 1.78025 1.82601 2.44735 3.07569 3.21590 3.35623 3.97519 3.99128 4.13774 4.25015 4.32274 4.50015 4.57740 4.62568 4.73666 4.78347 4.85049 5.09221 5.12271 5.16769 5.25772 5.28912 5.38278 5.39968 5.50784 5.54694 5.62876 5.77185 5.89734 6.30552 6.60422 6.94150 7.08091 7.48143 9.00072 Molecular weight = 235.13amu Principal moments of inertia in cm(-1) A = 0.018130 B = 0.008680 C = 0.006177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1543.994687 B = 3225.057855 C = 4531.575839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.506 5.506 2 C 0.241 3.759 3 C -0.039 4.039 4 C -0.095 4.095 5 C -0.125 4.125 6 H 0.140 0.860 7 C -0.103 4.103 8 C -0.115 4.115 9 C -0.108 4.108 10 C -0.133 4.133 11 H 0.103 0.897 12 C 0.038 3.962 13 C -0.502 4.502 14 H 0.056 0.944 15 C -0.006 4.006 16 N -0.941 5.941 17 Si 0.952 3.048 18 H -0.261 1.261 19 H -0.288 1.288 20 H -0.277 1.277 21 C 0.357 3.643 22 O -0.469 6.469 23 H 0.145 0.855 24 H 0.104 0.896 25 H 0.051 0.949 26 H 0.108 0.892 27 H 0.054 0.946 28 H 0.108 0.892 29 H 0.085 0.915 30 H 0.084 0.916 31 H 0.067 0.933 32 H 0.043 0.957 33 H -0.004 1.004 34 H -0.021 1.021 35 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.868 -13.820 -11.940 18.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.185 5.185 2 C -0.075 4.075 3 C -0.079 4.079 4 C -0.134 4.134 5 C -0.144 4.144 6 H 0.157 0.843 7 C -0.141 4.141 8 C -0.152 4.152 9 C -0.146 4.146 10 C -0.152 4.152 11 H 0.121 0.879 12 C 0.001 3.999 13 C -0.540 4.540 14 H 0.074 0.926 15 C -0.202 4.202 16 N -0.583 5.583 17 Si 0.777 3.223 18 H -0.185 1.185 19 H -0.213 1.213 20 H -0.202 1.202 21 C 0.233 3.767 22 O -0.343 6.343 23 H 0.162 0.838 24 H 0.122 0.878 25 H 0.070 0.930 26 H 0.126 0.874 27 H 0.073 0.927 28 H 0.126 0.874 29 H 0.104 0.896 30 H 0.103 0.897 31 H 0.086 0.914 32 H 0.062 0.938 33 H 0.014 0.986 34 H -0.003 1.003 35 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -2.936 -13.343 -11.475 17.842 hybrid contribution 0.335 0.892 1.398 1.692 sum -2.601 -12.450 -10.078 16.227 Atomic orbital electron populations 1.81192 1.14806 1.11595 1.10873 1.29785 0.95712 0.90868 0.91173 1.19805 0.79466 1.07017 1.01612 1.21393 0.93990 1.02639 0.95364 1.22016 0.95375 1.00208 0.96792 0.84255 1.21588 0.95502 1.03161 0.93830 1.21565 0.95726 0.97761 1.00163 1.21598 1.01229 0.99263 0.92485 1.21965 0.95900 1.00088 0.97229 0.87934 1.18868 0.94397 0.92645 0.93978 1.21448 1.41327 0.97712 0.93509 0.92557 1.25845 0.95861 0.95120 1.03403 1.70084 1.48895 1.04332 1.34974 0.85698 0.78745 0.77725 0.80092 1.18536 1.21336 1.20220 1.25327 0.90550 0.81325 0.79534 1.90366 1.59670 1.47617 1.36629 0.83775 0.87808 0.92968 0.87367 0.92736 0.87359 0.89645 0.89701 0.91421 0.93764 0.98603 1.00310 0.93299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -16.23 18.54 20.00 0.37 -15.86 16 2 C 0.24 6.29 15.43 89.44 1.38 7.67 16 3 C -0.04 -0.80 5.46 28.79 0.16 -0.64 16 4 C -0.10 -1.72 4.33 30.60 0.13 -1.59 16 5 C -0.13 -2.33 2.47 -11.27 -0.03 -2.35 16 6 H 0.14 1.68 8.14 -2.39 -0.02 1.66 16 7 C -0.10 -1.55 5.23 30.66 0.16 -1.39 16 8 C -0.11 -1.89 5.81 30.57 0.18 -1.72 16 9 C -0.11 -2.95 5.23 30.66 0.16 -2.79 16 10 C -0.13 -4.74 2.41 -11.28 -0.03 -4.77 16 11 H 0.10 3.36 8.14 -2.39 -0.02 3.34 16 12 C 0.04 1.96 4.15 29.85 0.12 2.09 16 13 C -0.50 -28.32 7.69 25.60 0.20 -28.12 16 14 H 0.06 3.04 7.56 -2.91 -0.02 3.02 16 15 C -0.01 -0.37 5.46 84.66 0.46 0.09 16 16 N -0.94 -59.02 13.29 21.45 0.28 -58.74 16 17 Si 0.95 45.91 29.54 68.60 2.03 47.93 16 18 H -0.26 -11.73 7.11 99.48 0.71 -11.03 16 19 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 20 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 21 C 0.36 11.64 6.03 29.47 0.18 11.82 16 22 O -0.47 -19.95 12.61 -1.44 -0.02 -19.96 16 23 H 0.14 1.77 8.14 -2.39 -0.02 1.75 16 24 H 0.10 2.85 5.78 -2.39 -0.01 2.84 16 25 H 0.05 1.20 8.09 -2.39 -0.02 1.18 16 26 H 0.11 1.24 8.14 -2.39 -0.02 1.23 16 27 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 28 H 0.11 0.90 8.14 -2.39 -0.02 0.88 16 29 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 32 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.00 -0.24 8.14 -2.39 -0.02 -0.26 16 34 H -0.02 -1.27 8.09 -2.39 -0.02 -1.29 16 35 H 0.26 15.41 8.31 -92.71 -0.77 14.64 16 Total: -1.00 -76.40 292.38 6.80 -69.60 By element: Atomic # 1 Polarization: -2.34 SS G_CDS: 1.06 Total: -1.28 kcal Atomic # 6 Polarization: -24.77 SS G_CDS: 3.07 Total: -21.69 kcal Atomic # 7 Polarization: -75.25 SS G_CDS: 0.66 Total: -74.59 kcal Atomic # 8 Polarization: -19.95 SS G_CDS: -0.02 Total: -19.96 kcal Atomic # 14 Polarization: 45.91 SS G_CDS: 2.03 Total: 47.93 kcal Total: -76.40 6.80 -69.60 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000002162345.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.912 kcal (2) G-P(sol) polarization free energy of solvation -76.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.601 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds