Wall clock time and date at job start Mon Mar 30 2020 17:37:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 C 1.53004 * 109.46822 * 124.23580 * 3 2 1 5 5 C 1.52998 * 109.46935 * 179.97438 * 4 3 2 6 6 H 1.09000 * 109.62074 * 305.37956 * 5 4 3 7 7 C 1.53236 * 109.62418 * 185.00006 * 5 4 3 8 8 C 1.52955 * 109.40158 * 185.46307 * 7 5 4 9 9 C 1.52965 * 109.81749 * 63.60214 * 8 7 5 10 10 C 1.53232 * 109.40263 * 296.40137 * 9 8 7 11 11 H 1.09001 * 109.77990 * 174.43678 * 10 9 8 12 12 C 1.52997 * 109.62208 * 294.91027 * 10 9 8 13 13 C 1.50697 * 109.47101 * 184.04447 * 12 10 9 14 14 H 1.08007 * 120.00102 * 0.02562 * 13 12 10 15 15 C 1.37885 * 120.00363 * 179.97438 * 13 12 10 16 16 N 1.31514 * 120.00027 * 180.02562 * 15 13 12 17 17 Si 1.86800 * 119.99839 * 0.02562 * 15 13 12 18 18 H 1.48498 * 109.46990 * 89.99389 * 17 15 13 19 19 H 1.48492 * 109.47044 * 209.99909 * 17 15 13 20 20 H 1.48499 * 109.46970 * 329.99910 * 17 15 13 21 21 C 1.51263 * 108.53724 * 54.62368 * 10 9 8 22 22 O 1.20761 * 120.84845 * 128.63707 * 21 10 9 23 23 H 1.08995 * 109.47449 * 4.24046 * 3 2 1 24 24 H 1.08992 * 109.46869 * 244.23333 * 3 2 1 25 25 H 1.09004 * 109.47111 * 59.99606 * 4 3 2 26 26 H 1.08996 * 109.47132 * 300.00064 * 4 3 2 27 27 H 1.08988 * 109.48104 * 305.44665 * 7 5 4 28 28 H 1.09004 * 109.47964 * 65.49143 * 7 5 4 29 29 H 1.08999 * 109.41331 * 183.70606 * 8 7 5 30 30 H 1.08999 * 109.41654 * 303.49134 * 8 7 5 31 31 H 1.08995 * 109.48255 * 176.42142 * 9 8 7 32 32 H 1.08998 * 109.49045 * 56.38123 * 9 8 7 33 33 H 1.08996 * 109.47419 * 304.04440 * 12 10 9 34 34 H 1.09000 * 109.47696 * 64.04726 * 12 10 9 35 35 H 0.96998 * 119.99566 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6081 0.0007 0.0000 4 6 3.1176 0.8125 -1.1926 5 6 4.6476 0.8137 -1.1923 6 1 5.0131 1.1718 -0.2298 7 6 5.1618 1.7269 -2.3102 8 6 6.6852 1.6194 -2.3939 9 6 7.0840 0.1948 -2.7831 10 6 6.6421 -0.7760 -1.6830 11 1 6.8341 -1.8019 -1.9974 12 6 7.4144 -0.4800 -0.3958 13 6 7.0505 -1.4982 0.6538 14 1 6.3398 -2.2788 0.4255 15 6 7.6257 -1.4341 1.9053 16 7 7.3085 -2.3231 2.8211 17 14 8.8556 -0.0846 2.2999 18 1 8.1372 1.0966 2.8421 19 1 9.8266 -0.5794 3.3085 20 1 9.5804 0.3017 1.0628 21 6 5.1609 -0.5872 -1.4415 22 8 4.4072 -1.5308 -1.4478 23 1 2.9719 -1.0240 -0.0760 24 1 2.9711 0.4475 0.9254 25 1 2.7537 1.8372 -1.1167 26 1 2.7545 0.3656 -2.1181 27 1 4.7230 1.4212 -3.2599 28 1 4.8814 2.7581 -2.0951 29 1 7.0571 2.3174 -3.1439 30 1 7.1196 1.8653 -1.4249 31 1 8.1659 0.1401 -2.9031 32 1 6.5999 -0.0748 -3.7217 33 1 8.4849 -0.5300 -0.5948 34 1 7.1574 0.5173 -0.0390 35 1 7.7128 -2.2777 3.7016 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000002162346.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:37:36 Heat of formation + Delta-G solvation = -45.102839 kcal Electronic energy + Delta-G solvation = -16843.987877 eV Core-core repulsion = 14226.859681 eV Total energy + Delta-G solvation = -2617.128196 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.131 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.99973 -36.64878 -36.26544 -34.34515 -32.80177 -30.98942 -28.94054 -26.91796 -24.03789 -22.50399 -21.63942 -20.60792 -17.96104 -17.21482 -16.83409 -15.93254 -15.35972 -14.50241 -14.34488 -14.10527 -13.96678 -13.52395 -13.06164 -12.93096 -12.78975 -12.45613 -12.32855 -11.91600 -11.80723 -11.70682 -11.43092 -11.09804 -10.87879 -10.77248 -10.56878 -10.38565 -10.28054 -9.88109 -9.63486 -9.27176 -8.66267 -8.53184 -6.11300 -4.11506 2.64727 2.94358 2.99791 3.22212 3.32170 3.32553 4.16451 4.36223 4.50098 4.91453 4.93608 5.05501 5.22464 5.25423 5.30443 5.46573 5.58665 5.64647 5.72442 5.80349 5.84866 6.00266 6.05839 6.14873 6.22736 6.30400 6.34965 6.38738 6.53585 6.66628 7.06979 7.17370 7.65969 7.75140 8.17685 8.44243 8.96447 9.49263 11.01656 Molecular weight = 235.13amu Principal moments of inertia in cm(-1) A = 0.019412 B = 0.009069 C = 0.007166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1442.052521 B = 3086.760153 C = 3906.426960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.460 5.460 2 C 0.221 3.779 3 C -0.043 4.043 4 C -0.096 4.096 5 C -0.141 4.141 6 H 0.114 0.886 7 C -0.104 4.104 8 C -0.127 4.127 9 C -0.113 4.113 10 C -0.122 4.122 11 H 0.087 0.913 12 C -0.001 4.001 13 C -0.530 4.530 14 H 0.077 0.923 15 C 0.071 3.929 16 N -0.896 5.896 17 Si 0.873 3.127 18 H -0.276 1.276 19 H -0.287 1.287 20 H -0.264 1.264 21 C 0.391 3.609 22 O -0.462 6.462 23 H 0.131 0.869 24 H 0.109 0.891 25 H 0.072 0.928 26 H 0.071 0.929 27 H 0.063 0.937 28 H 0.070 0.930 29 H 0.062 0.938 30 H 0.075 0.925 31 H 0.069 0.931 32 H 0.056 0.944 33 H 0.027 0.973 34 H 0.020 0.980 35 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.748 10.034 -9.413 13.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.138 5.138 2 C -0.096 4.096 3 C -0.083 4.083 4 C -0.135 4.135 5 C -0.160 4.160 6 H 0.132 0.868 7 C -0.142 4.142 8 C -0.165 4.165 9 C -0.151 4.151 10 C -0.142 4.142 11 H 0.106 0.894 12 C -0.038 4.038 13 C -0.568 4.568 14 H 0.095 0.905 15 C -0.131 4.131 16 N -0.535 5.535 17 Si 0.701 3.299 18 H -0.202 1.202 19 H -0.213 1.213 20 H -0.189 1.189 21 C 0.267 3.733 22 O -0.335 6.335 23 H 0.149 0.851 24 H 0.127 0.873 25 H 0.091 0.909 26 H 0.090 0.910 27 H 0.082 0.918 28 H 0.088 0.912 29 H 0.081 0.919 30 H 0.093 0.907 31 H 0.088 0.912 32 H 0.075 0.925 33 H 0.045 0.955 34 H 0.038 0.962 35 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -2.823 9.468 -9.227 13.518 hybrid contribution 1.252 0.629 0.527 1.497 sum -1.571 10.097 -8.700 13.420 Atomic orbital electron populations 1.81155 1.13229 1.09977 1.09450 1.29416 0.95414 0.92272 0.92471 1.19669 0.81005 1.06412 1.01233 1.21363 0.94395 0.99916 0.97857 1.21953 0.95119 0.96701 1.02199 0.86797 1.21516 0.96074 0.98964 0.97602 1.21619 0.95279 0.96982 1.02598 1.21642 1.01430 0.94434 0.97552 1.21889 0.93605 1.00539 0.98132 0.89420 1.19596 0.95449 0.97321 0.91415 1.21186 1.26741 1.13342 0.95503 0.90538 1.25010 0.96190 0.95630 0.96251 1.69916 1.43591 1.35282 1.04672 0.86879 0.81931 0.82563 0.78566 1.20174 1.21346 1.18875 1.24548 0.90783 0.88905 0.69019 1.90270 1.60156 1.44326 1.38797 0.85107 0.87281 0.90927 0.91007 0.91825 0.91157 0.91917 0.90658 0.91220 0.92517 0.95513 0.96184 0.92639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -7.85 18.54 42.15 0.78 -7.07 16 2 C 0.22 3.29 15.43 -20.76 -0.32 2.97 16 3 C -0.04 -0.58 5.47 -29.51 -0.16 -0.74 16 4 C -0.10 -1.14 4.33 -26.73 -0.12 -1.26 16 5 C -0.14 -1.85 2.16 -91.37 -0.20 -2.05 16 6 H 0.11 1.53 7.67 -51.93 -0.40 1.13 16 7 C -0.10 -1.10 5.23 -26.63 -0.14 -1.24 16 8 C -0.13 -1.45 5.65 -26.77 -0.15 -1.60 16 9 C -0.11 -1.50 5.41 -26.63 -0.14 -1.64 16 10 C -0.12 -2.15 2.60 -91.38 -0.24 -2.39 16 11 H 0.09 1.67 8.14 -51.93 -0.42 1.25 16 12 C 0.00 -0.01 3.15 -27.89 -0.09 -0.10 16 13 C -0.53 -13.91 9.16 -34.44 -0.32 -14.22 16 14 H 0.08 2.25 7.86 -52.48 -0.41 1.84 16 15 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 16 N -0.90 -26.46 13.96 55.43 0.77 -25.68 16 17 Si 0.87 20.04 27.47 -169.99 -4.67 15.37 16 18 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 19 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 20 H -0.26 -5.72 6.54 56.52 0.37 -5.35 16 21 C 0.39 6.70 5.10 -28.48 -0.15 6.56 16 22 O -0.46 -9.12 14.74 6.00 0.09 -9.03 16 23 H 0.13 2.07 5.79 -51.93 -0.30 1.77 16 24 H 0.11 1.30 8.14 -51.93 -0.42 0.88 16 25 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.07 0.87 8.09 -51.93 -0.42 0.45 16 27 H 0.06 0.64 8.14 -51.94 -0.42 0.21 16 28 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.07 0.94 6.51 -51.93 -0.34 0.60 16 31 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 33 H 0.03 0.56 7.20 -51.93 -0.37 0.19 16 34 H 0.02 0.39 5.42 -51.93 -0.28 0.11 16 35 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 286.59 15.07 4.32 4.32 Total: -1.00 -30.71 286.59 -5.89 -36.61 By element: Atomic # 1 Polarization: 4.43 SS G_CDS: -5.07 Total: -0.65 kcal Atomic # 6 Polarization: -11.75 SS G_CDS: -2.11 Total: -13.87 kcal Atomic # 7 Polarization: -34.31 SS G_CDS: 1.56 Total: -32.75 kcal Atomic # 8 Polarization: -9.12 SS G_CDS: 0.09 Total: -9.03 kcal Atomic # 14 Polarization: 20.04 SS G_CDS: -4.67 Total: 15.37 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -30.71 -5.89 -36.61 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000002162346.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.495 kcal (2) G-P(sol) polarization free energy of solvation -30.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.608 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds