Wall clock time and date at job start Mon Mar 30 2020 17:34:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 C 1.46494 * 120.00259 * 2 1 4 4 C 1.34782 * 119.99742 * 179.97438 * 2 1 3 5 5 O 1.21548 * 120.00257 * 4.25421 * 4 2 1 6 6 C 1.47853 * 119.99884 * 184.24518 * 4 2 1 7 7 C 1.39625 * 120.51976 * 328.52709 * 6 4 2 8 8 N 1.31689 * 120.76854 * 179.97438 * 7 6 4 9 9 C 1.31840 * 121.98145 * 359.97383 * 8 7 6 10 10 C 1.39151 * 120.95376 * 0.02562 * 9 8 7 11 11 N 1.39360 * 120.44373 * 180.02562 * 10 9 8 12 12 C 1.36830 * 119.99465 * 359.97438 * 11 10 9 13 13 H 1.08005 * 120.00581 * 0.02562 * 12 11 10 14 14 C 1.38802 * 119.99975 * 179.97438 * 12 11 10 15 15 N 1.31594 * 119.99578 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 120.00109 * 180.02562 * 14 12 11 17 17 H 1.48497 * 109.47154 * 0.02562 * 16 14 12 18 18 H 1.48503 * 109.46828 * 120.00383 * 16 14 12 19 19 H 1.48504 * 109.47065 * 239.99846 * 16 14 12 20 20 C 1.39249 * 119.12268 * 0.02562 * 10 9 8 21 21 H 1.09002 * 109.47513 * 270.00299 * 1 2 3 22 22 H 1.08998 * 109.47066 * 29.99937 * 1 2 3 23 23 H 1.09003 * 109.47601 * 149.99915 * 1 2 3 24 24 H 1.08995 * 109.47026 * 274.15125 * 3 2 1 25 25 H 1.08997 * 109.47461 * 34.15399 * 3 2 1 26 26 H 1.09006 * 109.47495 * 154.15204 * 3 2 1 27 27 H 1.08005 * 119.61624 * 359.97438 * 7 6 4 28 28 H 1.08003 * 119.52909 * 179.97438 * 9 8 7 29 29 H 0.96991 * 120.00038 * 179.97438 * 11 10 9 30 30 H 0.97005 * 119.99616 * 179.97438 * 15 14 12 31 31 H 1.07996 * 120.89752 * 180.25029 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1974 1.2686 0.0000 4 6 2.1388 -1.1673 0.0005 5 8 1.5336 -2.2185 -0.0771 6 6 3.6143 -1.1690 0.0953 7 6 4.3609 -0.1217 -0.4480 8 7 5.6753 -0.1181 -0.3659 9 6 6.3407 -1.0902 0.2259 10 6 5.6739 -2.1716 0.7936 11 7 6.3879 -3.1932 1.4172 12 6 7.7539 -3.1372 1.4736 13 1 8.2787 -2.3011 1.0353 14 6 8.4651 -4.1543 2.0950 15 7 7.8256 -5.1727 2.6295 16 14 10.3299 -4.0775 2.1727 17 1 10.8026 -2.8390 1.5036 18 1 10.7662 -4.0703 3.5922 19 1 10.9031 -5.2622 1.4847 20 6 4.2836 -2.2196 0.7305 21 1 -0.3634 0.0001 1.0277 22 1 -0.3633 0.8900 -0.5138 23 1 -0.3634 -0.8900 -0.5138 24 1 2.3147 1.6205 -1.0249 25 1 1.6427 2.0086 0.5769 26 1 3.1801 1.1209 0.4481 27 1 3.8547 0.6949 -0.9413 28 1 7.4189 -1.0472 0.2702 29 1 5.9165 -3.9438 1.8111 30 1 8.3226 -5.8837 3.0635 31 1 3.7369 -3.0433 1.1651 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163186473.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:34:46 Heat of formation + Delta-G solvation = 1.904102 kcal Electronic energy + Delta-G solvation = -15962.147142 eV Core-core repulsion = 13243.516977 eV Total energy + Delta-G solvation = -2718.630166 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.57919 -40.02098 -37.39389 -36.61052 -34.10869 -33.06402 -30.68610 -28.59589 -27.63784 -26.65117 -24.45839 -23.51683 -20.82373 -19.78773 -18.68553 -18.02959 -17.20472 -16.89898 -16.86745 -16.26595 -15.92176 -15.24694 -14.90229 -14.65279 -14.21250 -13.90783 -13.84278 -13.46638 -13.29391 -13.17434 -12.96008 -12.63778 -12.37412 -12.08370 -12.01883 -11.28918 -10.90135 -10.40017 -10.20560 -9.67893 -8.77466 -8.55633 -5.80544 -0.03919 0.66847 1.44145 1.47586 1.57920 1.76888 2.03884 2.25136 2.86640 3.21643 3.29531 3.54048 3.92086 4.15157 4.18171 4.37733 4.45453 4.52743 4.55168 4.77201 4.83273 4.93962 4.99302 5.18558 5.24097 5.38630 5.51185 5.63627 5.97096 6.24940 6.71107 7.04413 7.22152 7.37274 7.48363 8.62095 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.050772 B = 0.005477 C = 0.005040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 551.355824 B = 5111.064576 C = 5554.437810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.610 5.610 3 C 0.052 3.948 4 C 0.560 3.440 5 O -0.583 6.583 6 C -0.130 4.130 7 C -0.007 4.007 8 N -0.445 5.445 9 C 0.002 3.998 10 C 0.142 3.858 11 N -0.565 5.565 12 C -0.321 4.321 13 H 0.115 0.885 14 C -0.026 4.026 15 N -0.925 5.925 16 Si 1.002 2.998 17 H -0.252 1.252 18 H -0.278 1.278 19 H -0.279 1.279 20 C -0.159 4.159 21 H 0.061 0.939 22 H 0.108 0.892 23 H 0.058 0.942 24 H 0.086 0.914 25 H 0.098 0.902 26 H 0.085 0.915 27 H 0.193 0.807 28 H 0.151 0.849 29 H 0.393 0.607 30 H 0.278 0.722 31 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.061 12.426 -3.545 15.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.342 5.342 3 C -0.090 4.090 4 C 0.349 3.651 5 O -0.465 6.465 6 C -0.136 4.136 7 C -0.168 4.168 8 N -0.153 5.153 9 C -0.165 4.165 10 C 0.020 3.980 11 N -0.167 5.167 12 C -0.450 4.450 13 H 0.132 0.868 14 C -0.226 4.226 15 N -0.563 5.563 16 Si 0.825 3.175 17 H -0.176 1.176 18 H -0.204 1.204 19 H -0.205 1.205 20 C -0.191 4.191 21 H 0.080 0.920 22 H 0.127 0.873 23 H 0.077 0.923 24 H 0.104 0.896 25 H 0.117 0.883 26 H 0.103 0.897 27 H 0.209 0.791 28 H 0.169 0.831 29 H 0.227 0.773 30 H 0.087 0.913 31 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -7.607 12.333 -3.763 14.971 hybrid contribution 0.065 -1.750 0.887 1.963 sum -7.543 10.584 -2.876 13.311 Atomic orbital electron populations 1.21840 0.77433 1.04121 1.02653 1.47712 1.08143 1.06204 1.72120 1.22731 0.98624 0.83763 1.03849 1.18441 0.87102 0.83813 0.75724 1.90706 1.70623 1.32953 1.52203 1.20473 0.93187 0.97227 1.02713 1.23272 0.89208 0.99132 1.05155 1.67369 1.09815 1.25133 1.12947 1.22218 1.00020 0.91383 1.02835 1.18910 0.91276 0.91585 0.96185 1.41012 1.06132 1.19110 1.50467 1.20158 0.81567 1.08215 1.35067 0.86792 1.26272 1.05700 0.94618 0.95966 1.69804 1.38758 1.10725 1.37026 0.84705 0.75661 0.78980 0.78137 1.17571 1.20352 1.20490 1.20781 0.92020 1.00098 1.06169 0.91996 0.87343 0.92263 0.89572 0.88319 0.89715 0.79110 0.83147 0.77303 0.91302 0.86780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.52 10.49 127.77 1.34 2.86 16 2 N -0.61 -15.08 3.27 -875.38 -2.87 -17.94 16 3 C 0.05 0.87 8.80 127.77 1.12 1.99 16 4 C 0.56 19.74 7.46 86.79 0.65 20.38 16 5 O -0.58 -24.84 16.36 -3.87 -0.06 -24.90 16 6 C -0.13 -4.89 5.48 -20.01 -0.11 -5.00 16 7 C -0.01 -0.23 8.63 85.05 0.73 0.50 16 8 N -0.45 -17.06 10.34 -194.09 -2.01 -19.07 16 9 C 0.00 0.10 10.47 84.91 0.89 0.99 16 10 C 0.14 6.48 6.64 38.41 0.25 6.73 16 11 N -0.56 -28.09 5.44 -184.06 -1.00 -29.09 16 12 C -0.32 -16.14 9.57 84.05 0.80 -15.33 16 13 H 0.11 5.37 5.70 -2.91 -0.02 5.35 16 14 C -0.03 -1.29 5.50 84.86 0.47 -0.82 16 15 N -0.93 -49.62 13.05 21.65 0.28 -49.34 16 16 Si 1.00 39.47 29.55 68.60 2.03 41.50 16 17 H -0.25 -9.29 7.11 99.48 0.71 -8.58 16 18 H -0.28 -10.81 7.11 99.48 0.71 -10.10 16 19 H -0.28 -10.93 7.11 99.48 0.71 -10.22 16 20 C -0.16 -6.85 9.61 22.90 0.22 -6.63 16 21 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 22 H 0.11 1.18 8.07 -2.39 -0.02 1.16 16 23 H 0.06 1.35 7.37 -2.39 -0.02 1.34 16 24 H 0.09 1.08 7.44 -2.39 -0.02 1.06 16 25 H 0.10 1.07 8.10 -2.39 -0.02 1.05 16 26 H 0.08 1.78 4.73 -2.38 -0.01 1.76 16 27 H 0.19 4.76 4.77 -2.91 -0.01 4.74 16 28 H 0.15 6.27 5.96 -2.91 -0.02 6.25 16 29 H 0.39 20.38 7.91 -92.72 -0.73 19.65 16 30 H 0.28 14.01 8.31 -92.70 -0.77 13.24 16 31 H 0.11 5.05 8.01 -2.91 -0.02 5.03 16 Total: -1.00 -63.56 266.49 3.19 -60.38 By element: Atomic # 1 Polarization: 32.34 SS G_CDS: 0.44 Total: 32.78 kcal Atomic # 6 Polarization: -0.70 SS G_CDS: 6.37 Total: 5.68 kcal Atomic # 7 Polarization: -109.85 SS G_CDS: -5.59 Total: -115.44 kcal Atomic # 8 Polarization: -24.84 SS G_CDS: -0.06 Total: -24.90 kcal Atomic # 14 Polarization: 39.47 SS G_CDS: 2.03 Total: 41.50 kcal Total: -63.56 3.19 -60.38 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163186473.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.282 kcal (2) G-P(sol) polarization free energy of solvation -63.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.378 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds