Wall clock time and date at job start Mon Mar 30 2020 17:35:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46491 * 1 3 3 C 1.37100 * 120.00391 * 2 1 4 4 H 1.08000 * 120.00030 * 142.82620 * 3 2 1 5 5 C 1.38954 * 119.99856 * 322.83207 * 3 2 1 6 6 N 1.31409 * 119.99867 * 158.40543 * 5 3 2 7 7 Si 1.86796 * 120.00022 * 338.40401 * 5 3 2 8 8 H 1.48498 * 109.47187 * 95.72022 * 7 5 3 9 9 H 1.48502 * 109.47299 * 215.72305 * 7 5 3 10 10 H 1.48506 * 109.46968 * 335.71847 * 7 5 3 11 11 C 1.34779 * 119.99946 * 180.02562 * 2 1 3 12 12 O 1.21296 * 120.00269 * 179.97438 * 11 2 1 13 13 C 1.50699 * 119.99813 * 359.97438 * 11 2 1 14 14 C 1.53007 * 109.46763 * 180.02562 * 13 11 2 15 15 C 1.50699 * 109.46763 * 180.02562 * 14 13 11 16 16 N 1.31802 * 119.12241 * 269.72938 * 15 14 13 17 17 C 1.32329 * 120.81740 * 179.76632 * 16 15 14 18 18 C 1.38601 * 119.10592 * 0.49748 * 17 16 15 19 19 C 1.38599 * 118.39614 * 359.75435 * 18 17 16 20 20 N 1.31791 * 119.12680 * 90.00021 * 15 14 13 21 21 H 1.09002 * 109.47211 * 265.13263 * 1 2 3 22 22 H 1.09001 * 109.47166 * 25.12952 * 1 2 3 23 23 H 1.08997 * 109.47446 * 145.13155 * 1 2 3 24 24 H 0.97000 * 119.99835 * 180.02562 * 6 5 3 25 25 H 1.08995 * 109.47101 * 59.99993 * 13 11 2 26 26 H 1.09002 * 109.47002 * 299.99805 * 13 11 2 27 27 H 1.09002 * 109.47160 * 299.99657 * 14 13 11 28 28 H 1.08995 * 109.47359 * 60.00100 * 14 13 11 29 29 H 1.08003 * 120.44881 * 180.23577 * 17 16 15 30 30 H 1.07996 * 120.80064 * 179.77854 * 18 17 16 31 31 H 1.08002 * 120.44100 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1505 1.1873 0.0000 4 1 3.0659 1.2822 0.5651 5 6 1.6675 2.2684 -0.7270 6 7 2.0433 3.4890 -0.4174 7 14 0.4839 1.9869 -2.1445 8 1 -0.9113 2.1587 -1.6660 9 1 0.7616 2.9685 -3.2237 10 1 0.6607 0.6095 -2.6708 11 6 2.1388 -1.1672 -0.0005 12 8 3.3518 -1.1673 -0.0010 13 6 1.3852 -2.4723 -0.0005 14 6 2.3796 -3.6352 -0.0005 15 6 1.6260 -4.9403 -0.0012 16 7 1.3096 -5.4989 1.1500 17 6 0.6443 -6.6421 1.1886 18 6 0.2898 -7.2564 -0.0022 19 6 0.6446 -6.6412 -1.1924 20 7 1.3056 -5.4955 -1.1527 21 1 -0.3634 -0.0872 1.0240 22 1 -0.3633 0.9304 -0.4364 23 1 -0.3634 -0.8431 -0.5875 24 1 1.7058 4.2437 -0.9247 25 1 0.7583 -2.5298 -0.8902 26 1 0.7590 -2.5302 0.8897 27 1 3.0062 -3.5775 -0.8905 28 1 3.0062 -3.5775 0.8894 29 1 0.3848 -7.0926 2.1352 30 1 -0.2502 -8.1917 -0.0027 31 1 0.3848 -7.0907 -2.1395 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001261217254.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:35:16 Heat of formation + Delta-G solvation = 25.088973 kcal Electronic energy + Delta-G solvation = -15924.915019 eV Core-core repulsion = 13207.290225 eV Total energy + Delta-G solvation = -2717.624794 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.09479 -38.68503 -34.95205 -33.90129 -33.78760 -32.02756 -30.65389 -26.60228 -26.04791 -24.63939 -24.05251 -21.91056 -18.67680 -17.62161 -17.16515 -16.99263 -15.99883 -15.61881 -15.16650 -14.97563 -14.74513 -13.74389 -13.61114 -13.22270 -12.94574 -12.61963 -12.30159 -11.85911 -11.83284 -11.48494 -10.96623 -10.88019 -10.81386 -10.63002 -10.33612 -9.89207 -9.62234 -9.30546 -9.04323 -8.46809 -7.70502 -6.36150 -3.92812 0.77194 0.98350 3.05393 3.24457 3.29731 3.64205 3.77693 3.86055 4.08764 4.18022 4.43474 4.56348 4.83376 4.94533 5.01516 5.26365 5.43436 5.45219 5.64109 5.73056 5.80455 6.01761 6.13191 6.21607 6.31897 6.34302 6.48939 6.91437 7.57913 8.05213 8.32258 8.54484 9.00180 9.35624 9.80906 10.76107 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.045961 B = 0.005571 C = 0.005324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 609.069913 B = 5025.082202 C = 5258.072516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.472 5.472 3 C -0.316 4.316 4 H 0.106 0.894 5 C 0.058 3.942 6 N -0.865 5.865 7 Si 0.879 3.121 8 H -0.276 1.276 9 H -0.288 1.288 10 H -0.264 1.264 11 C 0.467 3.533 12 O -0.565 6.565 13 C -0.125 4.125 14 C -0.036 4.036 15 C 0.331 3.669 16 N -0.516 5.516 17 C 0.148 3.852 18 C -0.243 4.243 19 C 0.148 3.852 20 N -0.516 5.516 21 H 0.052 0.948 22 H 0.065 0.935 23 H 0.053 0.947 24 H 0.273 0.727 25 H 0.082 0.918 26 H 0.082 0.918 27 H 0.098 0.902 28 H 0.098 0.902 29 H 0.167 0.833 30 H 0.145 0.855 31 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.192 -19.094 -0.115 20.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.194 5.194 3 C -0.443 4.443 4 H 0.123 0.877 5 C -0.147 4.147 6 N -0.502 5.502 7 Si 0.707 3.293 8 H -0.204 1.204 9 H -0.215 1.215 10 H -0.188 1.188 11 C 0.255 3.745 12 O -0.447 6.447 13 C -0.167 4.167 14 C -0.076 4.076 15 C 0.064 3.936 16 N -0.229 5.229 17 C -0.019 4.019 18 C -0.265 4.265 19 C -0.019 4.019 20 N -0.230 5.230 21 H 0.070 0.930 22 H 0.083 0.917 23 H 0.072 0.928 24 H 0.084 0.916 25 H 0.101 0.899 26 H 0.101 0.899 27 H 0.116 0.884 28 H 0.117 0.883 29 H 0.184 0.816 30 H 0.163 0.837 31 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -7.072 -18.002 -0.147 19.342 hybrid contribution -1.440 -0.922 -0.799 1.888 sum -8.513 -18.925 -0.946 20.773 Atomic orbital electron populations 1.21990 0.83492 1.01491 1.00969 1.43671 1.03998 1.05761 1.65948 1.19073 1.10140 0.85455 1.29632 0.87652 1.25365 0.97472 0.94783 0.97099 1.69757 1.43987 0.98066 1.38383 0.86931 0.80162 0.79052 0.83138 1.20366 1.21454 1.18846 1.20098 0.88111 0.84561 0.81706 1.90559 1.13807 1.87000 1.53318 1.21519 0.98711 0.93233 1.03228 1.20185 0.96333 0.85235 1.05817 1.23518 0.91079 0.95856 0.83115 1.68360 1.12949 1.10892 1.30742 1.23274 0.89879 0.89967 0.98733 1.22875 1.04954 1.03554 0.95142 1.23272 0.89901 0.89927 0.98751 1.68354 1.12946 1.10934 1.30754 0.92997 0.91652 0.92820 0.91637 0.89941 0.89943 0.88376 0.88344 0.81629 0.83727 0.81651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.30 8.78 59.84 0.53 1.82 16 2 N -0.47 -11.76 2.59 -122.20 -0.32 -12.07 16 3 C -0.32 -9.18 9.37 -14.93 -0.14 -9.32 16 4 H 0.11 3.42 7.90 -52.49 -0.41 3.01 16 5 C 0.06 1.64 5.29 -17.47 -0.09 1.55 16 6 N -0.87 -25.45 13.96 55.50 0.77 -24.68 16 7 Si 0.88 20.95 24.96 -169.99 -4.24 16.71 16 8 H -0.28 -6.10 6.69 56.52 0.38 -5.72 16 9 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 10 H -0.26 -6.26 7.11 56.52 0.40 -5.85 16 11 C 0.47 11.09 7.63 -10.98 -0.08 11.00 16 12 O -0.56 -15.41 15.85 5.54 0.09 -15.32 16 13 C -0.13 -2.25 4.30 -27.88 -0.12 -2.37 16 14 C -0.04 -0.61 4.94 -27.88 -0.14 -0.75 16 15 C 0.33 5.01 6.90 -157.19 -1.08 3.93 16 16 N -0.52 -7.22 10.33 -10.72 -0.11 -7.34 16 17 C 0.15 1.49 11.30 -17.20 -0.19 1.29 16 18 C -0.24 -2.03 10.17 -39.31 -0.40 -2.43 16 19 C 0.15 1.50 11.30 -17.20 -0.19 1.31 16 20 N -0.52 -7.31 10.33 -10.72 -0.11 -7.43 16 21 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 22 H 0.07 1.39 3.42 -51.93 -0.18 1.22 16 23 H 0.05 0.91 6.64 -51.93 -0.34 0.57 16 24 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 25 H 0.08 1.39 7.41 -51.93 -0.38 1.01 16 26 H 0.08 1.35 8.11 -51.93 -0.42 0.93 16 27 H 0.10 1.73 8.10 -51.93 -0.42 1.31 16 28 H 0.10 1.71 8.10 -51.93 -0.42 1.29 16 29 H 0.17 1.08 8.06 -52.48 -0.42 0.65 16 30 H 0.14 0.68 8.06 -52.49 -0.42 0.26 16 31 H 0.17 1.10 8.06 -52.49 -0.42 0.68 16 LS Contribution 269.23 15.07 4.06 4.06 Total: -1.00 -34.38 269.23 -5.22 -39.59 By element: Atomic # 1 Polarization: 3.88 SS G_CDS: -3.43 Total: 0.45 kcal Atomic # 6 Polarization: 7.95 SS G_CDS: -1.92 Total: 6.03 kcal Atomic # 7 Polarization: -51.75 SS G_CDS: 0.24 Total: -51.51 kcal Atomic # 8 Polarization: -15.41 SS G_CDS: 0.09 Total: -15.32 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -4.24 Total: 16.71 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -34.38 -5.22 -39.59 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261217254.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.684 kcal (2) G-P(sol) polarization free energy of solvation -34.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.595 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds