Wall clock time and date at job start Mon Mar 30 2020 17:35:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46491 * 1 3 3 C 1.37100 * 120.00391 * 2 1 4 4 H 1.08000 * 120.00030 * 142.82620 * 3 2 1 5 5 C 1.38954 * 119.99856 * 322.83207 * 3 2 1 6 6 N 1.31409 * 119.99867 * 158.40543 * 5 3 2 7 7 Si 1.86796 * 120.00022 * 338.40401 * 5 3 2 8 8 H 1.48498 * 109.47187 * 95.72022 * 7 5 3 9 9 H 1.48502 * 109.47299 * 215.72305 * 7 5 3 10 10 H 1.48506 * 109.46968 * 335.71847 * 7 5 3 11 11 C 1.34779 * 119.99946 * 180.02562 * 2 1 3 12 12 O 1.21296 * 120.00269 * 179.97438 * 11 2 1 13 13 C 1.50699 * 119.99813 * 359.97438 * 11 2 1 14 14 C 1.53007 * 109.46763 * 180.02562 * 13 11 2 15 15 C 1.50699 * 109.46763 * 180.02562 * 14 13 11 16 16 N 1.31802 * 119.12241 * 269.72938 * 15 14 13 17 17 C 1.32329 * 120.81740 * 179.76632 * 16 15 14 18 18 C 1.38601 * 119.10592 * 0.49748 * 17 16 15 19 19 C 1.38599 * 118.39614 * 359.75435 * 18 17 16 20 20 N 1.31791 * 119.12680 * 90.00021 * 15 14 13 21 21 H 1.09002 * 109.47211 * 265.13263 * 1 2 3 22 22 H 1.09001 * 109.47166 * 25.12952 * 1 2 3 23 23 H 1.08997 * 109.47446 * 145.13155 * 1 2 3 24 24 H 0.97000 * 119.99835 * 180.02562 * 6 5 3 25 25 H 1.08995 * 109.47101 * 59.99993 * 13 11 2 26 26 H 1.09002 * 109.47002 * 299.99805 * 13 11 2 27 27 H 1.09002 * 109.47160 * 299.99657 * 14 13 11 28 28 H 1.08995 * 109.47359 * 60.00100 * 14 13 11 29 29 H 1.08003 * 120.44881 * 180.23577 * 17 16 15 30 30 H 1.07996 * 120.80064 * 179.77854 * 18 17 16 31 31 H 1.08002 * 120.44100 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1505 1.1873 0.0000 4 1 3.0659 1.2822 0.5651 5 6 1.6675 2.2684 -0.7270 6 7 2.0433 3.4890 -0.4174 7 14 0.4839 1.9869 -2.1445 8 1 -0.9113 2.1587 -1.6660 9 1 0.7616 2.9685 -3.2237 10 1 0.6607 0.6095 -2.6708 11 6 2.1388 -1.1672 -0.0005 12 8 3.3518 -1.1673 -0.0010 13 6 1.3852 -2.4723 -0.0005 14 6 2.3796 -3.6352 -0.0005 15 6 1.6260 -4.9403 -0.0012 16 7 1.3096 -5.4989 1.1500 17 6 0.6443 -6.6421 1.1886 18 6 0.2898 -7.2564 -0.0022 19 6 0.6446 -6.6412 -1.1924 20 7 1.3056 -5.4955 -1.1527 21 1 -0.3634 -0.0872 1.0240 22 1 -0.3633 0.9304 -0.4364 23 1 -0.3634 -0.8431 -0.5875 24 1 1.7058 4.2437 -0.9247 25 1 0.7583 -2.5298 -0.8902 26 1 0.7590 -2.5302 0.8897 27 1 3.0062 -3.5775 -0.8905 28 1 3.0062 -3.5775 0.8894 29 1 0.3848 -7.0926 2.1352 30 1 -0.2502 -8.1917 -0.0027 31 1 0.3848 -7.0907 -2.1395 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001261217254.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:35:16 Heat of formation + Delta-G solvation = -0.500219 kcal Electronic energy + Delta-G solvation = -15926.024650 eV Core-core repulsion = 13207.290225 eV Total energy + Delta-G solvation = -2718.734425 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.97845 -40.54692 -36.84991 -35.17589 -34.65853 -34.11896 -31.80483 -28.36159 -27.63792 -25.65780 -25.42757 -23.08937 -20.52849 -19.08251 -18.52323 -18.27267 -17.58599 -17.16804 -16.54874 -16.07526 -15.96132 -15.33974 -14.93349 -14.56088 -14.33466 -14.31409 -13.93578 -13.59932 -13.46584 -13.00217 -12.69147 -12.25315 -12.12835 -11.84302 -11.82098 -11.73434 -11.07422 -10.54234 -10.30853 -10.17796 -9.72729 -8.52593 -6.15633 -0.06396 0.21400 1.19072 1.32466 1.45430 1.91862 2.17367 2.57356 2.83459 2.89659 3.07662 3.29301 3.81088 3.84076 4.11625 4.12876 4.23795 4.27274 4.30947 4.50157 4.59752 4.64804 4.78755 4.81020 5.04395 5.06710 5.50078 5.52009 6.02257 6.12242 6.53795 6.91891 7.16768 7.27509 7.84342 8.64896 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.045961 B = 0.005571 C = 0.005324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 609.069913 B = 5025.082202 C = 5258.072516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.058 3.942 2 N -0.485 5.485 3 C -0.340 4.340 4 H 0.044 0.956 5 C 0.011 3.989 6 N -0.911 5.911 7 Si 0.954 3.046 8 H -0.238 1.238 9 H -0.288 1.288 10 H -0.259 1.259 11 C 0.459 3.541 12 O -0.614 6.614 13 C -0.105 4.105 14 C -0.030 4.030 15 C 0.311 3.689 16 N -0.543 5.543 17 C 0.135 3.865 18 C -0.216 4.216 19 C 0.135 3.865 20 N -0.544 5.544 21 H 0.076 0.924 22 H 0.057 0.943 23 H 0.093 0.907 24 H 0.281 0.719 25 H 0.103 0.897 26 H 0.104 0.896 27 H 0.080 0.920 28 H 0.081 0.919 29 H 0.201 0.799 30 H 0.191 0.809 31 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.790 -22.105 -1.157 25.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 N -0.207 5.207 3 C -0.467 4.467 4 H 0.062 0.938 5 C -0.191 4.191 6 N -0.548 5.548 7 Si 0.777 3.223 8 H -0.162 1.162 9 H -0.215 1.215 10 H -0.183 1.183 11 C 0.249 3.751 12 O -0.499 6.499 13 C -0.146 4.146 14 C -0.069 4.069 15 C 0.043 3.957 16 N -0.258 5.258 17 C -0.029 4.029 18 C -0.237 4.237 19 C -0.030 4.030 20 N -0.259 5.259 21 H 0.094 0.906 22 H 0.076 0.924 23 H 0.111 0.889 24 H 0.091 0.909 25 H 0.121 0.879 26 H 0.122 0.878 27 H 0.098 0.902 28 H 0.099 0.901 29 H 0.217 0.783 30 H 0.208 0.792 31 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -10.713 -21.036 -1.167 23.636 hybrid contribution -0.271 -0.108 -0.388 0.485 sum -10.984 -21.144 -1.555 23.877 Atomic orbital electron populations 1.22237 0.80132 1.02705 1.03355 1.43826 1.06091 1.04644 1.66135 1.18694 1.09475 0.88050 1.30529 0.93821 1.26192 0.99884 0.93797 0.99245 1.69870 1.46043 0.99243 1.39691 0.85763 0.79309 0.78894 0.78322 1.16241 1.21533 1.18304 1.21148 0.87950 0.86204 0.79796 1.90524 1.16382 1.87997 1.55009 1.21381 0.98422 0.89755 1.05035 1.19920 0.96111 0.86777 1.04140 1.22858 0.92931 0.95727 0.84161 1.68278 1.14190 1.12870 1.30424 1.23963 0.88979 0.88874 1.01116 1.23347 1.02662 1.04151 0.93560 1.23955 0.89029 0.88843 1.01131 1.68269 1.14207 1.12941 1.30454 0.90602 0.92434 0.88872 0.90948 0.87904 0.87756 0.90175 0.90085 0.78250 0.79183 0.78296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 2.18 8.78 127.77 1.12 3.30 16 2 N -0.48 -24.36 2.59 -658.90 -1.70 -26.06 16 3 C -0.34 -20.66 9.37 84.04 0.79 -19.87 16 4 H 0.04 3.11 7.90 -2.91 -0.02 3.08 16 5 C 0.01 0.63 5.29 84.93 0.45 1.08 16 6 N -0.91 -55.29 13.96 21.66 0.30 -54.99 16 7 Si 0.95 42.60 24.96 68.60 1.71 44.32 16 8 H -0.24 -9.15 6.69 99.48 0.67 -8.48 16 9 H -0.29 -12.83 7.11 99.48 0.71 -12.12 16 10 H -0.26 -11.29 7.11 99.48 0.71 -10.58 16 11 C 0.46 22.24 7.63 87.66 0.67 22.90 16 12 O -0.61 -35.47 15.85 -3.08 -0.05 -35.52 16 13 C -0.10 -3.67 4.30 29.85 0.13 -3.54 16 14 C -0.03 -1.03 4.94 29.85 0.15 -0.88 16 15 C 0.31 9.09 6.90 138.75 0.96 10.04 16 16 N -0.54 -14.26 10.33 -187.84 -1.94 -16.20 16 17 C 0.14 2.23 11.30 84.70 0.96 3.19 16 18 C -0.22 -2.57 10.17 22.44 0.23 -2.34 16 19 C 0.14 2.24 11.30 84.70 0.96 3.20 16 20 N -0.54 -14.37 10.33 -187.84 -1.94 -16.31 16 21 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16 22 H 0.06 2.26 3.42 -2.39 -0.01 2.25 16 23 H 0.09 2.77 6.64 -2.39 -0.02 2.75 16 24 H 0.28 15.52 8.31 -92.71 -0.77 14.75 16 25 H 0.10 3.20 7.41 -2.39 -0.02 3.18 16 26 H 0.10 3.21 8.11 -2.39 -0.02 3.19 16 27 H 0.08 2.96 8.10 -2.39 -0.02 2.94 16 28 H 0.08 2.97 8.10 -2.39 -0.02 2.95 16 29 H 0.20 1.71 8.06 -2.91 -0.02 1.69 16 30 H 0.19 0.51 8.06 -2.91 -0.02 0.49 16 31 H 0.20 1.74 8.06 -2.91 -0.02 1.72 16 Total: -1.00 -81.29 269.23 3.88 -77.41 By element: Atomic # 1 Polarization: 9.18 SS G_CDS: 1.10 Total: 10.28 kcal Atomic # 6 Polarization: 10.68 SS G_CDS: 6.40 Total: 17.08 kcal Atomic # 7 Polarization: -108.28 SS G_CDS: -5.28 Total: -113.57 kcal Atomic # 8 Polarization: -35.47 SS G_CDS: -0.05 Total: -35.52 kcal Atomic # 14 Polarization: 42.60 SS G_CDS: 1.71 Total: 44.32 kcal Total: -81.29 3.88 -77.41 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261217254.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.913 kcal (2) G-P(sol) polarization free energy of solvation -81.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds