Wall clock time and date at job start Mon Mar 30 2020 17:36:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.32147 * 120.00472 * 2 1 4 4 C 1.32125 * 120.00360 * 179.71617 * 3 2 1 5 5 C 1.38393 * 119.99614 * 0.49395 * 4 3 2 6 6 N 1.32130 * 119.99464 * 359.50462 * 5 4 3 7 7 C 1.32148 * 119.99815 * 0.25615 * 6 5 4 8 8 C 1.50709 * 119.99233 * 180.02562 * 7 6 5 9 9 H 1.09004 * 109.46810 * 194.83887 * 8 7 6 10 10 C 1.52990 * 109.47219 * 74.83925 * 8 7 6 11 11 N 1.46502 * 109.47200 * 314.83042 * 8 7 6 12 12 C 1.34766 * 120.00093 * 205.00229 * 11 8 7 13 13 O 1.21687 * 120.00429 * 0.02562 * 12 11 8 14 14 C 1.46376 * 119.99957 * 180.02562 * 12 11 8 15 15 H 1.08001 * 119.99903 * 6.65526 * 14 12 11 16 16 C 1.40048 * 119.99944 * 186.66628 * 14 12 11 17 17 N 1.30667 * 120.00160 * 6.70589 * 16 14 12 18 18 Si 1.86802 * 119.99768 * 186.70651 * 16 14 12 19 19 H 1.48510 * 109.47081 * 84.98898 * 18 16 14 20 20 H 1.48500 * 109.47044 * 204.98578 * 18 16 14 21 21 H 1.48494 * 109.47166 * 324.99109 * 18 16 14 22 22 H 1.08999 * 109.47170 * 264.17867 * 1 2 3 23 23 H 1.09002 * 109.46801 * 24.16920 * 1 2 3 24 24 H 1.08996 * 109.47395 * 144.17382 * 1 2 3 25 25 H 1.08000 * 120.00350 * 180.25494 * 4 3 2 26 26 H 1.08001 * 120.00148 * 179.78125 * 5 4 3 27 27 H 1.09004 * 109.47199 * 299.99724 * 10 8 7 28 28 H 1.08995 * 109.47453 * 60.00029 * 10 8 7 29 29 H 1.09005 * 109.47235 * 179.97438 * 10 8 7 30 30 H 0.97005 * 119.99366 * 25.01121 * 11 8 7 31 31 H 0.97003 * 119.99912 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1678 1.1444 0.0000 4 6 3.4891 1.1444 0.0057 5 6 4.1810 -0.0542 0.0013 6 7 3.5201 -1.1984 0.0013 7 6 2.1987 -1.1981 0.0004 8 6 1.4451 -2.5033 0.0010 9 1 0.4033 -2.3213 -0.2630 10 6 1.5158 -3.1324 1.3938 11 7 2.0448 -3.4140 -0.9773 12 6 1.3039 -4.3973 -1.5253 13 8 0.1365 -4.5286 -1.2078 14 6 1.9033 -5.3076 -2.5024 15 1 2.9632 -5.2609 -2.7045 16 6 1.1023 -6.2387 -3.1753 17 7 -0.1959 -6.2093 -3.0305 18 14 1.8901 -7.5229 -4.2798 19 1 2.3107 -8.6887 -3.4616 20 1 0.9090 -7.9645 -5.3032 21 1 3.0770 -6.9363 -4.9524 22 1 -0.3633 -0.1042 1.0224 23 1 -0.3633 0.9376 -0.4208 24 1 -0.3634 -0.8332 -0.6015 25 1 4.0291 2.0796 0.0098 26 1 5.2610 -0.0543 0.0023 27 1 2.5576 -3.3143 1.6579 28 1 1.0695 -2.4548 2.1216 29 1 0.9703 -4.0761 1.3944 30 1 2.9753 -3.3092 -1.2306 31 1 -0.7506 -6.8545 -3.4962 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001336053453.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:36:03 Heat of formation + Delta-G solvation = -24.941972 kcal Electronic energy + Delta-G solvation = -16228.607725 eV Core-core repulsion = 13508.813427 eV Total energy + Delta-G solvation = -2719.794299 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.25644 -39.50591 -36.53832 -35.43017 -34.59593 -33.30945 -31.00801 -28.98931 -28.19589 -26.12841 -23.93257 -23.04893 -21.29227 -19.53830 -18.66995 -17.64678 -17.23364 -16.68372 -16.18759 -16.03013 -15.63821 -14.94063 -14.69219 -14.35237 -13.86590 -13.79251 -13.40930 -13.37510 -13.29519 -12.85476 -12.79488 -12.59127 -12.52421 -12.08392 -12.02351 -11.91862 -10.92116 -10.15532 -10.05999 -9.80400 -9.46644 -8.31817 -6.84416 -0.22817 0.13847 1.39808 1.41988 1.55836 2.24627 2.46579 2.65369 3.00586 3.03651 3.23164 3.57698 3.63335 3.68629 4.13254 4.27299 4.38551 4.40806 4.45753 4.63594 4.71659 4.75831 4.94370 5.07110 5.19480 5.32154 5.48501 5.88310 6.17656 6.24512 6.35417 6.82259 6.87145 7.52632 8.48217 8.66186 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.037558 B = 0.006241 C = 0.005862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 745.341966 B = 4485.207920 C = 4775.439838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.077 3.923 3 N -0.455 5.455 4 C 0.056 3.944 5 C 0.045 3.955 6 N -0.451 5.451 7 C 0.066 3.934 8 C 0.198 3.802 9 H 0.082 0.918 10 C -0.141 4.141 11 N -0.745 5.745 12 C 0.545 3.455 13 O -0.626 6.626 14 C -0.577 4.577 15 H 0.081 0.919 16 C 0.033 3.967 17 N -0.820 5.820 18 Si 0.996 3.004 19 H -0.262 1.262 20 H -0.271 1.271 21 H -0.252 1.252 22 H 0.100 0.900 23 H 0.091 0.909 24 H 0.070 0.930 25 H 0.213 0.787 26 H 0.208 0.792 27 H 0.058 0.942 28 H 0.077 0.923 29 H 0.041 0.959 30 H 0.393 0.607 31 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.179 12.270 5.105 15.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.062 4.062 3 N -0.170 5.170 4 C -0.105 4.105 5 C -0.116 4.116 6 N -0.166 5.166 7 C -0.074 4.074 8 C 0.091 3.909 9 H 0.100 0.900 10 C -0.200 4.200 11 N -0.399 5.399 12 C 0.349 3.651 13 O -0.513 6.513 14 C -0.614 4.614 15 H 0.099 0.901 16 C -0.182 4.182 17 N -0.449 5.449 18 Si 0.815 3.185 19 H -0.187 1.187 20 H -0.195 1.195 21 H -0.175 1.175 22 H 0.118 0.882 23 H 0.110 0.890 24 H 0.089 0.911 25 H 0.229 0.771 26 H 0.225 0.775 27 H 0.077 0.923 28 H 0.096 0.904 29 H 0.060 0.940 30 H 0.226 0.774 31 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 7.123 12.113 5.298 15.018 hybrid contribution 0.546 -0.600 -0.508 0.957 sum 7.669 11.513 4.790 14.639 Atomic orbital electron populations 1.20834 0.86967 1.04133 1.04422 1.22193 0.99256 0.88676 0.96091 1.68380 1.10392 1.28324 1.09949 1.24494 0.90108 1.01472 0.94470 1.24464 1.03563 0.87897 0.95635 1.68133 1.07988 1.31873 1.08577 1.22014 0.91286 0.95867 0.98194 1.19524 0.96082 0.84805 0.90453 0.90026 1.21995 1.01933 1.00617 0.95457 1.45881 1.14560 1.33358 1.46063 1.18503 0.85166 0.80269 0.81141 1.90532 1.19101 1.75121 1.66557 1.21377 0.96370 1.19268 1.24372 0.90052 1.26889 0.94770 0.99338 0.97206 1.70126 1.06547 1.32440 1.35789 0.85068 0.78764 0.77348 0.77321 1.18664 1.19515 1.17528 0.88209 0.89002 0.91145 0.77087 0.77543 0.92273 0.90421 0.93963 0.77396 0.91418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.82 9.54 71.24 0.68 -2.14 16 2 C 0.08 2.31 6.79 42.54 0.29 2.60 16 3 N -0.45 -12.10 10.42 -183.29 -1.91 -14.01 16 4 C 0.06 1.10 11.23 84.69 0.95 2.05 16 5 C 0.05 0.97 11.23 84.68 0.95 1.92 16 6 N -0.45 -13.88 9.75 -183.28 -1.79 -15.67 16 7 C 0.07 2.22 5.71 42.54 0.24 2.47 16 8 C 0.20 8.00 2.67 44.24 0.12 8.12 16 9 H 0.08 3.57 5.04 -2.39 -0.01 3.56 16 10 C -0.14 -5.20 9.47 71.98 0.68 -4.52 16 11 N -0.74 -35.48 5.05 -450.40 -2.28 -37.76 16 12 C 0.54 32.12 7.68 86.36 0.66 32.79 16 13 O -0.63 -41.47 14.77 -4.31 -0.06 -41.53 16 14 C -0.58 -33.54 9.53 24.83 0.24 -33.30 16 15 H 0.08 4.33 7.86 -2.91 -0.02 4.31 16 16 C 0.03 1.88 5.49 85.31 0.47 2.35 16 17 N -0.82 -50.21 11.91 21.83 0.26 -49.95 16 18 Si 1.00 41.56 29.56 68.60 2.03 43.59 16 19 H -0.26 -10.50 7.11 99.48 0.71 -9.80 16 20 H -0.27 -10.76 7.11 99.48 0.71 -10.05 16 21 H -0.25 -9.84 7.11 99.48 0.71 -9.13 16 22 H 0.10 2.25 8.14 -2.39 -0.02 2.23 16 23 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 24 H 0.07 2.16 6.21 -2.39 -0.01 2.15 16 25 H 0.21 2.12 8.06 -2.91 -0.02 2.09 16 26 H 0.21 2.58 8.06 -2.91 -0.02 2.56 16 27 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 28 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 29 H 0.04 1.79 8.14 -2.38 -0.02 1.77 16 30 H 0.39 17.49 8.05 -92.70 -0.75 16.74 16 31 H 0.28 15.27 8.29 -92.71 -0.77 14.50 16 Total: -1.00 -77.49 274.38 1.94 -75.55 By element: Atomic # 1 Polarization: 27.02 SS G_CDS: 0.41 Total: 27.44 kcal Atomic # 6 Polarization: 7.06 SS G_CDS: 5.28 Total: 12.34 kcal Atomic # 7 Polarization: -111.67 SS G_CDS: -5.71 Total: -117.38 kcal Atomic # 8 Polarization: -41.47 SS G_CDS: -0.06 Total: -41.53 kcal Atomic # 14 Polarization: 41.56 SS G_CDS: 2.03 Total: 43.59 kcal Total: -77.49 1.94 -75.55 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001336053453.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.609 kcal (2) G-P(sol) polarization free energy of solvation -77.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds