Wall clock time and date at job start Mon Mar 30 2020 17:36:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.32284 * 120.48964 * 2 1 4 4 C 1.31781 * 120.88704 * 180.02562 * 3 2 1 5 5 N 1.31805 * 121.92686 * 359.97438 * 4 3 2 6 6 C 1.32248 * 120.89455 * 0.02562 * 5 4 3 7 7 C 1.39210 * 120.48944 * 180.02562 * 2 1 3 8 8 N 1.39970 * 120.87422 * 359.97438 * 7 2 1 9 9 C 1.34777 * 120.00430 * 146.16175 * 8 7 2 10 10 O 1.21290 * 119.99414 * 4.11415 * 9 8 7 11 11 C 1.50697 * 120.00507 * 184.10834 * 9 8 7 12 12 H 1.09002 * 109.46968 * 300.00344 * 11 9 8 13 13 C 1.52999 * 109.47017 * 60.00147 * 11 9 8 14 14 C 1.50695 * 109.47149 * 180.02562 * 11 9 8 15 15 H 1.07998 * 120.00284 * 359.97438 * 14 11 9 16 16 C 1.37879 * 120.00094 * 180.02562 * 14 11 9 17 17 N 1.31518 * 119.99496 * 359.97438 * 16 14 11 18 18 Si 1.86798 * 120.00262 * 179.97438 * 16 14 11 19 19 H 1.48498 * 109.47103 * 59.99724 * 18 16 14 20 20 H 1.48500 * 109.47207 * 179.97438 * 18 16 14 21 21 H 1.48503 * 109.47059 * 299.99414 * 18 16 14 22 22 H 1.08993 * 109.47129 * 269.97704 * 1 2 3 23 23 H 1.08999 * 109.46833 * 29.98033 * 1 2 3 24 24 H 1.08995 * 109.46959 * 149.97428 * 1 2 3 25 25 H 1.08003 * 119.03337 * 180.02562 * 4 3 2 26 26 H 1.07998 * 120.49276 * 180.02562 * 6 5 4 27 27 H 0.97002 * 120.00064 * 326.16388 * 8 7 2 28 28 H 1.09006 * 109.46883 * 59.99804 * 13 11 9 29 29 H 1.09001 * 109.47177 * 180.02562 * 13 11 9 30 30 H 1.09007 * 109.47005 * 300.00030 * 13 11 9 31 31 H 0.97005 * 119.99897 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1782 1.1399 0.0000 4 6 3.4960 1.1491 -0.0005 5 7 4.2008 0.0353 -0.0005 6 6 3.6049 -1.1454 -0.0005 7 6 2.2134 -1.1996 -0.0005 8 7 1.5426 -2.4281 -0.0005 9 6 2.0702 -3.4841 -0.6509 10 8 3.1611 -3.3914 -1.1729 11 6 1.3049 -4.7799 -0.7295 12 1 1.1218 -5.1553 0.2773 13 6 -0.0313 -4.5410 -1.4356 14 6 2.1090 -5.7920 -1.5041 15 1 3.0772 -5.5237 -1.9002 16 6 1.6082 -7.0604 -1.7079 17 7 0.4289 -7.3869 -1.2259 18 14 2.6046 -8.3148 -2.6687 19 1 3.9012 -8.5469 -1.9832 20 1 1.8504 -9.5917 -2.7460 21 1 2.8543 -7.8031 -4.0402 22 1 -0.3633 -0.0004 1.0276 23 1 -0.3633 0.8902 -0.5135 24 1 -0.3633 -0.8897 -0.5142 25 1 4.0136 2.0970 -0.0001 26 1 4.1888 -2.0539 -0.0002 27 1 0.6979 -2.5195 0.4675 28 1 0.1519 -4.1655 -2.4424 29 1 -0.5851 -5.4782 -1.4920 30 1 -0.6127 -3.8090 -0.8749 31 1 0.0766 -8.2794 -1.3690 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001339248398.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:36:15 Heat of formation + Delta-G solvation = -15.678562 kcal Electronic energy + Delta-G solvation = -16254.139371 eV Core-core repulsion = 13534.746764 eV Total energy + Delta-G solvation = -2719.392607 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.40631 -40.59314 -36.52511 -35.88409 -35.19530 -32.95279 -31.56563 -29.31353 -27.22384 -25.90872 -24.20916 -23.68548 -21.46072 -19.30249 -18.66588 -17.92312 -17.74328 -17.34348 -16.59334 -16.19450 -15.70412 -15.03618 -14.78139 -14.49628 -14.13607 -13.89646 -13.56426 -13.30893 -12.99025 -12.79805 -12.60413 -12.43071 -12.29907 -12.04489 -12.03342 -11.52344 -11.08003 -10.75174 -10.49093 -10.21744 -9.47041 -8.17101 -6.27183 -0.18813 -0.03916 1.42686 1.42846 1.51254 1.69166 2.01218 2.44836 2.73112 3.08662 3.13661 3.26640 3.36218 3.78954 4.10003 4.38930 4.55786 4.70397 4.72655 4.79891 4.91258 4.99169 5.02141 5.17481 5.46552 5.51988 5.72954 5.88083 5.94891 6.16122 6.46514 6.80293 7.04111 7.20858 7.41991 8.88266 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.043933 B = 0.006251 C = 0.005604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 637.182165 B = 4478.050077 C = 4995.213476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.151 3.849 3 N -0.511 5.511 4 C 0.265 3.735 5 N -0.526 5.526 6 C 0.124 3.876 7 C 0.043 3.957 8 N -0.653 5.653 9 C 0.525 3.475 10 O -0.559 6.559 11 C 0.030 3.970 12 H 0.053 0.947 13 C -0.123 4.123 14 C -0.533 4.533 15 H 0.050 0.950 16 C 0.025 3.975 17 N -0.907 5.907 18 Si 0.952 3.048 19 H -0.277 1.277 20 H -0.275 1.275 21 H -0.278 1.278 22 H 0.111 0.889 23 H 0.096 0.904 24 H 0.086 0.914 25 H 0.230 0.770 26 H 0.159 0.841 27 H 0.428 0.572 28 H 0.023 0.977 29 H 0.073 0.927 30 H 0.059 0.941 31 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.303 12.970 4.523 14.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.001 3.999 3 N -0.225 5.225 4 C -0.023 4.023 5 N -0.241 5.241 6 C -0.043 4.043 7 C -0.057 4.057 8 N -0.301 5.301 9 C 0.316 3.684 10 O -0.435 6.435 11 C 0.009 3.991 12 H 0.071 0.929 13 C -0.181 4.181 14 C -0.571 4.571 15 H 0.068 0.932 16 C -0.175 4.175 17 N -0.546 5.546 18 Si 0.778 3.222 19 H -0.203 1.203 20 H -0.200 1.200 21 H -0.204 1.204 22 H 0.129 0.871 23 H 0.115 0.885 24 H 0.105 0.895 25 H 0.246 0.754 26 H 0.176 0.824 27 H 0.268 0.732 28 H 0.042 0.958 29 H 0.092 0.908 30 H 0.078 0.922 31 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -2.214 13.659 4.141 14.444 hybrid contribution 0.058 -1.780 -0.374 1.820 sum -2.157 11.879 3.767 12.647 Atomic orbital electron populations 1.20905 0.84830 1.05213 1.05434 1.22177 0.99358 0.86018 0.92368 1.68322 1.10666 1.28947 1.14583 1.25540 0.86913 0.97712 0.92136 1.68430 1.42176 0.98966 1.14480 1.23426 0.91772 0.96730 0.92392 1.19604 0.93897 0.88336 1.03902 1.43549 1.26144 1.07227 1.53153 1.22013 0.85901 0.85818 0.74657 1.90533 1.22645 1.83534 1.46834 1.18830 0.94123 0.87395 0.98738 0.92880 1.21614 0.96317 1.02152 0.98053 1.21233 1.03964 0.96705 1.35229 0.93164 1.25511 0.96046 0.99533 0.96441 1.69917 1.17726 1.20905 1.46030 0.85704 0.78893 0.78464 0.79130 1.20275 1.20007 1.20388 0.87118 0.88500 0.89527 0.75378 0.82353 0.73220 0.95814 0.90794 0.92195 0.92496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.83 9.73 71.24 0.69 -1.13 16 2 C 0.15 3.90 6.84 42.73 0.29 4.19 16 3 N -0.51 -13.37 10.37 -187.64 -1.95 -15.32 16 4 C 0.26 6.86 12.28 180.88 2.22 9.08 16 5 N -0.53 -16.85 10.43 -199.58 -2.08 -18.93 16 6 C 0.12 4.37 9.98 84.88 0.85 5.22 16 7 C 0.04 1.34 6.34 38.32 0.24 1.58 16 8 N -0.65 -20.46 4.69 -302.92 -1.42 -21.88 16 9 C 0.52 22.11 7.01 87.66 0.61 22.72 16 10 O -0.56 -27.61 12.91 -3.06 -0.04 -27.65 16 11 C 0.03 1.40 2.63 -12.29 -0.03 1.37 16 12 H 0.05 2.50 8.14 -2.39 -0.02 2.48 16 13 C -0.12 -5.09 8.87 71.98 0.64 -4.45 16 14 C -0.53 -29.24 8.38 25.60 0.21 -29.03 16 15 H 0.05 2.96 6.75 -2.91 -0.02 2.94 16 16 C 0.02 1.32 5.30 84.65 0.45 1.76 16 17 N -0.91 -48.48 11.32 21.45 0.24 -48.24 16 18 Si 0.95 43.51 29.54 68.60 2.03 45.53 16 19 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 20 H -0.28 -11.95 7.11 99.48 0.71 -11.25 16 21 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 22 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 23 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 24 H 0.09 1.43 7.27 -2.39 -0.02 1.41 16 25 H 0.23 3.91 8.06 -2.91 -0.02 3.89 16 26 H 0.16 6.29 6.27 -2.91 -0.02 6.27 16 27 H 0.43 10.25 7.49 -92.71 -0.69 9.55 16 28 H 0.02 0.99 8.14 -2.38 -0.02 0.97 16 29 H 0.07 3.44 6.07 -2.39 -0.01 3.43 16 30 H 0.06 1.87 7.66 -2.38 -0.02 1.85 16 31 H 0.27 13.56 8.31 -92.70 -0.77 12.79 16 Total: -1.00 -65.44 268.40 3.43 -62.02 By element: Atomic # 1 Polarization: 12.68 SS G_CDS: 0.47 Total: 13.15 kcal Atomic # 6 Polarization: 5.13 SS G_CDS: 6.18 Total: 11.31 kcal Atomic # 7 Polarization: -99.16 SS G_CDS: -5.21 Total: -104.36 kcal Atomic # 8 Polarization: -27.61 SS G_CDS: -0.04 Total: -27.65 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.53 kcal Total: -65.44 3.43 -62.02 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001339248398.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.338 kcal (2) G-P(sol) polarization free energy of solvation -65.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds