Wall clock time and date at job start Mon Mar 30 2020 17:36:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.31984 * 120.04954 * 2 1 4 4 C 1.32220 * 120.07448 * 180.27570 * 3 2 1 5 5 C 1.38259 * 120.16495 * 359.71351 * 4 3 2 6 6 N 1.32180 * 120.09337 * 0.02562 * 5 4 3 7 7 C 1.32629 * 119.92526 * 359.97406 * 6 5 4 8 8 N 1.39405 * 120.08220 * 180.02562 * 7 6 5 9 9 C 1.34777 * 120.00019 * 0.02562 * 8 7 6 10 10 O 1.21270 * 119.99936 * 359.97438 * 9 8 7 11 11 C 1.50706 * 119.99762 * 179.97438 * 9 8 7 12 12 H 1.09000 * 109.47161 * 59.99772 * 11 9 8 13 13 C 1.52997 * 109.47103 * 299.99738 * 11 9 8 14 14 C 1.50699 * 109.46817 * 179.97438 * 11 9 8 15 15 H 1.08003 * 119.99962 * 359.97438 * 14 11 9 16 16 C 1.37874 * 120.00270 * 180.02562 * 14 11 9 17 17 N 1.31522 * 119.99834 * 359.97438 * 16 14 11 18 18 Si 1.86793 * 120.00496 * 180.02562 * 16 14 11 19 19 H 1.48508 * 109.47141 * 359.97438 * 18 16 14 20 20 H 1.48501 * 109.47494 * 119.99680 * 18 16 14 21 21 H 1.48505 * 109.47047 * 239.99860 * 18 16 14 22 22 H 1.08996 * 109.47151 * 270.26484 * 1 2 3 23 23 H 1.09004 * 109.46987 * 30.26630 * 1 2 3 24 24 H 1.09003 * 109.47277 * 150.25788 * 1 2 3 25 25 H 1.08002 * 119.91724 * 179.69460 * 4 3 2 26 26 H 1.08000 * 119.95493 * 179.97438 * 5 4 3 27 27 H 0.97009 * 120.00131 * 179.72680 * 8 7 6 28 28 H 1.09001 * 109.47375 * 60.00064 * 13 11 9 29 29 H 1.09002 * 109.46777 * 180.02562 * 13 11 9 30 30 H 1.09000 * 109.47140 * 300.00046 * 13 11 9 31 31 H 0.96992 * 120.00032 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1679 1.1424 0.0000 4 6 3.4901 1.1430 -0.0055 5 6 4.1854 -0.0520 -0.0053 6 7 3.5302 -1.2000 -0.0001 7 6 2.2039 -1.2048 0.0054 8 7 1.5096 -2.4136 0.0114 9 6 2.1860 -3.5793 0.0122 10 8 3.3987 -3.5767 0.0071 11 6 1.4353 -4.8861 0.0193 12 1 0.8051 -4.9479 -0.8679 13 6 0.5612 -4.9653 1.2724 14 6 2.4172 -6.0294 0.0180 15 1 3.4786 -5.8297 0.0122 16 6 1.9606 -7.3303 0.0232 17 7 0.6680 -7.5735 0.0298 18 14 3.1775 -8.7474 0.0224 19 1 4.5622 -8.2108 0.0151 20 1 2.9736 -9.5758 1.2379 21 1 2.9643 -9.5823 -1.1871 22 1 -0.3633 0.0047 1.0276 23 1 -0.3633 0.8876 -0.5180 24 1 -0.3634 -0.8923 -0.5098 25 1 4.0283 2.0794 -0.0105 26 1 5.2654 -0.0476 -0.0102 27 1 0.5395 -2.4158 0.0195 28 1 -0.1490 -4.1384 1.2729 29 1 0.0186 -5.9107 1.2777 30 1 1.1915 -4.9035 2.1596 31 1 0.3468 -8.4887 0.0338 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001350217062.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:36:38 Heat of formation + Delta-G solvation = -5.718898 kcal Electronic energy + Delta-G solvation = -16243.405406 eV Core-core repulsion = 13524.444682 eV Total energy + Delta-G solvation = -2718.960724 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.37054 -40.42778 -36.35169 -35.85909 -35.39199 -32.98353 -31.77794 -28.91804 -27.24537 -26.06426 -24.09823 -23.69120 -21.39177 -19.52461 -18.48573 -18.10657 -17.18102 -16.85201 -16.66805 -16.41156 -15.55729 -15.40752 -14.93103 -14.51200 -13.77482 -13.73283 -13.57778 -13.14469 -12.98386 -12.77077 -12.64328 -12.50475 -12.38424 -12.19108 -12.03884 -11.43829 -11.07981 -10.83723 -10.50152 -9.74880 -9.30972 -8.17886 -6.28079 -0.18891 0.20035 1.38845 1.41291 1.54107 1.84825 1.89727 2.43743 2.82152 3.12268 3.24129 3.32824 3.41231 4.07553 4.20426 4.31618 4.44755 4.68686 4.71714 4.75863 4.89382 4.96775 5.06887 5.21952 5.44298 5.56113 5.71919 5.88368 6.09044 6.23942 6.53421 6.78892 6.95814 7.33419 7.44319 8.88154 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.044823 B = 0.006233 C = 0.005570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 624.526377 B = 4491.238030 C = 5025.496238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.045 3.955 3 N -0.429 5.429 4 C 0.019 3.981 5 C 0.065 3.935 6 N -0.484 5.484 7 C 0.294 3.706 8 N -0.649 5.649 9 C 0.510 3.490 10 O -0.519 6.519 11 C 0.029 3.971 12 H 0.050 0.950 13 C -0.123 4.123 14 C -0.531 4.531 15 H 0.047 0.953 16 C 0.023 3.977 17 N -0.908 5.908 18 Si 0.955 3.045 19 H -0.282 1.282 20 H -0.273 1.273 21 H -0.274 1.274 22 H 0.098 0.902 23 H 0.097 0.903 24 H 0.085 0.915 25 H 0.210 0.790 26 H 0.193 0.807 27 H 0.430 0.570 28 H 0.057 0.943 29 H 0.075 0.925 30 H 0.022 0.978 31 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.158 15.495 0.442 15.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.101 4.101 3 N -0.144 5.144 4 C -0.142 4.142 5 C -0.095 4.095 6 N -0.205 5.205 7 C 0.060 3.940 8 N -0.299 5.299 9 C 0.299 3.701 10 O -0.390 6.390 11 C 0.008 3.992 12 H 0.068 0.932 13 C -0.181 4.181 14 C -0.569 4.569 15 H 0.065 0.935 16 C -0.176 4.176 17 N -0.547 5.547 18 Si 0.781 3.219 19 H -0.207 1.207 20 H -0.198 1.198 21 H -0.199 1.199 22 H 0.116 0.884 23 H 0.116 0.884 24 H 0.104 0.896 25 H 0.226 0.774 26 H 0.210 0.790 27 H 0.272 0.728 28 H 0.076 0.924 29 H 0.094 0.906 30 H 0.041 0.959 31 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -1.445 15.200 0.438 15.275 hybrid contribution 0.462 -1.049 -0.045 1.147 sum -0.984 14.152 0.393 14.191 Atomic orbital electron populations 1.20789 0.85150 1.04964 1.04832 1.22169 0.99702 0.86700 1.01533 1.68286 1.09949 1.27420 1.08787 1.24148 0.90257 1.00713 0.99054 1.24240 1.03112 0.87407 0.94754 1.68463 1.07602 1.31655 1.12761 1.19748 0.89959 0.87802 0.96480 1.43967 1.11286 1.02702 1.71941 1.22097 0.88507 0.85968 0.73524 1.90618 1.15878 1.87198 1.45334 1.18864 0.95154 0.87420 0.97757 0.93189 1.21605 0.98189 1.02795 0.95475 1.21271 0.93059 0.91115 1.51471 0.93461 1.25542 0.97009 1.00636 0.94460 1.69932 1.13163 1.20883 1.50731 0.85552 0.79051 0.79178 0.78149 1.20702 1.19833 1.19890 0.88374 0.88425 0.89634 0.77366 0.79028 0.72797 0.92422 0.90596 0.95915 0.92455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.79 9.75 71.24 0.69 -1.10 16 2 C 0.04 1.21 6.81 42.76 0.29 1.50 16 3 N -0.43 -11.03 10.42 -182.80 -1.90 -12.93 16 4 C 0.02 0.41 11.21 84.64 0.95 1.36 16 5 C 0.07 1.79 11.22 84.65 0.95 2.74 16 6 N -0.48 -18.51 8.05 -192.43 -1.55 -20.05 16 7 C 0.29 10.18 7.41 132.87 0.98 11.17 16 8 N -0.65 -23.07 5.19 -308.15 -1.60 -24.67 16 9 C 0.51 23.79 7.11 87.66 0.62 24.41 16 10 O -0.52 -28.42 13.73 -3.00 -0.04 -28.46 16 11 C 0.03 1.45 2.64 -12.29 -0.03 1.42 16 12 H 0.05 2.50 8.14 -2.39 -0.02 2.49 16 13 C -0.12 -5.39 8.87 71.98 0.64 -4.75 16 14 C -0.53 -30.52 8.37 25.60 0.21 -30.31 16 15 H 0.05 2.94 6.75 -2.91 -0.02 2.92 16 16 C 0.02 1.28 5.30 84.65 0.45 1.73 16 17 N -0.91 -49.87 11.32 21.45 0.24 -49.63 16 18 Si 0.95 44.69 29.54 68.60 2.03 46.72 16 19 H -0.28 -13.60 7.11 99.48 0.71 -12.90 16 20 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 21 H -0.27 -12.28 7.11 99.48 0.71 -11.58 16 22 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 23 H 0.10 1.50 8.14 -2.38 -0.02 1.48 16 24 H 0.09 1.34 6.56 -2.39 -0.02 1.33 16 25 H 0.21 2.61 8.06 -2.91 -0.02 2.59 16 26 H 0.19 3.93 8.06 -2.91 -0.02 3.90 16 27 H 0.43 11.75 6.11 -92.70 -0.57 11.18 16 28 H 0.06 1.95 7.56 -2.39 -0.02 1.94 16 29 H 0.08 3.68 6.07 -2.39 -0.01 3.67 16 30 H 0.02 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.27 13.80 8.31 -92.71 -0.77 13.03 16 Total: -1.00 -73.44 268.32 3.53 -69.91 By element: Atomic # 1 Polarization: 10.37 SS G_CDS: 0.59 Total: 10.96 kcal Atomic # 6 Polarization: 2.40 SS G_CDS: 5.76 Total: 8.16 kcal Atomic # 7 Polarization: -102.47 SS G_CDS: -4.81 Total: -107.28 kcal Atomic # 8 Polarization: -28.42 SS G_CDS: -0.04 Total: -28.46 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.72 kcal Total: -73.44 3.53 -69.91 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350217062.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.189 kcal (2) G-P(sol) polarization free energy of solvation -73.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds