Wall clock time and date at job start Mon Mar 30 2020 17:36:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36881 * 119.99639 * 2 1 4 4 H 1.08004 * 119.99988 * 205.30714 * 3 2 1 5 5 C 1.39016 * 120.00284 * 25.30825 * 3 2 1 6 6 N 1.31388 * 119.99727 * 20.34558 * 5 3 2 7 7 Si 1.86803 * 120.00170 * 200.34659 * 5 3 2 8 8 H 1.48504 * 109.47065 * 0.02562 * 7 5 3 9 9 H 1.48506 * 109.46900 * 119.99727 * 7 5 3 10 10 H 1.48494 * 109.47281 * 240.00063 * 7 5 3 11 11 C 1.34768 * 120.00190 * 179.97438 * 2 1 3 12 12 O 1.21732 * 120.00127 * 184.31359 * 11 2 1 13 13 C 1.46631 * 120.00406 * 4.31559 * 11 2 1 14 14 C 1.36672 * 126.84969 * 353.71567 * 13 11 2 15 15 N 1.33153 * 107.79353 * 180.21426 * 14 13 11 16 16 C 1.31373 * 109.78306 * 359.71942 * 15 14 13 17 17 N 1.34315 * 108.99172 * 0.18952 * 16 15 14 18 18 C 1.46993 * 111.32928 * 180.02562 * 17 16 15 19 19 C 1.54402 * 105.48965 * 342.95574 * 18 17 16 20 20 C 1.51649 * 141.06385 * 179.86825 * 16 15 14 21 21 H 1.08997 * 109.47188 * 240.32057 * 1 2 3 22 22 H 1.09002 * 109.47146 * 0.32377 * 1 2 3 23 23 H 1.09001 * 109.46457 * 120.32605 * 1 2 3 24 24 H 0.97006 * 119.99469 * 179.97438 * 6 5 3 25 25 H 1.08003 * 126.09978 * 359.97438 * 14 13 11 26 26 H 1.08999 * 110.24517 * 223.94946 * 18 17 16 27 27 H 1.08996 * 110.24321 * 101.95531 * 18 17 16 28 28 H 1.09003 * 110.97863 * 267.52878 * 19 18 17 29 29 H 1.09001 * 110.98213 * 143.74070 * 19 18 17 30 30 H 1.09004 * 110.47955 * 315.58181 * 20 16 15 31 31 H 1.08993 * 110.48054 * 78.07555 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1493 1.1855 0.0000 4 1 3.1516 1.2304 -0.3998 5 6 1.5543 2.3316 0.5146 6 7 0.5400 2.2296 1.3435 7 14 2.1968 4.0167 0.0277 8 1 3.3367 3.8596 -0.9111 9 1 1.1135 4.7871 -0.6344 10 1 2.6505 4.7430 1.2408 11 6 2.1389 -1.1671 0.0005 12 8 3.3536 -1.1685 0.0798 13 6 1.4090 -2.4353 -0.0945 14 6 0.0530 -2.6044 -0.0693 15 7 -0.1965 -3.9079 -0.1772 16 6 0.9337 -4.5704 -0.2753 17 7 1.9558 -3.7002 -0.2285 18 6 3.2499 -4.3893 -0.3350 19 6 2.9540 -5.8725 -0.0243 20 6 1.4639 -5.9840 -0.4177 21 1 -0.3633 -0.5088 0.8928 22 1 -0.3633 1.0277 -0.0058 23 1 -0.3632 -0.5189 -0.8871 24 1 0.1251 3.0294 1.7029 25 1 -0.6844 -1.8210 0.0254 26 1 3.9536 -3.9847 0.3924 27 1 3.6492 -4.2878 -1.3441 28 1 3.0946 -6.0848 1.0355 29 1 3.5701 -6.5302 -0.6376 30 1 0.9397 -6.6580 0.2599 31 1 1.3643 -6.3267 -1.4475 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001350612918.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:36:45 Heat of formation + Delta-G solvation = 61.290803 kcal Electronic energy + Delta-G solvation = -16596.243429 eV Core-core repulsion = 13880.188464 eV Total energy + Delta-G solvation = -2716.054965 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.01359 -38.24235 -36.10944 -34.77617 -31.88573 -31.38892 -28.73181 -27.28105 -26.24535 -24.71945 -22.01813 -21.52334 -19.98265 -18.74652 -17.11719 -16.54362 -16.07226 -15.29651 -14.67869 -14.31569 -13.99899 -13.65670 -13.39914 -13.31149 -13.15064 -12.51752 -12.26730 -11.79298 -11.56935 -11.49069 -11.26671 -11.10225 -10.66662 -10.38903 -10.25428 -9.68785 -9.18035 -9.05235 -8.55697 -7.84559 -7.72368 -6.46624 -3.96495 2.04928 3.00863 3.11734 3.21544 3.28831 3.40025 4.01758 4.08310 4.28995 4.46891 4.71703 4.77891 4.93450 5.05317 5.45540 5.47011 5.59578 5.65193 5.69181 5.86775 5.88576 6.04562 6.33507 6.58410 6.70170 7.11710 7.20937 7.41662 7.47471 8.06056 8.37391 8.47973 9.06226 9.27898 9.88765 10.57135 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.051599 B = 0.006719 C = 0.006090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 542.517435 B = 4166.133104 C = 4596.545762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.418 5.418 3 C -0.303 4.303 4 H 0.101 0.899 5 C 0.031 3.969 6 N -0.864 5.864 7 Si 0.927 3.073 8 H -0.266 1.266 9 H -0.278 1.278 10 H -0.280 1.280 11 C 0.504 3.496 12 O -0.598 6.598 13 C -0.018 4.018 14 C -0.010 4.010 15 N -0.487 5.487 16 C 0.171 3.829 17 N -0.448 5.448 18 C 0.105 3.895 19 C -0.130 4.130 20 C -0.036 4.036 21 H 0.052 0.948 22 H 0.105 0.895 23 H 0.038 0.962 24 H 0.271 0.729 25 H 0.202 0.798 26 H 0.095 0.905 27 H 0.087 0.913 28 H 0.086 0.914 29 H 0.099 0.901 30 H 0.094 0.906 31 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.248 -11.462 -3.207 11.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.135 5.135 3 C -0.431 4.431 4 H 0.119 0.881 5 C -0.173 4.173 6 N -0.502 5.502 7 Si 0.753 3.247 8 H -0.191 1.191 9 H -0.203 1.203 10 H -0.206 1.206 11 C 0.293 3.707 12 O -0.485 6.485 13 C -0.134 4.134 14 C -0.162 4.162 15 N -0.207 5.207 16 C -0.090 4.090 17 N -0.131 5.131 18 C -0.016 4.016 19 C -0.168 4.168 20 C -0.075 4.075 21 H 0.070 0.930 22 H 0.123 0.877 23 H 0.057 0.943 24 H 0.081 0.919 25 H 0.218 0.782 26 H 0.114 0.886 27 H 0.105 0.895 28 H 0.104 0.896 29 H 0.117 0.883 30 H 0.112 0.888 31 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 0.178 -11.530 -3.066 11.932 hybrid contribution 0.894 1.291 -0.027 1.570 sum 1.072 -10.239 -3.093 10.750 Atomic orbital electron populations 1.22254 0.81553 1.05344 0.97810 1.43224 1.05525 1.04022 1.60695 1.19708 1.01660 0.83506 1.38208 0.88110 1.25404 0.96945 1.00478 0.94512 1.69994 1.23683 1.30308 1.26192 0.85852 0.79013 0.81077 0.78722 1.19058 1.20341 1.20590 1.16768 0.86840 0.81887 0.85202 1.90619 1.13539 1.86901 1.57404 1.21105 0.93405 0.85470 1.13434 1.23820 0.93380 0.93321 1.05651 1.69676 1.25538 1.04823 1.20653 1.24325 0.84530 0.93593 1.06592 1.46046 1.08930 1.06079 1.52021 1.22332 0.84168 0.91251 1.03893 1.22764 0.95869 0.94753 1.03458 1.20601 0.94203 0.89219 1.03507 0.92968 0.87651 0.94345 0.91861 0.78216 0.88640 0.89464 0.89572 0.88271 0.88751 0.88908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.68 7.55 59.85 0.45 2.13 16 2 N -0.42 -11.14 2.99 -123.70 -0.37 -11.51 16 3 C -0.30 -8.49 9.16 -15.01 -0.14 -8.63 16 4 H 0.10 2.94 7.55 -52.48 -0.40 2.55 16 5 C 0.03 0.82 4.86 -17.45 -0.08 0.73 16 6 N -0.86 -22.82 11.03 55.50 0.61 -22.21 16 7 Si 0.93 20.24 29.60 -169.99 -5.03 15.21 16 8 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 9 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 10 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 11 C 0.50 13.43 7.59 -12.88 -0.10 13.33 16 12 O -0.60 -17.49 16.86 5.16 0.09 -17.40 16 13 C -0.02 -0.41 7.03 -82.05 -0.58 -0.99 16 14 C -0.01 -0.21 9.84 -17.54 -0.17 -0.39 16 15 N -0.49 -9.77 11.21 -10.25 -0.11 -9.89 16 16 C 0.17 3.02 8.56 -154.87 -1.33 1.69 16 17 N -0.45 -8.68 3.64 -108.27 -0.39 -9.08 16 18 C 0.11 1.53 7.78 -3.04 -0.02 1.50 16 19 C -0.13 -1.24 7.18 -25.20 -0.18 -1.42 16 20 C -0.04 -0.40 6.86 -26.62 -0.18 -0.59 16 21 H 0.05 1.15 6.59 -51.93 -0.34 0.80 16 22 H 0.11 2.51 5.50 -51.93 -0.29 2.23 16 23 H 0.04 0.77 6.43 -51.93 -0.33 0.44 16 24 H 0.27 6.66 8.31 -40.82 -0.34 6.32 16 25 H 0.20 3.87 4.10 -52.48 -0.21 3.66 16 26 H 0.10 1.48 8.14 -51.93 -0.42 1.05 16 27 H 0.09 1.17 8.14 -51.93 -0.42 0.74 16 28 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 260.41 15.07 3.92 3.92 Total: -1.00 -34.05 260.41 -6.86 -40.91 By element: Atomic # 1 Polarization: 5.90 SS G_CDS: -3.24 Total: 2.66 kcal Atomic # 6 Polarization: 9.71 SS G_CDS: -2.33 Total: 7.38 kcal Atomic # 7 Polarization: -52.41 SS G_CDS: -0.27 Total: -52.68 kcal Atomic # 8 Polarization: -17.49 SS G_CDS: 0.09 Total: -17.40 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -5.03 Total: 15.21 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -34.05 -6.86 -40.91 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350612918.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.202 kcal (2) G-P(sol) polarization free energy of solvation -34.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.911 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds