Wall clock time and date at job start Mon Mar 30 2020 17:36:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36881 * 119.99639 * 2 1 4 4 H 1.08004 * 119.99988 * 205.30714 * 3 2 1 5 5 C 1.39016 * 120.00284 * 25.30825 * 3 2 1 6 6 N 1.31388 * 119.99727 * 20.34558 * 5 3 2 7 7 Si 1.86803 * 120.00170 * 200.34659 * 5 3 2 8 8 H 1.48504 * 109.47065 * 0.02562 * 7 5 3 9 9 H 1.48506 * 109.46900 * 119.99727 * 7 5 3 10 10 H 1.48494 * 109.47281 * 240.00063 * 7 5 3 11 11 C 1.34768 * 120.00190 * 179.97438 * 2 1 3 12 12 O 1.21732 * 120.00127 * 184.31359 * 11 2 1 13 13 C 1.46631 * 120.00406 * 4.31559 * 11 2 1 14 14 C 1.36672 * 126.84969 * 353.71567 * 13 11 2 15 15 N 1.33153 * 107.79353 * 180.21426 * 14 13 11 16 16 C 1.31373 * 109.78306 * 359.71942 * 15 14 13 17 17 N 1.34315 * 108.99172 * 0.18952 * 16 15 14 18 18 C 1.46993 * 111.32928 * 180.02562 * 17 16 15 19 19 C 1.54402 * 105.48965 * 342.95574 * 18 17 16 20 20 C 1.51649 * 141.06385 * 179.86825 * 16 15 14 21 21 H 1.08997 * 109.47188 * 240.32057 * 1 2 3 22 22 H 1.09002 * 109.47146 * 0.32377 * 1 2 3 23 23 H 1.09001 * 109.46457 * 120.32605 * 1 2 3 24 24 H 0.97006 * 119.99469 * 179.97438 * 6 5 3 25 25 H 1.08003 * 126.09978 * 359.97438 * 14 13 11 26 26 H 1.08999 * 110.24517 * 223.94946 * 18 17 16 27 27 H 1.08996 * 110.24321 * 101.95531 * 18 17 16 28 28 H 1.09003 * 110.97863 * 267.52878 * 19 18 17 29 29 H 1.09001 * 110.98213 * 143.74070 * 19 18 17 30 30 H 1.09004 * 110.47955 * 315.58181 * 20 16 15 31 31 H 1.08993 * 110.48054 * 78.07555 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1493 1.1855 0.0000 4 1 3.1516 1.2304 -0.3998 5 6 1.5543 2.3316 0.5146 6 7 0.5400 2.2296 1.3435 7 14 2.1968 4.0167 0.0277 8 1 3.3367 3.8596 -0.9111 9 1 1.1135 4.7871 -0.6344 10 1 2.6505 4.7430 1.2408 11 6 2.1389 -1.1671 0.0005 12 8 3.3536 -1.1685 0.0798 13 6 1.4090 -2.4353 -0.0945 14 6 0.0530 -2.6044 -0.0693 15 7 -0.1965 -3.9079 -0.1772 16 6 0.9337 -4.5704 -0.2753 17 7 1.9558 -3.7002 -0.2285 18 6 3.2499 -4.3893 -0.3350 19 6 2.9540 -5.8725 -0.0243 20 6 1.4639 -5.9840 -0.4177 21 1 -0.3633 -0.5088 0.8928 22 1 -0.3633 1.0277 -0.0058 23 1 -0.3632 -0.5189 -0.8871 24 1 0.1251 3.0294 1.7029 25 1 -0.6844 -1.8210 0.0254 26 1 3.9536 -3.9847 0.3924 27 1 3.6492 -4.2878 -1.3441 28 1 3.0946 -6.0848 1.0355 29 1 3.5701 -6.5302 -0.6376 30 1 0.9397 -6.6580 0.2599 31 1 1.3643 -6.3267 -1.4475 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001350612918.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:36:44 Heat of formation + Delta-G solvation = 37.839203 kcal Electronic energy + Delta-G solvation = -16597.260367 eV Core-core repulsion = 13880.188464 eV Total energy + Delta-G solvation = -2717.071903 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -43.47665 -40.19427 -37.40238 -36.76605 -33.90478 -32.73868 -30.30066 -28.55261 -28.05881 -26.63572 -23.33160 -23.06214 -21.41189 -20.33113 -19.15369 -18.02036 -17.59003 -17.15371 -16.37813 -16.07149 -15.73731 -15.21821 -14.75807 -14.66286 -14.27314 -14.18574 -13.74542 -13.46838 -13.39493 -13.02077 -12.59396 -12.49319 -12.16098 -12.10235 -11.96197 -11.31403 -11.03181 -10.63756 -10.56091 -9.76054 -9.42451 -8.47756 -6.08746 0.42253 1.38670 1.40513 1.54043 1.66053 1.87030 2.25563 2.37481 2.84497 3.01518 3.02517 3.52410 3.77260 3.88914 3.96089 4.33671 4.44582 4.50394 4.53116 4.56622 4.75749 4.83945 4.97012 5.12197 5.18712 5.23463 5.37071 5.63162 6.01228 6.04182 6.36395 6.92075 7.02823 7.25810 7.86241 8.55993 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.051599 B = 0.006719 C = 0.006090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 542.517435 B = 4166.133104 C = 4596.545762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.432 5.432 3 C -0.348 4.348 4 H 0.074 0.926 5 C 0.002 3.998 6 N -0.881 5.881 7 Si 0.997 3.003 8 H -0.272 1.272 9 H -0.258 1.258 10 H -0.274 1.274 11 C 0.493 3.507 12 O -0.642 6.642 13 C -0.068 4.068 14 C 0.004 3.996 15 N -0.514 5.514 16 C 0.191 3.809 17 N -0.460 5.460 18 C 0.088 3.912 19 C -0.107 4.107 20 C -0.034 4.034 21 H 0.056 0.944 22 H 0.094 0.906 23 H 0.063 0.937 24 H 0.281 0.719 25 H 0.208 0.792 26 H 0.075 0.925 27 H 0.095 0.905 28 H 0.096 0.904 29 H 0.145 0.855 30 H 0.122 0.878 31 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.279 -13.219 -3.661 13.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.148 5.148 3 C -0.475 4.475 4 H 0.092 0.908 5 C -0.201 4.201 6 N -0.518 5.518 7 Si 0.819 3.181 8 H -0.196 1.196 9 H -0.183 1.183 10 H -0.199 1.199 11 C 0.284 3.716 12 O -0.532 6.532 13 C -0.184 4.184 14 C -0.149 4.149 15 N -0.234 5.234 16 C -0.072 4.072 17 N -0.142 5.142 18 C -0.033 4.033 19 C -0.145 4.145 20 C -0.073 4.073 21 H 0.074 0.926 22 H 0.112 0.888 23 H 0.082 0.918 24 H 0.091 0.909 25 H 0.225 0.775 26 H 0.093 0.907 27 H 0.113 0.887 28 H 0.114 0.886 29 H 0.163 0.837 30 H 0.140 0.860 31 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -0.374 -13.298 -3.513 13.759 hybrid contribution 1.047 1.715 0.135 2.014 sum 0.673 -11.583 -3.378 12.084 Atomic orbital electron populations 1.22256 0.79613 1.04901 0.99115 1.43459 1.06852 1.03851 1.60590 1.19674 1.01687 0.85257 1.40904 0.90818 1.26238 0.96882 1.03485 0.93518 1.70041 1.24020 1.31886 1.25847 0.84842 0.78678 0.76143 0.78390 1.19647 1.18258 1.19894 1.17328 0.86670 0.83268 0.84367 1.90549 1.15403 1.87848 1.59443 1.20683 0.94105 0.85634 1.17930 1.23947 0.92744 0.94346 1.03826 1.69731 1.26827 1.04269 1.22589 1.25750 0.83383 0.96076 1.02012 1.46446 1.11151 1.05155 1.51484 1.22796 0.82344 0.94182 1.03947 1.22864 0.95340 0.91163 1.05137 1.21044 0.94716 0.85334 1.06167 0.92608 0.88796 0.91850 0.90907 0.77541 0.90692 0.88680 0.88587 0.83682 0.86019 0.85895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 3.89 7.55 127.77 0.96 4.85 16 2 N -0.43 -24.03 2.99 -663.50 -1.99 -26.01 16 3 C -0.35 -20.38 9.16 84.09 0.77 -19.61 16 4 H 0.07 4.60 7.55 -2.91 -0.02 4.58 16 5 C 0.00 0.12 4.86 84.95 0.41 0.53 16 6 N -0.88 -46.84 11.03 21.68 0.24 -46.60 16 7 Si 1.00 41.80 29.60 68.60 2.03 43.83 16 8 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 9 H -0.26 -9.99 7.11 99.48 0.71 -9.28 16 10 H -0.27 -11.15 7.11 99.48 0.71 -10.45 16 11 C 0.49 27.61 7.59 86.43 0.66 28.27 16 12 O -0.64 -39.91 16.86 -4.45 -0.08 -39.98 16 13 C -0.07 -3.17 7.03 39.92 0.28 -2.89 16 14 C 0.00 0.16 9.84 84.13 0.83 0.99 16 15 N -0.51 -19.98 11.21 -186.34 -2.09 -22.06 16 16 C 0.19 6.29 8.56 138.41 1.19 7.48 16 17 N -0.46 -17.66 3.64 -496.46 -1.81 -19.47 16 18 C 0.09 2.44 7.78 86.76 0.68 3.12 16 19 C -0.11 -1.57 7.18 31.59 0.23 -1.35 16 20 C -0.03 -0.59 6.86 30.67 0.21 -0.38 16 21 H 0.06 2.51 6.59 -2.39 -0.02 2.49 16 22 H 0.09 4.56 5.50 -2.39 -0.01 4.55 16 23 H 0.06 2.58 6.43 -2.39 -0.02 2.56 16 24 H 0.28 13.65 8.31 -92.70 -0.77 12.88 16 25 H 0.21 8.05 4.10 -2.91 -0.01 8.04 16 26 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 27 H 0.10 2.44 8.14 -2.39 -0.02 2.43 16 28 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 29 H 0.15 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.12 1.61 8.14 -2.39 -0.02 1.59 16 31 H 0.12 1.56 8.14 -2.39 -0.02 1.54 16 Total: -1.00 -78.36 260.41 3.68 -74.69 By element: Atomic # 1 Polarization: 13.44 SS G_CDS: 1.16 Total: 14.59 kcal Atomic # 6 Polarization: 14.81 SS G_CDS: 6.21 Total: 21.02 kcal Atomic # 7 Polarization: -108.50 SS G_CDS: -5.64 Total: -114.14 kcal Atomic # 8 Polarization: -39.91 SS G_CDS: -0.08 Total: -39.98 kcal Atomic # 14 Polarization: 41.80 SS G_CDS: 2.03 Total: 43.83 kcal Total: -78.36 3.68 -74.69 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350612918.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.526 kcal (2) G-P(sol) polarization free energy of solvation -78.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.687 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds