Wall clock time and date at job start Mon Mar 30 2020 17:37:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46501 * 109.46987 * 2 1 4 4 C 1.38984 * 119.99941 * 179.97438 * 3 2 1 5 5 C 1.39287 * 119.61214 * 359.97438 * 4 3 2 6 6 C 1.38115 * 119.19512 * 179.97438 * 5 4 3 7 7 C 1.39659 * 118.43539 * 0.02562 * 6 5 4 8 8 N 1.39539 * 120.42236 * 179.97438 * 7 6 5 9 9 C 1.34773 * 119.99656 * 325.00758 * 8 7 6 10 10 O 1.21791 * 120.00312 * 4.67498 * 9 8 7 11 11 C 1.41732 * 119.99741 * 184.66804 * 9 8 7 12 12 H 1.07997 * 120.00004 * 0.02562 * 11 9 8 13 13 C 1.40138 * 119.99913 * 180.02562 * 11 9 8 14 14 N 1.30633 * 119.99921 * 359.97438 * 13 11 9 15 15 Si 1.86796 * 119.99990 * 180.02562 * 13 11 9 16 16 H 1.48503 * 109.47198 * 60.00000 * 15 13 11 17 17 H 1.48500 * 109.47307 * 179.97438 * 15 13 11 18 18 H 1.48491 * 109.47163 * 299.99733 * 15 13 11 19 19 C 1.38961 * 119.15925 * 359.97438 * 7 6 5 20 20 N 1.31863 * 120.72122 * 359.72816 * 19 7 6 21 21 H 1.08995 * 109.47138 * 300.00683 * 1 2 3 22 22 H 1.09003 * 109.46632 * 60.00322 * 1 2 3 23 23 H 1.09000 * 109.46772 * 180.02562 * 1 2 3 24 24 H 1.08995 * 109.47596 * 239.99591 * 2 1 3 25 25 H 1.09003 * 109.47091 * 119.99406 * 2 1 3 26 26 H 0.97002 * 119.99999 * 359.97438 * 3 2 1 27 27 H 1.07999 * 120.40016 * 359.97438 * 5 4 3 28 28 H 1.08004 * 120.77972 * 180.02562 * 6 5 4 29 29 H 0.96996 * 119.99606 * 145.01034 * 8 7 6 30 30 H 0.97003 * 119.99548 * 179.97438 * 14 13 11 31 31 H 1.07996 * 119.63930 * 179.97438 * 19 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 3.3848 1.6352 0.0005 5 6 4.2827 0.5704 0.0016 6 6 5.6388 0.8327 0.0016 7 6 6.0585 2.1647 0.0011 8 7 7.4185 2.4771 0.0016 9 6 8.2888 1.6963 0.6718 10 8 7.9021 0.6722 1.2056 11 6 9.6543 2.0670 0.7553 12 1 9.9971 2.9752 0.2822 13 6 10.5594 1.2549 1.4517 14 7 10.1446 0.1565 2.0244 15 14 12.3589 1.7438 1.5624 16 1 12.4728 3.0643 2.2322 17 1 13.1012 0.7253 2.3478 18 1 12.9331 1.8307 0.1958 19 6 5.1045 3.1752 0.0000 20 7 3.8178 2.8869 -0.0059 21 1 -0.3633 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3633 -1.0277 0.0005 24 1 1.8934 -0.5139 -0.8899 25 1 1.8934 -0.5138 0.8901 26 1 1.3880 2.1185 -0.0004 27 1 3.9230 -0.4479 0.0025 28 1 6.3576 0.0266 0.0020 29 1 7.7373 3.2561 -0.4804 30 1 10.7712 -0.4058 2.5062 31 1 5.4204 4.2079 0.0000 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001522317057.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:37:00 Heat of formation + Delta-G solvation = -0.257340 kcal Electronic energy + Delta-G solvation = -15759.794111 eV Core-core repulsion = 13041.070219 eV Total energy + Delta-G solvation = -2718.723893 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.74894 -37.67271 -35.86344 -33.52239 -32.39134 -31.32715 -30.62234 -27.79903 -26.05284 -23.66916 -22.58006 -21.48468 -19.86012 -17.75938 -17.04923 -16.14364 -15.85952 -15.41334 -15.08816 -14.32760 -14.11526 -13.81422 -13.38578 -12.91154 -12.66044 -12.36453 -12.11413 -11.85997 -11.70695 -11.65605 -11.28830 -11.09179 -10.61749 -10.36608 -10.00089 -9.20554 -8.99798 -8.95459 -8.27113 -7.64586 -6.58334 -6.34806 -4.87604 1.90741 2.21642 3.08185 3.13457 3.15310 3.49089 3.99879 4.35510 4.62179 4.77717 4.91859 5.01029 5.23107 5.24120 5.59023 5.66721 5.77192 5.78780 5.83615 5.86368 5.96951 6.31779 6.65680 6.97745 7.07589 7.25510 7.48447 7.88355 7.92906 8.06085 8.24161 8.73826 8.82346 9.34260 10.40855 10.62041 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.063148 B = 0.004908 C = 0.004613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 443.294959 B = 5703.607141 C = 6068.212368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.128 3.872 3 N -0.738 5.738 4 C 0.353 3.647 5 C -0.216 4.216 6 C -0.047 4.047 7 C 0.092 3.908 8 N -0.698 5.698 9 C 0.546 3.454 10 O -0.572 6.572 11 C -0.539 4.539 12 H 0.070 0.930 13 C 0.088 3.912 14 N -0.749 5.749 15 Si 0.913 3.087 16 H -0.266 1.266 17 H -0.279 1.279 18 H -0.266 1.266 19 C 0.084 3.916 20 N -0.529 5.529 21 H 0.060 0.940 22 H 0.060 0.940 23 H 0.071 0.929 24 H 0.057 0.943 25 H 0.058 0.942 26 H 0.397 0.603 27 H 0.122 0.878 28 H 0.151 0.849 29 H 0.391 0.609 30 H 0.273 0.727 31 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.246 1.173 -4.367 12.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.003 3.997 3 N -0.376 5.376 4 C 0.118 3.882 5 C -0.241 4.241 6 C -0.075 4.075 7 C -0.010 4.010 8 N -0.343 5.343 9 C 0.355 3.645 10 O -0.456 6.456 11 C -0.575 4.575 12 H 0.088 0.912 13 C -0.134 4.134 14 N -0.377 5.377 15 Si 0.737 3.263 16 H -0.191 1.191 17 H -0.204 1.204 18 H -0.191 1.191 19 C -0.076 4.076 20 N -0.246 5.246 21 H 0.079 0.921 22 H 0.079 0.921 23 H 0.090 0.910 24 H 0.075 0.925 25 H 0.076 0.924 26 H 0.232 0.768 27 H 0.140 0.860 28 H 0.168 0.832 29 H 0.224 0.776 30 H 0.083 0.917 31 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -11.980 0.725 -3.840 12.601 hybrid contribution 1.436 0.267 -0.085 1.463 sum -10.543 0.992 -3.924 11.294 Atomic orbital electron populations 1.21957 0.94824 1.02751 1.02444 1.21196 0.94030 0.83303 1.01174 1.44166 1.02681 1.06860 1.83846 1.18177 0.85033 0.89264 0.95686 1.21301 0.93205 0.98453 1.11098 1.21726 0.94885 0.97057 0.93876 1.18753 0.86533 0.93648 1.02055 1.43891 1.03426 1.32002 1.54932 1.17031 0.85950 0.83161 0.78391 1.90623 1.78748 1.25964 1.50236 1.20005 0.92377 1.09568 1.35543 0.91211 1.25757 1.00596 0.93815 0.93270 1.70006 1.35722 1.09432 1.22510 0.86344 0.81735 0.79116 0.79117 1.19070 1.20395 1.19064 1.22130 0.86514 0.98416 1.00532 1.66905 1.17439 1.20018 1.20243 0.92084 0.92122 0.91050 0.92466 0.92383 0.76848 0.85996 0.83152 0.77564 0.91656 0.83497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.26 10.03 37.16 0.37 -0.89 16 2 C 0.13 1.38 5.61 -4.04 -0.02 1.36 16 3 N -0.74 -10.21 5.73 -60.37 -0.35 -10.55 16 4 C 0.35 6.30 7.65 -154.94 -1.19 5.11 16 5 C -0.22 -4.02 9.32 -39.24 -0.37 -4.38 16 6 C -0.05 -1.02 8.79 -39.10 -0.34 -1.37 16 7 C 0.09 1.99 6.32 -83.55 -0.53 1.46 16 8 N -0.70 -15.80 5.32 -12.30 -0.07 -15.87 16 9 C 0.55 15.15 7.43 -14.93 -0.11 15.04 16 10 O -0.57 -17.77 12.34 5.11 0.06 -17.71 16 11 C -0.54 -14.67 9.31 -37.54 -0.35 -15.02 16 12 H 0.07 1.71 7.85 -52.49 -0.41 1.30 16 13 C 0.09 2.37 5.50 -17.35 -0.10 2.28 16 14 N -0.75 -21.59 11.73 55.56 0.65 -20.93 16 15 Si 0.91 19.32 29.56 -169.99 -5.02 14.30 16 16 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 17 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 18 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 19 C 0.08 1.59 11.12 -17.27 -0.19 1.40 16 20 N -0.53 -9.98 10.38 -12.18 -0.13 -10.11 16 21 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 22 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 23 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 24 H 0.06 0.61 7.92 -51.93 -0.41 0.20 16 25 H 0.06 0.65 7.92 -51.93 -0.41 0.24 16 26 H 0.40 4.98 8.60 -40.82 -0.35 4.63 16 27 H 0.12 1.97 6.69 -52.49 -0.35 1.62 16 28 H 0.15 3.66 6.31 -52.48 -0.33 3.33 16 29 H 0.39 7.53 8.78 -40.82 -0.36 7.17 16 30 H 0.27 7.11 8.29 -40.82 -0.34 6.77 16 31 H 0.15 2.39 8.06 -52.49 -0.42 1.97 16 LS Contribution 272.30 15.07 4.10 4.10 Total: -1.00 -32.98 272.30 -7.02 -40.00 By element: Atomic # 1 Polarization: 15.24 SS G_CDS: -3.45 Total: 11.79 kcal Atomic # 6 Polarization: 7.80 SS G_CDS: -2.82 Total: 4.98 kcal Atomic # 7 Polarization: -57.58 SS G_CDS: 0.11 Total: -57.46 kcal Atomic # 8 Polarization: -17.77 SS G_CDS: 0.06 Total: -17.71 kcal Atomic # 14 Polarization: 19.32 SS G_CDS: -5.02 Total: 14.30 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -32.98 -7.02 -40.00 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001522317057.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.738 kcal (2) G-P(sol) polarization free energy of solvation -32.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds