Wall clock time and date at job start Mon Mar 30 2020 17:36:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46501 * 109.46987 * 2 1 4 4 C 1.38984 * 119.99941 * 179.97438 * 3 2 1 5 5 C 1.39287 * 119.61214 * 359.97438 * 4 3 2 6 6 C 1.38115 * 119.19512 * 179.97438 * 5 4 3 7 7 C 1.39659 * 118.43539 * 0.02562 * 6 5 4 8 8 N 1.39539 * 120.42236 * 179.97438 * 7 6 5 9 9 C 1.34773 * 119.99656 * 325.00758 * 8 7 6 10 10 O 1.21791 * 120.00312 * 4.67498 * 9 8 7 11 11 C 1.41732 * 119.99741 * 184.66804 * 9 8 7 12 12 H 1.07997 * 120.00004 * 0.02562 * 11 9 8 13 13 C 1.40138 * 119.99913 * 180.02562 * 11 9 8 14 14 N 1.30633 * 119.99921 * 359.97438 * 13 11 9 15 15 Si 1.86796 * 119.99990 * 180.02562 * 13 11 9 16 16 H 1.48503 * 109.47198 * 60.00000 * 15 13 11 17 17 H 1.48500 * 109.47307 * 179.97438 * 15 13 11 18 18 H 1.48491 * 109.47163 * 299.99733 * 15 13 11 19 19 C 1.38961 * 119.15925 * 359.97438 * 7 6 5 20 20 N 1.31863 * 120.72122 * 359.72816 * 19 7 6 21 21 H 1.08995 * 109.47138 * 300.00683 * 1 2 3 22 22 H 1.09003 * 109.46632 * 60.00322 * 1 2 3 23 23 H 1.09000 * 109.46772 * 180.02562 * 1 2 3 24 24 H 1.08995 * 109.47596 * 239.99591 * 2 1 3 25 25 H 1.09003 * 109.47091 * 119.99406 * 2 1 3 26 26 H 0.97002 * 119.99999 * 359.97438 * 3 2 1 27 27 H 1.07999 * 120.40016 * 359.97438 * 5 4 3 28 28 H 1.08004 * 120.77972 * 180.02562 * 6 5 4 29 29 H 0.96996 * 119.99606 * 145.01034 * 8 7 6 30 30 H 0.97003 * 119.99548 * 179.97438 * 14 13 11 31 31 H 1.07996 * 119.63930 * 179.97438 * 19 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 3.3848 1.6352 0.0005 5 6 4.2827 0.5704 0.0016 6 6 5.6388 0.8327 0.0016 7 6 6.0585 2.1647 0.0011 8 7 7.4185 2.4771 0.0016 9 6 8.2888 1.6963 0.6718 10 8 7.9021 0.6722 1.2056 11 6 9.6543 2.0670 0.7553 12 1 9.9971 2.9752 0.2822 13 6 10.5594 1.2549 1.4517 14 7 10.1446 0.1565 2.0244 15 14 12.3589 1.7438 1.5624 16 1 12.4728 3.0643 2.2322 17 1 13.1012 0.7253 2.3478 18 1 12.9331 1.8307 0.1958 19 6 5.1045 3.1752 0.0000 20 7 3.8178 2.8869 -0.0059 21 1 -0.3633 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3633 -1.0277 0.0005 24 1 1.8934 -0.5139 -0.8899 25 1 1.8934 -0.5138 0.8901 26 1 1.3880 2.1185 -0.0004 27 1 3.9230 -0.4479 0.0025 28 1 6.3576 0.0266 0.0020 29 1 7.7373 3.2561 -0.4804 30 1 10.7712 -0.4058 2.5062 31 1 5.4204 4.2079 0.0000 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001522317057.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:36:59 Heat of formation + Delta-G solvation = -24.473904 kcal Electronic energy + Delta-G solvation = -15760.844220 eV Core-core repulsion = 13041.070219 eV Total energy + Delta-G solvation = -2719.774002 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.31690 -39.50583 -37.17343 -35.29301 -34.42183 -32.89720 -31.80048 -29.47771 -27.79424 -24.97544 -24.06988 -22.80596 -21.69817 -19.57934 -18.52149 -17.79664 -17.55643 -17.19946 -16.08381 -15.85325 -15.53961 -15.29033 -14.90536 -14.66628 -14.44593 -13.81025 -13.57502 -13.16931 -12.95864 -12.78084 -12.66919 -12.55583 -12.53539 -12.05562 -11.55934 -10.92848 -10.68450 -10.55117 -9.97284 -9.65841 -8.36305 -8.12863 -6.97377 0.36882 0.60870 1.41437 1.43949 1.56473 2.22262 2.30850 2.40351 3.00685 3.09328 3.66835 3.80145 4.11117 4.18859 4.21237 4.27194 4.38722 4.56839 4.80519 4.92161 5.09536 5.15822 5.23587 5.28092 5.35202 5.53452 5.91458 6.15400 6.20811 6.36983 6.73899 6.76688 7.28489 7.45862 8.41975 8.60098 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.063148 B = 0.004908 C = 0.004613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 443.294959 B = 5703.607141 C = 6068.212368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.119 3.881 3 N -0.725 5.725 4 C 0.360 3.640 5 C -0.218 4.218 6 C -0.066 4.066 7 C 0.055 3.945 8 N -0.688 5.688 9 C 0.530 3.470 10 O -0.618 6.618 11 C -0.566 4.566 12 H 0.092 0.908 13 C 0.032 3.968 14 N -0.803 5.803 15 Si 1.001 2.999 16 H -0.254 1.254 17 H -0.274 1.274 18 H -0.253 1.253 19 C 0.102 3.898 20 N -0.536 5.536 21 H 0.063 0.937 22 H 0.067 0.933 23 H 0.089 0.911 24 H 0.062 0.938 25 H 0.055 0.945 26 H 0.406 0.594 27 H 0.143 0.857 28 H 0.115 0.885 29 H 0.406 0.594 30 H 0.278 0.722 31 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.979 2.391 -4.811 13.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.005 4.005 3 N -0.361 5.361 4 C 0.124 3.876 5 C -0.243 4.243 6 C -0.095 4.095 7 C -0.045 4.045 8 N -0.334 5.334 9 C 0.339 3.661 10 O -0.505 6.505 11 C -0.602 4.602 12 H 0.110 0.890 13 C -0.186 4.186 14 N -0.431 5.431 15 Si 0.820 3.180 16 H -0.178 1.178 17 H -0.198 1.198 18 H -0.177 1.177 19 C -0.058 4.058 20 N -0.254 5.254 21 H 0.082 0.918 22 H 0.086 0.914 23 H 0.108 0.892 24 H 0.080 0.920 25 H 0.073 0.927 26 H 0.242 0.758 27 H 0.161 0.839 28 H 0.133 0.867 29 H 0.242 0.758 30 H 0.088 0.912 31 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -12.803 1.969 -4.320 13.655 hybrid contribution 1.434 -0.141 0.017 1.441 sum -11.369 1.828 -4.304 12.293 Atomic orbital electron populations 1.21915 0.92093 1.04147 1.02932 1.21476 0.96289 0.81506 1.01253 1.44388 1.01105 1.08684 1.81938 1.18450 0.86644 0.88723 0.93802 1.21401 0.92008 0.99970 1.10909 1.21551 0.95773 0.96596 0.95542 1.18930 0.86345 0.94261 1.05010 1.43406 1.03662 1.31827 1.54528 1.17412 0.87092 0.83094 0.78461 1.90584 1.79767 1.27937 1.52252 1.20556 0.92728 1.10694 1.36173 0.89019 1.27021 1.06329 0.93228 0.92007 1.70166 1.38107 1.11133 1.23700 0.85010 0.74193 0.79029 0.79743 1.17777 1.19840 1.17656 1.22480 0.86077 0.99062 0.98157 1.67076 1.17049 1.20324 1.20918 0.91774 0.91431 0.89219 0.92006 0.92654 0.75771 0.83947 0.86723 0.75809 0.91168 0.80585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.92 10.03 71.98 0.72 -1.19 16 2 C 0.12 2.29 5.61 86.38 0.48 2.77 16 3 N -0.72 -18.37 5.73 -344.91 -1.98 -20.34 16 4 C 0.36 12.33 7.65 133.09 1.02 13.35 16 5 C -0.22 -8.12 9.32 22.49 0.21 -7.91 16 6 C -0.07 -3.00 8.79 22.58 0.20 -2.80 16 7 C 0.06 2.44 6.32 38.43 0.24 2.68 16 8 N -0.69 -31.89 5.32 -311.01 -1.65 -33.54 16 9 C 0.53 30.51 7.43 85.11 0.63 31.14 16 10 O -0.62 -40.47 12.34 -4.64 -0.06 -40.53 16 11 C -0.57 -31.24 9.31 23.60 0.22 -31.02 16 12 H 0.09 4.46 7.85 -2.91 -0.02 4.43 16 13 C 0.03 1.74 5.50 85.33 0.47 2.21 16 14 N -0.80 -47.76 11.73 21.85 0.26 -47.51 16 15 Si 1.00 39.43 29.56 68.60 2.03 41.46 16 16 H -0.25 -9.43 7.11 99.48 0.71 -8.72 16 17 H -0.27 -10.41 7.11 99.48 0.71 -9.71 16 18 H -0.25 -9.34 7.11 99.48 0.71 -8.63 16 19 C 0.10 3.77 11.12 84.86 0.94 4.71 16 20 N -0.54 -19.33 10.38 -192.46 -2.00 -21.33 16 21 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 22 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 23 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 24 H 0.06 1.18 7.92 -2.39 -0.02 1.16 16 25 H 0.06 1.13 7.92 -2.39 -0.02 1.12 16 26 H 0.41 9.05 8.60 -92.71 -0.80 8.26 16 27 H 0.14 4.56 6.69 -2.91 -0.02 4.54 16 28 H 0.11 6.03 6.31 -2.91 -0.02 6.01 16 29 H 0.41 15.69 8.78 -92.71 -0.81 14.87 16 30 H 0.28 14.95 8.29 -92.71 -0.77 14.18 16 31 H 0.18 5.35 8.06 -2.91 -0.02 5.32 16 Total: -1.00 -73.97 272.30 1.30 -72.67 By element: Atomic # 1 Polarization: 35.61 SS G_CDS: -0.44 Total: 35.18 kcal Atomic # 6 Polarization: 8.80 SS G_CDS: 5.14 Total: 13.94 kcal Atomic # 7 Polarization: -117.35 SS G_CDS: -5.37 Total: -122.72 kcal Atomic # 8 Polarization: -40.47 SS G_CDS: -0.06 Total: -40.53 kcal Atomic # 14 Polarization: 39.43 SS G_CDS: 2.03 Total: 41.46 kcal Total: -73.97 1.30 -72.67 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001522317057.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.194 kcal (2) G-P(sol) polarization free energy of solvation -73.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds