Wall clock time and date at job start Mon Mar 30 2020 17:36:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.47134 * 2 1 4 4 H 1.08994 * 109.47416 * 306.18517 * 3 2 1 5 5 C 1.50694 * 109.47027 * 186.18267 * 3 2 1 6 6 H 1.08000 * 120.00161 * 243.67263 * 5 3 2 7 7 C 1.37881 * 120.00124 * 63.67194 * 5 3 2 8 8 N 1.31515 * 119.99698 * 198.22650 * 7 5 3 9 9 Si 1.86792 * 119.99727 * 18.23237 * 7 5 3 10 10 H 1.48497 * 109.47524 * 86.70939 * 9 7 5 11 11 H 1.48509 * 109.47166 * 206.70988 * 9 7 5 12 12 H 1.48507 * 109.47245 * 326.70603 * 9 7 5 13 13 N 1.46908 * 109.46718 * 66.18361 * 3 2 1 14 14 C 1.46895 * 110.99557 * 252.08557 * 13 3 2 15 15 C 1.50698 * 109.46891 * 185.49683 * 14 13 3 16 16 N 1.32159 * 120.00168 * 95.19782 * 15 14 13 17 17 C 1.32123 * 120.00152 * 179.97438 * 16 15 14 18 18 C 1.38393 * 119.99934 * 359.97438 * 17 16 15 19 19 N 1.32119 * 119.99525 * 0.02562 * 18 17 16 20 20 C 1.32159 * 120.00402 * 359.73069 * 19 18 17 21 21 C 1.50694 * 120.00177 * 180.27768 * 20 19 18 22 22 H 1.08996 * 109.47150 * 175.06972 * 1 2 3 23 23 H 1.09003 * 109.46945 * 55.07323 * 1 2 3 24 24 H 1.08998 * 109.46961 * 295.07404 * 1 2 3 25 25 H 1.09003 * 109.47002 * 120.00202 * 2 1 3 26 26 H 1.09005 * 109.47062 * 239.99748 * 2 1 3 27 27 H 0.97003 * 119.99485 * 179.97438 * 8 7 5 28 28 H 1.00897 * 111.00294 * 16.04263 * 13 3 2 29 29 H 1.09001 * 109.47739 * 305.49272 * 14 13 3 30 30 H 1.08993 * 109.47452 * 65.49818 * 14 13 3 31 31 H 1.07998 * 120.00040 * 180.02562 * 17 16 15 32 32 H 1.07999 * 120.00364 * 179.97438 * 18 17 16 33 33 H 1.08994 * 109.47466 * 269.16711 * 21 20 19 34 34 H 1.09001 * 109.47632 * 29.16927 * 21 20 19 35 35 H 1.09000 * 109.47162 * 149.16897 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5892 1.9873 -0.8294 5 6 3.5392 1.4452 -0.1530 6 1 4.1623 1.8306 0.6404 7 6 4.1154 0.9557 -1.3060 8 7 5.3874 0.6215 -1.3147 9 14 3.0894 0.7673 -2.8555 10 1 3.0925 2.0463 -3.6099 11 1 3.6649 -0.3083 -3.7026 12 1 1.6952 0.4137 -2.4862 13 7 1.6759 2.0905 1.2671 14 6 0.6060 3.0767 1.0656 15 6 0.3533 3.8143 2.3552 16 7 0.9443 4.9749 2.5794 17 6 0.7223 5.6218 3.7098 18 6 -0.1295 5.0843 4.6589 19 7 -0.7202 3.9240 4.4347 20 6 -0.5019 3.2792 3.3019 21 6 -1.1806 1.9588 3.0435 22 1 -0.3633 -1.0238 -0.0883 23 1 -0.3633 0.5884 -0.8426 24 1 -0.3633 0.4355 0.9308 25 1 1.8934 -0.5139 0.8900 26 1 1.8934 -0.5139 -0.8900 27 1 5.7926 0.2767 -2.1258 28 1 1.4114 1.4066 1.9602 29 1 0.9061 3.7860 0.2942 30 1 -0.3052 2.5658 0.7547 31 1 1.2049 6.5705 3.8928 32 1 -0.3107 5.6128 5.5831 33 1 -0.5457 1.1479 3.4003 34 1 -2.1348 1.9315 3.5698 35 1 -1.3524 1.8418 1.9735 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598674820.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:36:35 Heat of formation + Delta-G solvation = 46.387960 kcal Electronic energy + Delta-G solvation = -16650.928631 eV Core-core repulsion = 14070.060524 eV Total energy + Delta-G solvation = -2580.868106 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.05913 -36.99838 -34.42382 -33.76453 -32.03605 -30.89039 -28.15663 -27.71048 -25.41703 -23.04308 -22.53451 -21.82675 -19.99688 -17.72856 -16.86938 -16.26023 -15.49606 -15.43631 -14.72280 -14.48493 -13.96455 -13.52148 -13.03099 -12.88232 -12.70381 -12.63260 -12.15429 -11.95541 -11.70666 -11.58868 -11.33913 -10.98762 -10.85223 -10.65389 -10.44431 -9.97423 -9.58813 -9.36047 -8.96750 -8.89108 -8.35564 -7.41195 -6.05503 -3.95413 0.85831 1.26267 3.28601 3.36978 3.39864 3.74591 4.09410 4.26810 4.44412 4.55843 4.78476 5.13383 5.17822 5.21553 5.31708 5.45487 5.46740 5.57612 5.72178 5.80179 5.85585 5.91184 5.97831 6.13855 6.43548 6.49048 6.54062 6.69269 6.81812 7.14672 7.41843 7.75113 7.87598 7.93978 8.23259 8.71959 9.14690 9.61658 11.08025 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.034242 B = 0.006774 C = 0.006099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.515362 B = 4132.648233 C = 4589.885226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.149 4.149 3 C 0.196 3.804 4 H 0.022 0.978 5 C -0.501 4.501 6 H 0.080 0.920 7 C 0.073 3.927 8 N -0.891 5.891 9 Si 0.857 3.143 10 H -0.280 1.280 11 H -0.289 1.289 12 H -0.256 1.256 13 N -0.661 5.661 14 C 0.105 3.895 15 C 0.104 3.896 16 N -0.419 5.419 17 C 0.043 3.957 18 C 0.039 3.961 19 N -0.443 5.443 20 C 0.079 3.921 21 C -0.107 4.107 22 H 0.044 0.956 23 H 0.046 0.954 24 H 0.046 0.954 25 H 0.059 0.941 26 H 0.064 0.936 27 H 0.262 0.738 28 H 0.326 0.674 29 H 0.090 0.910 30 H 0.045 0.955 31 H 0.166 0.834 32 H 0.165 0.835 33 H 0.084 0.916 34 H 0.077 0.923 35 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.921 4.593 7.723 16.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.188 4.188 3 C 0.088 3.912 4 H 0.040 0.960 5 C -0.539 4.539 6 H 0.098 0.902 7 C -0.129 4.129 8 N -0.529 5.529 9 Si 0.684 3.316 10 H -0.206 1.206 11 H -0.215 1.215 12 H -0.181 1.181 13 N -0.292 5.292 14 C -0.026 4.026 15 C -0.037 4.037 16 N -0.133 5.133 17 C -0.117 4.117 18 C -0.121 4.121 19 N -0.158 5.158 20 C -0.062 4.062 21 C -0.165 4.165 22 H 0.063 0.937 23 H 0.065 0.935 24 H 0.065 0.935 25 H 0.078 0.922 26 H 0.082 0.918 27 H 0.072 0.928 28 H 0.143 0.857 29 H 0.108 0.892 30 H 0.062 0.938 31 H 0.183 0.817 32 H 0.182 0.818 33 H 0.103 0.897 34 H 0.096 0.904 35 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -13.245 4.985 7.552 16.041 hybrid contribution -1.052 -0.544 -0.944 1.515 sum -14.298 4.442 6.607 16.365 Atomic orbital electron populations 1.22017 0.98555 1.00556 1.00519 1.22575 0.92668 1.01288 1.02306 1.19586 0.97000 0.88354 0.86277 0.96004 1.20960 0.89117 1.40400 1.03401 0.90175 1.24894 0.94759 0.94643 0.98612 1.70000 1.12485 1.42432 1.27987 0.87319 0.81878 0.77937 0.84460 1.20576 1.21538 1.18085 1.60588 1.37730 1.18870 1.12020 1.20943 0.94547 0.95379 0.91711 1.22221 0.92101 0.91898 0.97512 1.68349 1.18302 1.06801 1.19878 1.23775 0.96682 1.00673 0.90541 1.23661 0.95092 0.92894 1.00491 1.68231 1.21213 1.07118 1.19243 1.22081 0.96093 0.97653 0.90395 1.20837 1.00763 0.91791 1.03078 0.93685 0.93507 0.93548 0.92197 0.91755 0.92788 0.85659 0.89196 0.93761 0.81652 0.81752 0.89702 0.90367 0.89912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.52 9.07 37.16 0.34 -2.18 16 2 C -0.15 -3.01 4.53 -26.73 -0.12 -3.13 16 3 C 0.20 4.43 1.73 -68.86 -0.12 4.31 16 4 H 0.02 0.51 6.21 -51.93 -0.32 0.19 16 5 C -0.50 -14.01 9.26 -34.44 -0.32 -14.33 16 6 H 0.08 2.53 8.06 -52.49 -0.42 2.10 16 7 C 0.07 2.07 5.28 -17.82 -0.09 1.98 16 8 N -0.89 -27.14 13.96 55.43 0.77 -26.36 16 9 Si 0.86 20.78 25.84 -169.99 -4.39 16.39 16 10 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 11 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 12 H -0.26 -5.73 5.63 56.52 0.32 -5.41 16 13 N -0.66 -13.19 6.04 -109.23 -0.66 -13.85 16 14 C 0.10 1.79 4.98 -4.98 -0.02 1.76 16 15 C 0.10 1.69 6.34 -82.41 -0.52 1.17 16 16 N -0.42 -6.97 10.42 -9.29 -0.10 -7.07 16 17 C 0.04 0.55 11.23 -17.37 -0.19 0.36 16 18 C 0.04 0.46 11.23 -17.37 -0.20 0.27 16 19 N -0.44 -6.24 10.42 -9.29 -0.10 -6.33 16 20 C 0.08 1.14 6.79 -82.41 -0.56 0.58 16 21 C -0.11 -1.23 9.35 36.00 0.34 -0.90 16 22 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 23 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 24 H 0.05 0.63 5.21 -51.93 -0.27 0.36 16 25 H 0.06 1.20 8.04 -51.93 -0.42 0.78 16 26 H 0.06 1.41 5.04 -51.93 -0.26 1.14 16 27 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 28 H 0.33 5.95 7.60 -39.29 -0.30 5.66 16 29 H 0.09 1.66 8.00 -51.93 -0.42 1.25 16 30 H 0.04 0.66 4.92 -51.93 -0.26 0.40 16 31 H 0.17 1.53 8.06 -52.49 -0.42 1.11 16 32 H 0.17 1.31 8.06 -52.49 -0.42 0.88 16 33 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.08 0.90 4.79 -51.93 -0.25 0.65 16 LS Contribution 281.17 15.07 4.24 4.24 Total: -1.00 -32.11 281.17 -6.38 -38.49 By element: Atomic # 1 Polarization: 9.28 SS G_CDS: -4.67 Total: 4.61 kcal Atomic # 6 Polarization: -8.64 SS G_CDS: -1.48 Total: -10.11 kcal Atomic # 7 Polarization: -53.54 SS G_CDS: -0.08 Total: -53.62 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -4.39 Total: 16.39 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -32.11 -6.38 -38.49 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598674820.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.876 kcal (2) G-P(sol) polarization free energy of solvation -32.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.488 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds