Wall clock time and date at job start Mon Mar 30 2020 17:36:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09002 * 109.47515 * 2 1 4 4 C 1.53003 * 109.46689 * 240.00366 * 2 1 3 5 5 C 1.50697 * 109.47006 * 176.31766 * 4 2 1 6 6 H 1.07997 * 120.00260 * 5.00923 * 5 4 2 7 7 C 1.37883 * 119.99784 * 185.00747 * 5 4 2 8 8 N 1.31516 * 119.99916 * 179.97438 * 7 5 4 9 9 Si 1.86802 * 120.00026 * 0.02562 * 7 5 4 10 10 H 1.48500 * 109.47016 * 89.99643 * 9 7 5 11 11 H 1.48497 * 109.46819 * 209.99705 * 9 7 5 12 12 H 1.48498 * 109.47068 * 329.99951 * 9 7 5 13 13 N 1.46901 * 109.47413 * 120.00452 * 2 1 3 14 14 C 1.46949 * 111.00086 * 53.48046 * 13 2 1 15 15 C 1.53501 * 109.68141 * 164.47015 * 14 13 2 16 16 C 1.50924 * 107.86573 * 49.22607 * 15 14 13 17 17 N 1.33297 * 128.92130 * 164.05092 * 16 15 14 18 18 C 1.30838 * 109.09826 * 180.09578 * 17 16 15 19 19 N 1.35388 * 108.78958 * 359.97438 * 18 17 16 20 20 H 0.96996 * 126.50217 * 179.97438 * 19 18 17 21 21 C 1.35258 * 123.02436 * 344.05069 * 16 15 14 22 22 C 1.47323 * 110.99925 * 288.99372 * 13 2 1 23 23 H 1.08994 * 109.47698 * 59.99134 * 1 2 3 24 24 H 1.08993 * 109.47621 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.46930 * 299.99718 * 1 2 3 26 26 H 1.09000 * 109.47194 * 296.31361 * 4 2 1 27 27 H 1.08997 * 109.47410 * 56.31320 * 4 2 1 28 28 H 0.96997 * 119.99885 * 179.97438 * 8 7 5 29 29 H 1.09009 * 109.43648 * 284.53510 * 14 13 2 30 30 H 1.09006 * 109.43923 * 44.44729 * 14 13 2 31 31 H 1.08997 * 109.78766 * 168.81622 * 15 14 13 32 32 H 1.09005 * 109.77994 * 289.63909 * 15 14 13 33 33 H 1.07998 * 125.60863 * 179.97438 * 18 17 16 34 34 H 1.08998 * 109.70372 * 295.02223 * 22 13 2 35 35 H 1.09006 * 109.69979 * 55.63462 * 22 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 3.5441 -0.6427 -1.2959 6 1 4.0875 -0.2013 -0.4736 7 6 4.2266 -1.1345 -2.3884 8 7 5.5393 -1.0655 -2.4292 9 14 3.2866 -1.8973 -3.8110 10 1 2.9535 -0.8454 -4.8049 11 1 4.1248 -2.9398 -4.4557 12 1 2.0342 -2.5130 -3.3034 13 7 2.0197 -0.6926 1.1994 14 6 1.4256 -2.0317 1.3137 15 6 2.2232 -2.8665 2.3252 16 6 2.3960 -2.0383 3.5750 17 7 2.7564 -2.4312 4.7968 18 6 2.7822 -1.3914 5.5905 19 7 2.4335 -0.2923 4.8810 20 1 2.3691 0.6152 5.2174 21 6 2.1913 -0.7017 3.6078 22 6 1.7737 0.1101 2.4100 23 1 -0.3634 0.5139 -0.8898 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8901 26 1 1.7314 -1.7662 -1.2170 27 1 1.6236 -0.2469 -2.1381 28 1 6.0194 -1.4118 -3.1976 29 1 0.3928 -1.9428 1.6510 30 1 1.4483 -2.5230 0.3409 31 1 1.6780 -3.7804 2.5609 32 1 3.1997 -3.1154 1.9097 33 1 3.0395 -1.4072 6.6393 34 1 2.3584 1.0290 2.3668 35 1 0.7131 0.3517 2.4814 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599422332.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:36:42 Heat of formation + Delta-G solvation = 64.186595 kcal Electronic energy + Delta-G solvation = -16958.991675 eV Core-core repulsion = 14378.895376 eV Total energy + Delta-G solvation = -2580.096299 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.02650 -38.24440 -33.73932 -32.91702 -31.91840 -29.82126 -28.70312 -27.71606 -24.27747 -23.26129 -22.29894 -21.37619 -19.57316 -18.10942 -17.60770 -16.54383 -15.51256 -15.39018 -14.60002 -14.05635 -13.98347 -13.90430 -13.34343 -12.92693 -12.49743 -12.42752 -12.03968 -11.90240 -11.56735 -11.44364 -11.08839 -10.73809 -10.52880 -10.22998 -9.75003 -9.70367 -9.60989 -9.54742 -9.02356 -8.40793 -7.91701 -7.55963 -5.89091 -3.83588 2.20717 3.18484 3.35411 3.36518 3.45082 3.46764 4.40987 4.55565 4.67870 5.01629 5.31515 5.43626 5.46560 5.53304 5.60275 5.67218 5.72396 5.78371 5.90193 5.93547 6.22961 6.25821 6.36066 6.46417 6.48247 6.63473 6.72841 6.98475 7.10455 7.32524 7.52769 7.70940 7.76260 7.94863 8.29209 8.73798 9.25168 9.73644 11.24906 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.032572 B = 0.007125 C = 0.006627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.433438 B = 3929.017979 C = 4224.073458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.097 3.903 3 H 0.077 0.923 4 C -0.006 4.006 5 C -0.493 4.493 6 H 0.080 0.920 7 C 0.062 3.938 8 N -0.907 5.907 9 Si 0.872 3.128 10 H -0.280 1.280 11 H -0.290 1.290 12 H -0.268 1.268 13 N -0.503 5.503 14 C 0.058 3.942 15 C -0.030 4.030 16 C 0.019 3.981 17 N -0.487 5.487 18 C 0.164 3.836 19 N -0.560 5.560 20 H 0.417 0.583 21 C -0.025 4.025 22 C 0.132 3.868 23 H 0.058 0.942 24 H 0.054 0.946 25 H 0.043 0.957 26 H 0.017 0.983 27 H 0.016 0.984 28 H 0.259 0.741 29 H 0.027 0.973 30 H 0.092 0.908 31 H 0.073 0.927 32 H 0.088 0.912 33 H 0.205 0.795 34 H 0.082 0.918 35 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.226 2.326 12.248 16.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C -0.010 4.010 3 H 0.095 0.905 4 C -0.043 4.043 5 C -0.531 4.531 6 H 0.098 0.902 7 C -0.138 4.138 8 N -0.547 5.547 9 Si 0.701 3.299 10 H -0.206 1.206 11 H -0.216 1.216 12 H -0.193 1.193 13 N -0.227 5.227 14 C -0.070 4.070 15 C -0.069 4.069 16 C -0.111 4.111 17 N -0.206 5.206 18 C -0.118 4.118 19 N -0.163 5.163 20 H 0.254 0.746 21 C -0.141 4.141 22 C 0.003 3.997 23 H 0.077 0.923 24 H 0.073 0.927 25 H 0.062 0.938 26 H 0.035 0.965 27 H 0.034 0.966 28 H 0.069 0.931 29 H 0.045 0.955 30 H 0.111 0.889 31 H 0.091 0.909 32 H 0.106 0.894 33 H 0.221 0.779 34 H 0.100 0.900 35 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -9.372 1.363 12.297 15.521 hybrid contribution -1.327 1.019 -0.590 1.774 sum -10.699 2.383 11.707 16.038 Atomic orbital electron populations 1.22583 0.99495 1.01626 1.01013 1.21712 0.89950 0.98571 0.90806 0.90472 1.19687 0.98097 0.95246 0.91257 1.21060 0.89177 1.38363 1.04478 0.90161 1.25024 0.94663 0.95989 0.98106 1.69914 1.06507 1.47776 1.30505 0.86906 0.80306 0.79431 0.83304 1.20640 1.21616 1.19308 1.62005 1.58745 1.01708 1.00217 1.22168 0.94411 0.90333 1.00092 1.20074 1.01925 0.95869 0.89037 1.20576 1.05116 0.91708 0.93691 1.69862 1.19107 1.29586 1.02040 1.24962 1.06374 0.81193 0.99258 1.42748 1.53188 1.11254 1.09082 0.74635 1.20980 1.10246 0.96475 0.86437 1.20426 0.97964 0.95207 0.86095 0.92300 0.92661 0.93837 0.96463 0.96570 0.93065 0.95504 0.88940 0.90890 0.89355 0.77858 0.90022 0.93988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.86 8.50 37.16 0.32 -2.55 16 2 C 0.10 1.83 2.27 -67.71 -0.15 1.68 16 3 H 0.08 1.48 8.07 -51.93 -0.42 1.06 16 4 C -0.01 -0.13 3.45 -27.88 -0.10 -0.22 16 5 C -0.49 -13.77 9.37 -34.44 -0.32 -14.09 16 6 H 0.08 2.48 7.95 -52.49 -0.42 2.06 16 7 C 0.06 1.80 5.47 -17.82 -0.10 1.70 16 8 N -0.91 -28.28 13.96 55.43 0.77 -27.50 16 9 Si 0.87 21.67 27.37 -169.99 -4.65 17.02 16 10 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 11 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 12 H -0.27 -6.36 6.69 56.52 0.38 -5.98 16 13 N -0.50 -9.32 4.22 -227.40 -0.96 -10.28 16 14 C 0.06 1.01 4.25 -3.54 -0.02 0.99 16 15 C -0.03 -0.53 6.52 -27.51 -0.18 -0.71 16 16 C 0.02 0.34 7.07 -82.91 -0.59 -0.25 16 17 N -0.49 -8.28 11.24 -10.69 -0.12 -8.40 16 18 C 0.16 2.09 13.05 -89.78 -1.17 0.92 16 19 N -0.56 -6.71 6.14 -10.25 -0.06 -6.77 16 20 H 0.42 3.31 8.96 -40.82 -0.37 2.95 16 21 C -0.02 -0.39 7.18 -81.89 -0.59 -0.98 16 22 C 0.13 2.04 5.67 -4.79 -0.03 2.01 16 23 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 24 H 0.05 0.83 6.67 -51.93 -0.35 0.48 16 25 H 0.04 0.58 6.65 -51.93 -0.35 0.24 16 26 H 0.02 0.40 5.57 -51.93 -0.29 0.11 16 27 H 0.02 0.37 7.29 -51.93 -0.38 -0.01 16 28 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 29 H 0.03 0.42 7.13 -51.92 -0.37 0.05 16 30 H 0.09 1.70 5.92 -51.93 -0.31 1.39 16 31 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 32 H 0.09 1.69 8.14 -51.93 -0.42 1.27 16 33 H 0.20 1.63 8.06 -52.49 -0.42 1.20 16 34 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 35 H 0.04 0.58 6.53 -51.93 -0.34 0.24 16 LS Contribution 276.31 15.07 4.16 4.16 Total: -1.00 -33.66 276.31 -8.63 -42.28 By element: Atomic # 1 Polarization: 5.83 SS G_CDS: -4.85 Total: 0.98 kcal Atomic # 6 Polarization: -8.57 SS G_CDS: -2.92 Total: -11.49 kcal Atomic # 7 Polarization: -52.59 SS G_CDS: -0.37 Total: -52.96 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -4.65 Total: 17.02 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -33.66 -8.63 -42.28 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599422332.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.471 kcal (2) G-P(sol) polarization free energy of solvation -33.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.285 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds