Wall clock time and date at job start Mon Mar 30 2020 17:36:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09002 * 109.47515 * 2 1 4 4 C 1.53003 * 109.46689 * 240.00366 * 2 1 3 5 5 C 1.50697 * 109.47006 * 176.31766 * 4 2 1 6 6 H 1.07997 * 120.00260 * 5.00923 * 5 4 2 7 7 C 1.37883 * 119.99784 * 185.00747 * 5 4 2 8 8 N 1.31516 * 119.99916 * 179.97438 * 7 5 4 9 9 Si 1.86802 * 120.00026 * 0.02562 * 7 5 4 10 10 H 1.48500 * 109.47016 * 89.99643 * 9 7 5 11 11 H 1.48497 * 109.46819 * 209.99705 * 9 7 5 12 12 H 1.48498 * 109.47068 * 329.99951 * 9 7 5 13 13 N 1.46901 * 109.47413 * 120.00452 * 2 1 3 14 14 C 1.46949 * 111.00086 * 53.48046 * 13 2 1 15 15 C 1.53501 * 109.68141 * 164.47015 * 14 13 2 16 16 C 1.50924 * 107.86573 * 49.22607 * 15 14 13 17 17 N 1.33297 * 128.92130 * 164.05092 * 16 15 14 18 18 C 1.30838 * 109.09826 * 180.09578 * 17 16 15 19 19 N 1.35388 * 108.78958 * 359.97438 * 18 17 16 20 20 H 0.96996 * 126.50217 * 179.97438 * 19 18 17 21 21 C 1.35258 * 123.02436 * 344.05069 * 16 15 14 22 22 C 1.47323 * 110.99925 * 288.99372 * 13 2 1 23 23 H 1.08994 * 109.47698 * 59.99134 * 1 2 3 24 24 H 1.08993 * 109.47621 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.46930 * 299.99718 * 1 2 3 26 26 H 1.09000 * 109.47194 * 296.31361 * 4 2 1 27 27 H 1.08997 * 109.47410 * 56.31320 * 4 2 1 28 28 H 0.96997 * 119.99885 * 179.97438 * 8 7 5 29 29 H 1.09009 * 109.43648 * 284.53510 * 14 13 2 30 30 H 1.09006 * 109.43923 * 44.44729 * 14 13 2 31 31 H 1.08997 * 109.78766 * 168.81622 * 15 14 13 32 32 H 1.09005 * 109.77994 * 289.63909 * 15 14 13 33 33 H 1.07998 * 125.60863 * 179.97438 * 18 17 16 34 34 H 1.08998 * 109.70372 * 295.02223 * 22 13 2 35 35 H 1.09006 * 109.69979 * 55.63462 * 22 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 3.5441 -0.6427 -1.2959 6 1 4.0875 -0.2013 -0.4736 7 6 4.2266 -1.1345 -2.3884 8 7 5.5393 -1.0655 -2.4292 9 14 3.2866 -1.8973 -3.8110 10 1 2.9535 -0.8454 -4.8049 11 1 4.1248 -2.9398 -4.4557 12 1 2.0342 -2.5130 -3.3034 13 7 2.0197 -0.6926 1.1994 14 6 1.4256 -2.0317 1.3137 15 6 2.2232 -2.8665 2.3252 16 6 2.3960 -2.0383 3.5750 17 7 2.7564 -2.4312 4.7968 18 6 2.7822 -1.3914 5.5905 19 7 2.4335 -0.2923 4.8810 20 1 2.3691 0.6152 5.2174 21 6 2.1913 -0.7017 3.6078 22 6 1.7737 0.1101 2.4100 23 1 -0.3634 0.5139 -0.8898 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8901 26 1 1.7314 -1.7662 -1.2170 27 1 1.6236 -0.2469 -2.1381 28 1 6.0194 -1.4118 -3.1976 29 1 0.3928 -1.9428 1.6510 30 1 1.4483 -2.5230 0.3409 31 1 1.6780 -3.7804 2.5609 32 1 3.1997 -3.1154 1.9097 33 1 3.0395 -1.4072 6.6393 34 1 2.3584 1.0290 2.3668 35 1 0.7131 0.3517 2.4814 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599422332.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:36:42 Heat of formation + Delta-G solvation = 40.516589 kcal Electronic energy + Delta-G solvation = -16960.018084 eV Core-core repulsion = 14378.895376 eV Total energy + Delta-G solvation = -2581.122708 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -43.14401 -39.62301 -35.36933 -34.33940 -33.61455 -31.19341 -30.14123 -29.24673 -25.62479 -24.61485 -24.06958 -22.48019 -20.99677 -19.40277 -18.74050 -18.70868 -16.86913 -16.65003 -16.28703 -15.61584 -15.27275 -15.03598 -14.78791 -14.40994 -14.18511 -13.87631 -13.54545 -13.27726 -13.16788 -12.77378 -12.53992 -12.46723 -12.02334 -11.83589 -11.56284 -11.34594 -11.07708 -10.88257 -10.79607 -10.62977 -9.13157 -8.85713 -8.13641 -6.12463 1.10542 1.39708 1.42459 1.53003 2.17719 2.19731 2.45507 3.08144 3.25149 3.61637 3.90797 4.11095 4.24211 4.30388 4.34938 4.42487 4.53579 4.55309 4.61154 4.68844 4.88271 4.99409 5.08184 5.13424 5.16244 5.20992 5.26639 5.35004 5.62099 5.77211 5.80068 6.35104 6.36509 6.56941 6.64538 6.97405 7.18019 7.48335 9.04043 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.032572 B = 0.007125 C = 0.006627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.433438 B = 3929.017979 C = 4224.073458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.101 3.899 3 H 0.068 0.932 4 C -0.005 4.005 5 C -0.488 4.488 6 H 0.035 0.965 7 C -0.006 4.006 8 N -0.961 5.961 9 Si 0.944 3.056 10 H -0.268 1.268 11 H -0.293 1.293 12 H -0.246 1.246 13 N -0.536 5.536 14 C 0.067 3.933 15 C -0.029 4.029 16 C -0.016 4.016 17 N -0.532 5.532 18 C 0.185 3.815 19 N -0.544 5.544 20 H 0.437 0.563 21 C -0.033 4.033 22 C 0.138 3.862 23 H 0.068 0.932 24 H 0.058 0.942 25 H 0.066 0.934 26 H 0.020 0.980 27 H 0.025 0.975 28 H 0.259 0.741 29 H 0.049 0.951 30 H 0.075 0.925 31 H 0.085 0.915 32 H 0.054 0.946 33 H 0.252 0.748 34 H 0.083 0.917 35 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.771 2.914 13.197 18.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.007 4.007 3 H 0.086 0.914 4 C -0.042 4.042 5 C -0.527 4.527 6 H 0.053 0.947 7 C -0.200 4.200 8 N -0.604 5.604 9 Si 0.769 3.231 10 H -0.194 1.194 11 H -0.220 1.220 12 H -0.170 1.170 13 N -0.261 5.261 14 C -0.061 4.061 15 C -0.068 4.068 16 C -0.146 4.146 17 N -0.252 5.252 18 C -0.098 4.098 19 N -0.149 5.149 20 H 0.278 0.722 21 C -0.151 4.151 22 C 0.009 3.991 23 H 0.087 0.913 24 H 0.077 0.923 25 H 0.085 0.915 26 H 0.038 0.962 27 H 0.043 0.957 28 H 0.068 0.932 29 H 0.067 0.933 30 H 0.094 0.906 31 H 0.104 0.896 32 H 0.072 0.928 33 H 0.268 0.732 34 H 0.102 0.898 35 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -11.950 1.987 13.265 17.964 hybrid contribution -0.440 0.882 -0.724 1.223 sum -12.390 2.869 12.541 17.861 Atomic orbital electron populations 1.22436 0.96023 1.02399 1.02691 1.21501 0.92598 0.97266 0.89290 0.91350 1.19654 0.94455 0.96111 0.94006 1.21323 0.91984 1.36709 1.02672 0.94709 1.25981 0.95498 0.96960 1.01569 1.70097 1.08681 1.49902 1.31714 0.85754 0.79394 0.78585 0.79417 1.19375 1.21984 1.16954 1.61846 1.60186 1.02638 1.01412 1.22051 0.95346 0.89650 0.99085 1.19980 1.00331 0.96830 0.89636 1.20659 1.07105 0.92757 0.94050 1.69818 1.21122 1.31847 1.02422 1.25882 1.03235 0.80196 1.00512 1.42685 1.52095 1.12385 1.07693 0.72155 1.20973 1.10465 0.95899 0.87781 1.20401 0.99403 0.94554 0.84713 0.91291 0.92291 0.91527 0.96187 0.95686 0.93194 0.93341 0.90623 0.89639 0.92788 0.73191 0.89850 0.91554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.80 8.50 71.98 0.61 -4.19 16 2 C 0.10 3.69 2.27 44.91 0.10 3.79 16 3 H 0.07 2.57 8.07 -2.39 -0.02 2.55 16 4 C 0.00 -0.22 3.45 29.85 0.10 -0.11 16 5 C -0.49 -28.05 9.37 25.60 0.24 -27.81 16 6 H 0.03 2.26 7.95 -2.91 -0.02 2.23 16 7 C -0.01 -0.34 5.47 84.66 0.46 0.13 16 8 N -0.96 -62.18 13.96 21.45 0.30 -61.88 16 9 Si 0.94 44.91 27.37 68.60 1.88 46.79 16 10 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 11 H -0.29 -14.03 7.11 99.48 0.71 -13.33 16 12 H -0.25 -10.72 6.69 99.48 0.67 -10.06 16 13 N -0.54 -19.65 4.22 -873.36 -3.68 -23.33 16 14 C 0.07 2.27 4.25 86.46 0.37 2.64 16 15 C -0.03 -1.03 6.52 30.09 0.20 -0.83 16 16 C -0.02 -0.57 7.07 41.72 0.30 -0.27 16 17 N -0.53 -17.56 11.24 -187.74 -2.11 -19.67 16 18 C 0.18 4.18 13.05 180.05 2.35 6.53 16 19 N -0.54 -11.55 6.14 -186.36 -1.14 -12.70 16 20 H 0.44 5.46 8.96 -92.71 -0.83 4.63 16 21 C -0.03 -1.00 7.18 41.21 0.30 -0.70 16 22 C 0.14 4.02 5.67 85.45 0.48 4.50 16 23 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 24 H 0.06 1.57 6.67 -2.39 -0.02 1.55 16 25 H 0.07 1.51 6.65 -2.38 -0.02 1.50 16 26 H 0.02 0.90 5.57 -2.39 -0.01 0.89 16 27 H 0.02 1.09 7.29 -2.39 -0.02 1.07 16 28 H 0.26 15.80 8.31 -92.71 -0.77 15.03 16 29 H 0.05 1.42 7.13 -2.38 -0.02 1.41 16 30 H 0.08 2.77 5.92 -2.38 -0.01 2.76 16 31 H 0.09 2.69 8.14 -2.39 -0.02 2.67 16 32 H 0.05 2.22 8.14 -2.38 -0.02 2.20 16 33 H 0.25 2.89 8.06 -2.91 -0.02 2.86 16 34 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 35 H 0.07 1.61 6.53 -2.38 -0.02 1.60 16 Total: -1.00 -75.97 276.31 0.97 -75.00 By element: Atomic # 1 Polarization: 11.89 SS G_CDS: 0.22 Total: 12.12 kcal Atomic # 6 Polarization: -21.84 SS G_CDS: 5.51 Total: -16.33 kcal Atomic # 7 Polarization: -110.94 SS G_CDS: -6.64 Total: -117.57 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 1.88 Total: 46.79 kcal Total: -75.97 0.97 -75.00 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599422332.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.516 kcal (2) G-P(sol) polarization free energy of solvation -75.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.999 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds