Wall clock time and date at job start Mon Mar 30 2020 17:38:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47140 * 2 1 4 4 H 1.08995 * 109.47550 * 55.05906 * 3 2 1 5 5 C 1.50697 * 109.47231 * 175.06730 * 3 2 1 6 6 H 1.07991 * 120.00533 * 119.99909 * 5 3 2 7 7 C 1.37880 * 119.99501 * 299.99345 * 5 3 2 8 8 N 1.31511 * 120.00407 * 0.02562 * 7 5 3 9 9 Si 1.86804 * 120.00004 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.46793 * 90.00149 * 9 7 5 11 11 H 1.48502 * 109.47375 * 210.00393 * 9 7 5 12 12 H 1.48498 * 109.47004 * 330.00578 * 9 7 5 13 13 N 1.46905 * 109.47009 * 295.06167 * 3 2 1 14 14 C 1.46902 * 111.00138 * 167.14904 * 13 3 2 15 15 C 1.46900 * 111.00150 * 291.10401 * 13 3 2 16 16 C 1.50700 * 109.47109 * 164.04944 * 15 13 3 17 17 N 1.31795 * 119.11920 * 269.72594 * 16 15 13 18 18 C 1.32338 * 120.81778 * 179.76394 * 17 16 15 19 19 C 1.38595 * 119.09977 * 0.50201 * 18 17 16 20 20 C 1.38595 * 118.40358 * 359.75574 * 19 18 17 21 21 N 1.31790 * 119.12199 * 90.00376 * 16 15 13 22 22 H 1.08997 * 109.47150 * 55.21045 * 1 2 3 23 23 H 1.08999 * 109.47014 * 175.21760 * 1 2 3 24 24 H 1.08998 * 109.46627 * 295.21420 * 1 2 3 25 25 H 1.08997 * 109.46882 * 239.99452 * 2 1 3 26 26 H 1.09005 * 109.47139 * 119.99855 * 2 1 3 27 27 H 0.96997 * 120.00378 * 179.97438 * 8 7 5 28 28 H 1.08991 * 109.47286 * 183.95474 * 14 13 3 29 29 H 1.09000 * 109.46722 * 303.95817 * 14 13 3 30 30 H 1.08999 * 109.46759 * 63.95029 * 14 13 3 31 31 H 1.09001 * 109.47382 * 284.05175 * 15 13 3 32 32 H 1.08999 * 109.46904 * 44.04613 * 15 13 3 33 33 H 1.07996 * 120.44889 * 180.23633 * 18 17 16 34 34 H 1.08003 * 120.79744 * 179.77653 * 19 18 17 35 35 H 1.08000 * 120.45391 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6063 1.9813 0.8424 5 6 3.5420 1.4442 0.1222 6 1 4.1465 1.8891 -0.6544 7 6 4.1445 0.8780 1.2255 8 7 3.4085 0.3359 2.1711 9 14 6.0064 0.8795 1.3768 10 1 6.4449 2.1122 2.0792 11 1 6.4413 -0.3119 2.1494 12 1 6.6131 0.8394 0.0220 13 7 1.6501 2.0997 -1.2546 14 6 1.8480 3.5529 -1.1714 15 6 2.3821 1.5332 -2.3953 16 6 1.6997 1.9322 -3.6783 17 7 0.7610 1.1517 -4.1751 18 6 0.1367 1.4719 -5.2972 19 6 0.4894 2.6395 -5.9552 20 6 1.4846 3.4316 -5.4048 21 7 2.0612 3.0494 -4.2766 22 1 -0.3633 0.5863 -0.8439 23 1 -0.3633 -1.0241 -0.0857 24 1 -0.3632 0.4378 0.9298 25 1 1.8933 -0.5139 -0.8899 26 1 1.8934 -0.5138 0.8900 27 1 3.8324 -0.0627 2.9471 28 1 1.4865 4.0219 -2.0864 29 1 1.2953 3.9465 -0.3183 30 1 2.9093 3.7685 -1.0474 31 1 3.4045 1.9111 -2.3949 32 1 2.3966 0.4463 -2.3142 33 1 -0.6342 0.8298 -5.6969 34 1 0.0003 2.9254 -6.8748 35 1 1.7853 4.3486 -5.8897 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000718920696.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:38:28 Heat of formation + Delta-G solvation = 54.213535 kcal Electronic energy + Delta-G solvation = -16872.697576 eV Core-core repulsion = 14292.168812 eV Total energy + Delta-G solvation = -2580.528764 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.73719 -37.18351 -33.45782 -33.17326 -31.81968 -30.99854 -27.23250 -26.76438 -24.37238 -24.02999 -22.64209 -21.39350 -19.00238 -17.26044 -16.98141 -16.10567 -15.36529 -14.93948 -14.62656 -14.09550 -13.55134 -13.41818 -13.32726 -12.67063 -12.24192 -11.98789 -11.46483 -11.26910 -11.01732 -10.88414 -10.82345 -10.59423 -10.52922 -10.37962 -10.03452 -9.57267 -9.46396 -9.28778 -9.03899 -8.94398 -8.33536 -7.16845 -5.97361 -4.10838 1.11704 1.32190 3.28888 3.36176 3.39385 3.98278 4.28937 4.41750 4.42718 4.72418 5.10557 5.25027 5.26520 5.34074 5.69792 5.82193 6.21732 6.26389 6.41019 6.51092 6.57201 6.60611 6.72937 6.77953 6.80356 7.18453 7.25555 7.26059 7.40113 7.62875 7.79099 7.96181 8.15386 8.29935 8.44836 8.47473 8.98486 9.56885 11.02201 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.030846 B = 0.007348 C = 0.006550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 907.522382 B = 3809.394780 C = 4273.794569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.110 4.110 3 C 0.216 3.784 4 H 0.042 0.958 5 C -0.546 4.546 6 H 0.058 0.942 7 C 0.070 3.930 8 N -0.884 5.884 9 Si 0.887 3.113 10 H -0.281 1.281 11 H -0.286 1.286 12 H -0.275 1.275 13 N -0.530 5.530 14 C 0.037 3.963 15 C 0.126 3.874 16 C 0.345 3.655 17 N -0.503 5.503 18 C 0.144 3.856 19 C -0.248 4.248 20 C 0.142 3.858 21 N -0.516 5.516 22 H 0.050 0.950 23 H 0.025 0.975 24 H 0.035 0.965 25 H 0.034 0.966 26 H 0.092 0.908 27 H 0.261 0.739 28 H 0.045 0.955 29 H 0.053 0.947 30 H 0.030 0.970 31 H 0.063 0.937 32 H 0.099 0.901 33 H 0.162 0.838 34 H 0.140 0.860 35 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.112 3.350 -12.722 14.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.148 4.148 3 C 0.110 3.890 4 H 0.059 0.941 5 C -0.585 4.585 6 H 0.076 0.924 7 C -0.133 4.133 8 N -0.522 5.522 9 Si 0.715 3.285 10 H -0.207 1.207 11 H -0.212 1.212 12 H -0.200 1.200 13 N -0.254 5.254 14 C -0.112 4.112 15 C -0.004 4.004 16 C 0.077 3.923 17 N -0.217 5.217 18 C -0.023 4.023 19 C -0.270 4.270 20 C -0.024 4.024 21 N -0.230 5.230 22 H 0.069 0.931 23 H 0.044 0.956 24 H 0.055 0.945 25 H 0.052 0.948 26 H 0.111 0.889 27 H 0.071 0.929 28 H 0.064 0.936 29 H 0.072 0.928 30 H 0.049 0.951 31 H 0.081 0.919 32 H 0.117 0.883 33 H 0.179 0.821 34 H 0.158 0.842 35 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -5.138 2.888 -11.738 13.135 hybrid contribution 1.388 0.495 -0.664 1.617 sum -3.750 3.383 -12.402 13.391 Atomic orbital electron populations 1.21699 0.98815 0.98612 1.00406 1.21589 0.92384 0.98937 1.01883 1.19336 0.93239 0.91432 0.85029 0.94061 1.21764 0.92687 1.38311 1.05787 0.92401 1.24899 0.97845 0.94929 0.95622 1.69874 1.34830 1.38127 1.09409 0.86673 0.86158 0.77522 0.78132 1.20745 1.21182 1.19975 1.62378 1.55320 1.03267 1.04452 1.22175 0.99751 0.89522 0.99781 1.20729 0.94272 1.01335 0.84030 1.23776 0.88227 0.84940 0.95308 1.68383 1.07997 1.33767 1.11513 1.23244 0.95563 0.93649 0.89837 1.22794 1.02030 0.98631 1.03589 1.23189 0.90529 0.98055 0.90647 1.68396 1.28569 1.16813 1.09259 0.93055 0.95582 0.94547 0.94773 0.88941 0.92865 0.93641 0.92788 0.95115 0.91942 0.88290 0.82072 0.84215 0.82163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.92 9.86 37.16 0.37 -2.56 16 2 C -0.11 -2.63 5.22 -26.73 -0.14 -2.77 16 3 C 0.22 5.34 1.69 -68.86 -0.12 5.23 16 4 H 0.04 1.13 7.96 -51.93 -0.41 0.72 16 5 C -0.55 -14.54 7.28 -34.44 -0.25 -14.79 16 6 H 0.06 1.55 5.99 -52.49 -0.31 1.23 16 7 C 0.07 1.89 5.29 -17.82 -0.09 1.79 16 8 N -0.88 -24.73 11.29 55.43 0.63 -24.11 16 9 Si 0.89 21.08 29.54 -169.99 -5.02 16.06 16 10 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 11 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 12 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 13 N -0.53 -11.64 4.01 -237.73 -0.95 -12.59 16 14 C 0.04 0.75 9.13 60.07 0.55 1.30 16 15 C 0.13 2.63 4.45 -4.98 -0.02 2.61 16 16 C 0.34 6.41 6.61 -157.20 -1.04 5.37 16 17 N -0.50 -8.73 10.33 -10.73 -0.11 -8.84 16 18 C 0.14 1.86 11.31 -17.20 -0.19 1.67 16 19 C -0.25 -2.73 10.17 -39.32 -0.40 -3.12 16 20 C 0.14 1.81 11.31 -17.20 -0.19 1.62 16 21 N -0.52 -8.76 9.37 -10.72 -0.10 -8.86 16 22 H 0.05 1.08 7.62 -51.93 -0.40 0.69 16 23 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 24 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 25 H 0.03 0.81 6.24 -51.93 -0.32 0.48 16 26 H 0.09 2.46 5.95 -51.93 -0.31 2.15 16 27 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 28 H 0.04 0.87 6.77 -51.93 -0.35 0.52 16 29 H 0.05 1.08 8.03 -51.93 -0.42 0.66 16 30 H 0.03 0.66 7.41 -51.93 -0.39 0.27 16 31 H 0.06 1.37 6.61 -51.93 -0.34 1.03 16 32 H 0.10 2.16 6.04 -51.93 -0.31 1.85 16 33 H 0.16 1.50 8.06 -52.49 -0.42 1.08 16 34 H 0.14 1.00 8.06 -52.48 -0.42 0.58 16 35 H 0.16 1.46 8.06 -52.49 -0.42 1.03 16 LS Contribution 285.59 15.07 4.30 4.30 Total: -1.00 -29.43 285.59 -7.61 -37.04 By element: Atomic # 1 Polarization: 5.45 SS G_CDS: -4.82 Total: 0.63 kcal Atomic # 6 Polarization: -2.11 SS G_CDS: -1.54 Total: -3.64 kcal Atomic # 7 Polarization: -53.86 SS G_CDS: -0.54 Total: -54.40 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -29.43 -7.61 -37.04 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000718920696.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.257 kcal (2) G-P(sol) polarization free energy of solvation -29.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.043 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds